IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1968	 61.11	0	2170504..2171385	-	293	39997078	-	GSU1980	-	polysaccharide deacetylase domain-containing protein
1969	 58.05	0	2171409..2172638	-	409	39997079	-	GSU1981	-	hypothetical protein
1970	 58.80	0	2172685..2173866	-	393	39997080	-	GSU1982	-	general secretion pathway protein-related protein
1971	 59.93	0	2173902..2174747	-	281	39997081	-	GSU1983	-	polysaccharide biosynthesis protein, putative
1972	 56.48	0	2174883..2176355	-	490	39997082	-	GSU1984	-	polysaccharide chain length determinant protein, putative
1973	 58.07	0	2176355..2177203	-	282	39997083	-	GSU1985	-	outer membrane protein, putative
1974	 59.88	0	2177234..2178442	-	402	39997084	-	GSU1986	-	glycosyl transferase domain-containing protein
1975	 58.27	0	2178594..2181188	-	864	39997085	-	GSU1987	-	TPR domain-containing protein
1976	 51.01	-1	2181277..2181723	-	148	39997086	-	GSU1988	-	hypothetical protein
1977	 57.45	0	2182011..2183345	-	444	39997087	-	GSU1989	-	sigma-54 dependent DNA-binding response regulator
1978	 55.85	0	2183375..2184382	-	335	39997088	-	GSU1990	-	sensor histidine kinase
1979	 59.67	0	2184557..2185285	+	242	39997089	-	GSU1991	-	CAAX amino terminal protease family protein
1980	 54.04	-1	2185291..2185971	-	226	39997090	-	GSU1992	-	Crp/FNR family transcriptional regulator
1981	 41.67	-2	2186192..2186335	-	47	39997091	-	GSU1993	-	hypothetical protein
1982	 54.90	-1	2186413..2187024	+	203	39997092	-	GSU1994	-	hypothetical protein
1983	 55.69	0	2187104..2187832	-	242	39997093	-	GSU1995	-	hypothetical protein
1984	 57.75	0	2187920..2188951	+	343	39997094	-	GSU1996	-	cytochrome c family protein
1985	 61.44	0	2189041..2190342	-	433	39997095	-	GSU1997	-	PDZ domain-containing protein
1986	 62.17	0	2190339..2191451	-	370	39997096	-	GSU1998	-	transporter, putative
1987	 53.78	-1	2191488..2191712	-	74	39997097	hfq	GSU1999	-	hfq protein
1988	 60.26	0	2191725..2192660	-	311	39997098	miaA	GSU2000	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1989	 65.51	0	2192669..2194489	-	606	39997099	mutL	GSU2001	-	DNA mismatch repair protein MutL
1990	 61.05	0	2194489..2195592	-	367	39997100	-	GSU2002	-	hypothetical protein
1991	 58.17	0	2195781..2196227	-	148	39997101	-	GSU2003	-	hypothetical protein
1992	 63.68	0	2196283..2198121	-	612	39997102	-	GSU2004	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
1993	 60.10	0	2198517..2199674	+	385	39997103	-	GSU2005	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
1994	 58.13	0	2199786..2200652	+	288	39997104	-	GSU2006	-	branched-chain amino acid ABC transporter, permease protein
1995	 58.85	0	2200668..2201741	+	357	39997105	-	GSU2007	-	branched-chain amino acid ABC transporter, permease protein
1996	 60.42	0	2201752..2202471	+	239	39997106	-	GSU2008	-	branched-chain amino acid ABC transporter, ATP-binding protein
1997	 58.87	0	2202499..2203203	+	234	39997107	-	GSU2009	-	branched-chain amino acid ABC transporter, ATP-binding protein
1998	 54.71	-1	2203228..2203662	+	144	39997108	-	GSU2010	-	CBS domain-containing protein
1999	 60.46	0	2203783..2204958	-	391	39997109	-	GSU2011	-	cysteine desulfurase
2000	 57.69	0	2204955..2205812	-	285	39997110	-	GSU2012	-	NifU family protein
2001	 59.62	0	2205968..2207386	-	472	39997111	-	GSU2013	-	phosphoglucomutase/phosphomannomutase family protein
2002	 58.42	0	2207669..2207959	+	96	39997112	-	GSU2014	-	hypothetical protein
2003	 60.49	0	2208031..2208483	+	150	39997113	-	GSU2015	-	mutT/nudix family protein
2004	 56.75	0	2208461..2210860	-	799	39997114	-	GSU2016	-	sensory box/GGDEF family protein
2005	 59.98	0	2210896..2211717	-	273	39997115	-	GSU2017	-	hypothetical protein
2006	 56.64	0	2211797..2212195	-	132	39997116	gcvH-2	GSU2018	-	glycine cleavage system H protein
