IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
183	 62.05	0	196023..196325	-	100	39995293	-	GSU0182	-	putative lipoprotein
184	 63.38	0	196424..197731	-	435	39995294	-	GSU0183	-	putative lipoprotein
185	 67.28	+1	198316..198963	+	215	39995295	-	GSU0184	-	HAD family hydrolase
186	 65.68	0	198989..200209	-	406	39995296	-	GSU0185	-	hypothetical protein
187	 64.66	0	200953..201300	-	115	39995297	-	GSU0187	-	hypothetical protein
188	 60.29	0	201297..201641	-	114	39995298	-	GSU0188	-	hypothetical protein
189	 63.92	0	201957..203339	+	460	39995299	dbpA	GSU0189	-	ATP-dependent RNA helicase DbpA
190	 51.28	-1	203317..203628	-	103	39995300	-	GSU0190	-	hypothetical protein
191	 47.26	-2	203766..203966	-	66	39995301	-	GSU0191	-	cold-shock domain-contain protein
192	 52.67	-1	204369..204611	+	80	39995302	-	GSU0192	-	hypothetical protein
193	 66.40	+1	204852..205991	-	379	39995303	-	GSU0193	-	L-sorbosone dehydrogenase, putative
194	 69.25	+1	206161..207243	+	360	39995304	-	GSU0194	-	hypothetical protein
195	 57.99	0	207298..207516	+	72	39995305	-	GSU0195	-	hypothetical protein
196	 66.05	0	207610..208098	-	162	39995306	-	GSU0196	-	thioesterase family protein
197	 67.71	+1	208179..208943	-	254	39995307	-	GSU0197	-	short chain dehydrogenase/reductase family oxidoreductase
198	 64.13	0	209066..209656	+	196	39995308	-	GSU0198	-	hypothetical protein
199	 53.11	-1	209939..210115	-	58	39995309	-	GSU0199	-	hypothetical protein
200	 64.12	0	210179..210649	+	156	39995310	iorA	GSU0200	-	isoquinoline 1-oxidoreductase, alpha subunit
201	 66.99	+1	210646..212817	+	723	39995311	iorB	GSU0201	-	isoquinoline 1-oxidoreductase, beta subunit
202	 68.56	+1	212880..213620	+	246	39995312	-	GSU0202	-	hypothetical protein
203	 69.44	+1	213617..214228	+	203	39995313	-	GSU0203	-	hypothetical protein
204	 64.39	0	214293..215651	+	452	39995314	-	GSU0204	-	radical SAM domain-containing protein
205	 60.93	0	215676..216302	+	208	39995315	-	GSU0205	-	TetR family transcriptional regulator
206	 64.89	0	216299..217201	+	300	39995316	-	GSU0206	-	zinc transporter ZupT
207	 53.23	-1	217397..217597	+	66	39995317	-	GSU0207	-	cold-shock domain-contain protein
208	 63.42	0	217769..218569	+	266	39995318	-	GSU0208	-	hypothetical protein
209	 52.82	-1	218729..218923	+	64	39995319	-	GSU0209	-	hypothetical protein
210	 61.16	0	219077..220039	+	320	39995320	-	GSU0210	-	hypothetical protein
211	 58.88	0	220056..220967	+	303	39995321	-	GSU0211	-	ABC transporter, permease protein, putative
212	 57.89	0	220960..221757	+	265	39995322	-	GSU0212	-	ABC transporter, ATP-binding protein
213	 68.37	+1	222018..223307	+	429	39995323	-	GSU0213	-	radical SAM domain-containing protein
214	 60.81	0	223673..224560	+	295	39995324	-	GSU0214	-	hypothetical protein
215	 58.65	0	224725..225597	+	290	39995325	folD-1	GSU0215	-	folD bifunctional protein
216	 56.48	0	225681..225896	-	71	39995326	-	GSU0216	-	hypothetical protein
217	 64.90	0	226424..226990	+	188	39995327	-	GSU0217	-	nitroreductase family protein
218	 63.44	0	227086..227922	+	278	39995328	-	GSU0218	-	hypothetical protein
219	 62.79	0	227919..229544	+	541	39995329	-	GSU0219	-	cytochrome c oxidase, subunit I
220	 63.52	0	229541..230143	+	200	39995330	-	GSU0220	-	cytochrome c oxidase, subunit III
221	 62.89	0	230160..230450	+	96	39995331	-	GSU0221	-	cytochrome c oxidase, subunit IV
222	 62.63	0	230508..231374	+	288	39995332	-	GSU0222	-	cytochrome c oxidase, subunit II
223	 70.60	+1	231371..232183	+	270	39995333	-	GSU0223	-	protoheme IX farnesyl transferase, putative
224	 63.36	0	232204..232536	-	110	39995334	-	GSU0224	-	hypothetical protein
225	 62.50	0	232553..232768	+	71	39995335	-	GSU0225	-	hypothetical protein
226	 63.78	0	232930..234558	+	542	39995336	-	GSU0226	-	L-lactate permease, putative
227	 69.50	+1	234575..235492	+	305	39995337	-	GSU0227	-	type II DNA modification methyltransferase, putative
228	 61.11	0	235556..236059	-	167	39995338	-	GSU0228	-	peptidyl-prolyl cis-trans isomerase, FKBP-type, putative
229	 63.64	0	236228..237880	+	550	39995339	alkK	GSU0229	-	acyl-CoA synthetase
230	 62.37	0	237886..238956	-	356	39995340	pilT-2	GSU0230	-	twitching motility protein PilT
231	 63.57	0	239002..240777	-	591	39995341	-	GSU0231	-	hypothetical protein
232	 48.15	-2	240866..240973	-	35	39995342	-	GSU0232	-	hypothetical protein
