IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2062	 58.07	0	2278904..2279869	-	321	39997172	-	GSU2074	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
2063	 62.55	0	2279884..2281341	-	485	39997173	-	GSU2075	-	subtilisin
2064	 60.83	0	2281463..2282884	-	473	39997174	-	GSU2076	-	cytochrome c family protein
2065	 42.39	-2	2283949..2284191	+	80	39997175	-	GSU2077	-	hypothetical protein
2066	 56.68	0	2284208..2285308	-	366	39997176	rodA	GSU2078	-	rod shape-determining protein RodA
2067	 60.99	0	2285312..2287231	-	639	39997177	mrdA	GSU2079	-	penicillin-binding protein 2
2068	 57.00	0	2287228..2287713	-	161	39997178	-	GSU2080	-	rod shape-determining protein MreD, putative
2069	 60.00	0	2287706..2288530	-	274	39997179	mreC	GSU2081	-	rod shape-determining protein MreC
2070	 62.37	0	2288634..2289122	-	162	39997180	-	GSU2082	-	hypothetical protein
2071	 61.13	0	2289112..2290014	-	300	39997181	rfbA	GSU2083	-	glucose-1-phosphate thymidylyltransferase
2072	 63.54	0	2290096..2290671	-	191	39997182	-	GSU2084	-	HAD superfamily hydrolase
2073	 65.51	0	2290675..2292147	-	490	39997183	-	GSU2085	-	ADP-heptose synthase
2074	 64.56	0	2292155..2293105	-	316	39997184	-	GSU2086	-	hypothetical protein
2075	 64.21	0	2293102..2293671	-	189	39997185	gmhA	GSU2087	-	phosphoheptose isomerase
2076	 65.71	0	2293668..2294822	-	384	39997186	-	GSU2088	-	glycosyl transferase, group 2 family protein
2077	 62.64	0	2294930..2295973	-	347	39997187	mreB	GSU2089	-	rod shape-determining protein MreB
2078	 60.92	0	2296177..2297760	+	527	39997188	-	GSU2090	-	hypothetical protein
2079	 61.50	0	2297786..2298676	+	296	39997189	purC	GSU2091	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2080	 67.57	+1	2298770..2299324	-	184	39997190	-	GSU2092	-	hypothetical protein
2081	 64.04	0	2299353..2300990	-	545	39997191	-	GSU2093	-	ABC transporter, ATP-binding protein
2082	 55.76	0	2301233..2302222	-	329	39997192	-	GSU2094	-	response regulator
2083	 67.53	+1	2302816..2304084	-	422	39997193	-	GSU2095	-	NADH oxidase, putative
2084	 68.69	+1	2304084..2304677	-	197	39997194	-	GSU2096	-	iron-sulfur cluster-binding protein
2085	 68.89	+1	2304694..2305548	-	284	39997195	-	GSU2097	-	carbon monoxide dehydrogenase accessory protein, putative
2086	 67.50	+1	2305590..2307512	-	640	39997196	cooS	GSU2098	-	carbon monoxide dehydrogenase subunit
2087	 61.37	0	2307645..2308343	-	232	39997197	-	GSU2099	-	sensory box protein, putative
2088	 67.40	+1	2308644..2310827	+	727	39997198	katG	GSU2100	-	catalase/peroxidase
2089	 65.95	0	2311845..2314205	-	786	39997199	-	GSU2101	-	formate acetyltransferase
2090	 68.23	+1	2314210..2315106	-	298	39997200	-	GSU2102	-	pyruvate formate-lyase-activating enzyme, putative
2091	 63.33	0	2315286..2315405	+	39	39997201	-	GSU2103	-	hypothetical protein
2092	 51.73	-1	2315402..2315950	-	182	39997202	-	GSU2104	-	putative lipoprotein
2093	 56.38	0	2316573..2318603	-	676	39997203	-	GSU2105	-	hypothetical protein
2094	 56.70	0	2318612..2321209	-	865	39997204	-	GSU2106	-	hypothetical protein
2095	 52.53	-1	2321225..2325037	-	1270	39997205	-	GSU2107	-	hypothetical protein
2096	 56.84	0	2325896..2329540	-	1214	39997206	-	GSU2108	-	hypothetical protein
2097	 51.17	-1	2329537..2330136	-	199	39997207	-	GSU2109	-	hypothetical protein
2098	 50.51	-1	2330111..2330995	-	294	39997208	-	GSU2110	-	hypothetical protein
2099	 51.64	-1	2331147..2331359	+	70	39997209	-	GSU2111	-	hypothetical protein
2100	 53.28	-1	2331539..2331904	-	121	39997210	-	GSU2112	-	hypothetical protein
2101	 56.02	0	2332015..2332446	+	143	39997211	-	GSU2113	-	transcriptional regulator, putative
2102	 51.04	-1	2332492..2332875	-	127	39997212	-	GSU2114	-	hypothetical protein
2103	 56.90	0	2333091..2333612	-	173	39997213	-	GSU2115	-	hypothetical protein
2104	 58.10	0	2334447..2335415	+	322	39997214	-	GSU2116	-	hypothetical protein
2105	 59.30	0	2335443..2335727	+	94	39997215	-	GSU2117	-	hypothetical protein
2106	 57.42	0	2335994..2337334	+	446	39997216	-	GSU2118	-	integrative genetic element Gsu21, integrase
2107	 47.50	-2	2337618..2338979	+	453	39997217	-	GSU2119	-	integrative genetic element Gsu56, integrase
2108	 41.30	-2	2339126..2339401	+	91	39997218	ihfA-2	GSU2120	-	integration host factor, alpha subunit
2109	 51.87	-1	2339490..2339996	+	168	39997219	-	GSU2121	-	transglycosylase SLT domain-containing protein
2110	 52.69	-1	2340674..2342068	+	464	39997220	-	GSU2122	-	TraG family protein
2111	 52.05	-1	2342182..2343495	+	437	39997221	-	GSU2123	-	HD domain-containing protein
2112	 57.74	0	2343480..2344319	+	279	39997222	-	GSU2124	-	thioredoxin domain-containing protein
2113	 58.72	0	2344357..2345841	+	494	39997223	-	GSU2125	-	hypothetical protein
2114	 49.16	-2	2345865..2346161	+	98	39997224	-	GSU2126	-	hypothetical protein
2115	 56.20	0	2346192..2346554	+	120	39997225	-	GSU2127	-	ISGsu7, transposase OrfA
2116	 56.79	0	2346551..2347441	+	296	39997226	-	GSU2128	-	ISGsu7, transposase OrfB
2117	 42.07	-2	2347707..2348015	-	102	39997227	-	GSU2129	-	hypothetical protein
2118	 50.79	-1	2348104..2348355	+	83	39997228	-	GSU2130	-	hypothetical protein
2119	 46.38	-2	2348501..2348776	-	91	39997229	-	GSU2131	-	hypothetical protein
2120	 50.00	-1	2348773..2349168	-	131	39997230	-	GSU2132	-	hypothetical protein
2121	 49.91	-2	2349187..2349771	-	194	39997231	-	GSU2133	-	putative lipoprotein
2122	 47.95	-2	2349833..2350174	-	113	39997232	-	GSU2134	-	nitrogen regulatory protein P-II, putative
2123	 58.07	0	2350205..2353309	-	1034	39997233	-	GSU2135	-	CzcA family heavy metal efflux protein
2124	 60.38	0	2353324..2354580	-	418	39997234	-	GSU2136	-	CzcB family heavy metal efflux protein
2125	 57.15	0	2354577..2355890	-	437	39997235	-	GSU2137	-	metal ion efflux outer membrane protein family protein, putative
2126	 48.84	-2	2356471..2356599	-	42	39997236	-	GSU2138	-	hypothetical protein