233	 66.82	+1	241033..241692	+	219	39995343	-	GSU0233	-	hypothetical protein
234	 65.31	0	241707..242519	+	270	39995344	-	GSU0234	-	FNT family protein
235	 68.59	+1	242523..244808	-	761	39995345	-	GSU0235	-	S1 RNA-binding domain-containing protein
236	 68.59	+1	244889..245305	-	138	39995346	-	GSU0236	-	hypothetical protein
237	 68.13	+1	245317..245793	-	158	39995347	-	GSU0237	-	MaoC-like domain-containing protein
238	 69.05	+1	245855..247240	-	461	39995348	-	GSU0238	-	radical SAM domain-containing protein
239	 68.56	+1	247237..247659	-	140	39995349	-	GSU0239	-	hypothetical protein
240	 69.16	+1	247661..248503	-	280	39995350	-	GSU0240	-	malonyl CoA-acyl carrier protein transacylase, putative
241	 67.05	+1	248506..249798	-	430	39995351	-	GSU0241	-	BchE/P-methylase family protein
242	 62.40	0	249795..250052	-	85	39995352	acpP-1	GSU0242	-	acyl carrier protein
243	 67.22	+1	250057..250956	-	299	39995353	-	GSU0243	-	hypothetical protein
244	 62.96	0	251048..252424	-	458	39995354	-	GSU0244	-	radical SAM domain-containing protein
245	 68.02	+1	252474..253136	-	220	39995355	-	GSU0245	-	glycosyl transferase, group 2 family protein
246	 69.43	+1	253121..253951	-	276	39995356	-	GSU0246	-	polysaccharide deacetylase domain-containing protein
247	 68.44	+1	254133..255596	+	487	39995357	-	GSU0247	-	radical SAM domain-containing protein
248	 67.91	+1	255596..256882	+	428	39995358	-	GSU0248	-	BchE/P-methylase family protein
249	 62.88	0	256943..257920	+	325	39995359	-	GSU0249	-	hypothetical protein
250	 61.00	0	257966..258406	+	146	39995360	-	GSU0250	-	hypothetical protein
251	 62.75	0	258486..258791	-	101	39995361	-	GSU0251	-	hypothetical protein
252	 51.03	-1	259068..260186	+	372	39995362	-	GSU0252	-	ISGsu1, transposase
253	 62.33	0	260497..262989	+	830	39995363	-	GSU0253	-	sensory box histidine kinase
254	 59.10	0	262990..263637	+	215	39995364	-	GSU0254	-	LuxR family DNA-binding response regulator
255	 59.86	0	263840..265690	+	616	39995365	-	GSU0255	-	sensory box histidine kinase
256	 53.65	-1	265796..266233	+	145	39995366	-	GSU0256	-	hypothetical protein
257	 62.54	0	266321..266611	-	96	39995367	-	GSU0257	-	hypothetical protein
258	 58.45	0	266599..266805	-	68	39995368	-	GSU0258	-	hypothetical protein
259	 61.23	0	266802..267371	-	189	39995369	-	GSU0259	-	flavoredoxin
260	 63.68	0	267578..268045	-	155	39995370	-	GSU0260	-	universal stress protein
261	 64.18	0	268106..269872	-	588	39995371	-	GSU0261	-	sodium/hydrogen exchanger family protein
262	 57.58	0	270284..270679	-	131	39995372	-	GSU0263	-	hypothetical protein
263	 58.56	0	270365..270475	+	36	39995373	-	GSU0262	-	hypothetical protein
264	 67.56	+1	270803..272038	-	411	39995374	-	GSU0264	-	Bcr/CflA subfamily drug resistance transporter
265	 64.34	0	272096..272998	-	300	39995375	-	GSU0265	-	hypothetical protein
266	 58.66	0	273393..274316	+	307	39995376	-	GSU0266	-	LysR family transcriptional regulator
267	 64.66	0	274646..275392	+	248	39995377	-	GSU0267	-	GntR family transcriptional regulator
268	 62.83	0	275389..276222	+	277	39995378	-	GSU0268	-	hypothetical protein
269	 63.81	0	276219..276533	+	104	39995379	-	GSU0269	-	hypothetical protein
270	 64.81	0	276632..278461	-	609	39995380	glmS	GSU0270	-	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
271	 65.27	0	278527..279957	-	476	39995381	glmU	GSU0271	-	UDP-N-acetylglucosamine pyrophosphorylase
272	 59.34	0	280118..280663	+	181	39995382	-	GSU0272	-	hypothetical protein
273	 63.22	0	280807..282576	+	589	39995383	-	GSU0273	-	radical SAM domain-containing protein
274	 59.25	0	282877..284736	+	619	39995384	-	GSU0274	-	cytochrome c family protein
275	 57.29	0	285027..285218	-	63	39995385	-	GSU0275	-	hypothetical protein
276	 60.27	0	285252..286424	-	390	39995386	-	GSU0276	-	HlyD family secretion protein
277	 62.93	0	286417..288585	-	722	39995387	-	GSU0277	-	ABC transporter, ATP-binding/permease protein
278	 61.53	0	288582..289847	-	421	39995388	-	GSU0278	-	outer membrane efflux protein
279	 62.89	0	289984..307683	-	5899	39995389	-	GSU0279	-	cadherin domain/calx-beta domain-containing protein
280	 58.31	0	307916..309268	-	450	39995390	-	GSU0280	-	Fis family transcriptional regulator
281	 59.00	0	311187..311447	+	86	39995391	-	GSU0282	-	hypothetical protein
282	 61.18	0	311626..313428	-	600	39995392	-	GSU0283	-	sensor histidine kinase
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.