2127	 56.20	0	2356638..2357000	+	120	39997237	-	GSU2139	-	ISGsu7, transposase OrfA
2128	 56.79	0	2356997..2357887	+	296	39997238	-	GSU2140	-	ISGsu7, transposase OrfB
2129	 51.33	-1	2357866..2358954	-	362	39997239	-	GSU2141	-	ISGsu1, transposase, interruption
2130	 51.65	-1	2359985..2360257	+	90	39997240	-	GSU2142	-	hypothetical protein
2131	 54.71	-1	2360703..2361095	-	130	39997241	-	GSU2143	-	hypothetical protein
2132	 57.91	0	2361163..2362452	-	429	39997242	-	GSU2144	-	sensor histidine kinase
2133	 55.65	0	2362526..2363224	-	232	39997243	-	GSU2145	-	DNA-binding response regulator
2134	 49.61	-2	2363292..2363678	-	128	39997244	-	GSU2146	-	hypothetical protein
2135	 55.42	0	2363719..2365860	-	713	39997245	-	GSU2147	-	cadmium-translocating P-type ATPase
2136	 50.95	-1	2365979..2366398	-	139	39997246	-	GSU2148	-	hypothetical protein
2137	 50.40	-1	2366388..2366762	-	124	39997247	-	GSU2149	-	ArsR family transcriptional regulator
2138	 38.71	-2	2367268..2367360	+	30	39997248	-	GSU2150	-	hypothetical protein
2139	 53.33	-1	2368214..2368633	+	139	39997249	ssb-1	GSU2151	-	single-strand binding protein
2140	 54.13	-1	2368743..2369699	+	318	39997250	-	GSU2152	-	hypothetical protein
2141	 51.90	-1	2369779..2369988	+	69	39997251	-	GSU2153	-	hypothetical protein
2142	 54.15	-1	2370002..2370976	+	324	39997252	-	GSU2154	-	hypothetical protein
2143	 52.45	-1	2371061..2371264	+	67	39997253	-	GSU2155	-	hypothetical protein
2144	 55.56	0	2371261..2371530	+	89	39997254	-	GSU2156	-	hypothetical protein
2145	 55.80	0	2371571..2371975	+	134	39997255	-	GSU2157	-	hypothetical protein
2146	 58.70	0	2372074..2373015	+	313	39997256	-	GSU2158	-	cobS protein, putative
2147	 57.49	0	2373012..2373425	+	137	39997257	-	GSU2159	-	hypothetical protein
2148	 56.74	0	2373455..2374411	+	318	39997258	-	GSU2160	-	hypothetical protein
2149	 57.18	0	2374421..2376148	+	575	39997259	-	GSU2161	-	hypothetical protein
2150	 53.37	-1	2376230..2376793	+	187	39997260	-	GSU2162	-	hypothetical protein
2151	 53.70	-1	2376777..2377046	+	89	39997261	-	GSU2163	-	hypothetical protein
2152	 56.96	0	2377156..2380512	+	1118	39997262	-	GSU2164	-	hypothetical protein
2153	 55.30	-1	2380589..2380984	+	131	39997263	-	GSU2165	-	hypothetical protein
2154	 59.96	0	2381011..2381532	+	173	39997264	-	GSU2166	-	hypothetical protein
2155	 61.05	0	2381546..2382061	+	171	39997265	-	GSU2167	-	CHC2 zinc finger domain-containing protein
2156	 55.69	0	2382140..2382631	+	163	39997266	-	GSU2168	-	DNA repair protein RadC
2157	 53.57	-1	2382774..2383025	-	83	39997267	-	GSU2169	-	hypothetical protein
2158	 56.20	0	2383064..2383426	+	120	39997268	-	GSU2170	-	ISGsu7, transposase OrfA
2159	 56.79	0	2383423..2384313	+	296	39997269	-	GSU2171	-	ISGsu7, transposase OrfB
2160	 54.50	-1	2384455..2385054	-	199	39997270	-	GSU2172	-	OmpA domain-containing protein
2161	 53.49	-1	2385179..2385307	+	42	39997271	-	GSU2173	-	putative lipoprotein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.