2007	 57.49	0	2212199..2213539	-	446	39997117	accC	GSU2019	-	acetyl-CoA carboxylase, biotin carboxylase
2008	 59.75	0	2213570..2214046	-	158	39997118	accB	GSU2020	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2009	 60.21	0	2214096..2215163	-	355	39997119	pepQ-2	GSU2021	-	xaa-pro dipeptidase
2010	 58.94	0	2215167..2215619	-	150	39997120	aroQ	GSU2022	-	3-dehydroquinate dehydratase
2011	 60.33	0	2215648..2216010	-	120	39997121	-	GSU2023	-	hypothetical protein
2012	 58.29	0	2215989..2217110	-	373	39997122	-	GSU2024	-	hypothetical protein
2013	 60.79	0	2217113..2218201	-	362	39997123	aroB	GSU2025	-	3-dehydroquinate synthase
2014	 60.80	0	2218198..2218725	-	175	39997124	aroK	GSU2026	-	shikimate kinase
2015	 61.25	0	2218709..2219890	-	393	39997125	aroC	GSU2027	-	chorismate synthase
2016	 59.14	0	2219965..2222649	-	894	39997126	-	GSU2028	-	type IV pilus biogenesis protein PilQ
2017	 57.56	0	2222660..2223208	-	182	39997127	-	GSU2029	-	putative lipoprotein
2018	 53.60	-1	2223192..2223788	-	198	39997128	-	GSU2030	-	type IV pilus biogenesis protein PilO
2019	 53.47	-1	2223826..2224401	-	191	39997129	-	GSU2031	-	type IV pilus biogenesis protein PilN
2020	 55.68	0	2224395..2225450	-	351	39997130	-	GSU2032	-	type IV pilus biogenesis protein PilM
2021	 44.80	-2	2225471..2225845	-	124	39997131	-	GSU2033	-	transcriptional regulator, putative
2022	 55.89	0	2226192..2226785	-	197	39997132	-	GSU2034	-	hypothetical protein
2023	 57.96	0	2226863..2227861	-	332	39997133	-	GSU2035	-	hypothetical protein
2024	 56.15	0	2228053..2228442	-	129	39997134	-	GSU2036	-	hypothetical protein
2025	 55.14	-1	2228420..2228905	-	161	39997135	-	GSU2037	-	hypothetical protein
2026	 58.77	0	2228907..2234594	-	1895	39997136	-	GSU2038	-	hypothetical protein
2027	 52.81	-1	2234591..2234893	-	100	39997137	-	GSU2039	-	hypothetical protein
2028	 56.06	0	2235058..2235189	+	43	39997138	-	GSU2040	-	hypothetical protein
2029	 60.75	0	2235760..2237127	-	455	39997139	-	GSU2041	-	sigma-54 dependent DNA-binding response regulator
2030	 63.37	0	2237164..2238738	-	524	39997140	-	GSU2042	-	sensor histidine kinase
2031	 59.23	0	2238751..2239530	-	259	39997141	pilD	GSU2043	-	type 4 prepilin-like proteins leader peptide processing enzyme
2032	 60.81	0	2239587..2241875	-	762	39997142	-	GSU2044	-	sensory box/GGDEF family protein
2033	 61.90	0	2242180..2244843	-	887	39997143	valS	GSU2045	-	valyl-tRNA synthetase
2034	 61.98	0	2244947..2246161	-	404	39997144	-	GSU2046	-	response regulator
2035	 62.37	0	2246279..2247466	-	395	39997145	-	GSU2047	-	hypothetical protein
2036	 59.45	0	2247599..2248000	-	133	39997146	-	GSU2048	-	hypothetical protein
2037	 63.03	0	2248053..2249234	-	393	39997147	argJ	GSU2049	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2038	 60.50	0	2249292..2251985	-	897	39997148	secA	GSU2050	-	preprotein translocase subunit SecA
2039	 63.44	0	2252242..2253543	-	433	39997149	-	GSU2051	-	phenylacetate-coenzyme A ligase, putative
2040	 67.40	+1	2253583..2254131	-	182	39997150	-	GSU2052	-	indolepyruvate oxidoreductase subunit B
2041	 67.06	+1	2254128..2255909	-	593	39997151	-	GSU2053	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
2042	 38.99	-2	2255951..2256109	+	52	39997152	-	GSU2054	-	hypothetical protein
2043	 61.35	0	2256159..2257193	+	344	39997153	-	GSU2055	-	extracellular solute-binding protein
2044	 61.90	0	2257267..2257749	+	160	39997154	-	GSU2056	-	tripartite ATP-independent periplasmic transporters, DctQ component, putative
2045	 62.32	0	2257785..2259050	+	421	39997155	-	GSU2057	-	hypothetical protein
2046	 48.98	-2	2259039..2259185	-	48	39997156	-	GSU2058	-	hypothetical protein
2047	 58.13	0	2259172..2259651	+	159	39997157	-	GSU2059	-	hypothetical protein
2048	 64.21	0	2259760..2261100	-	446	39997158	-	GSU2060	-	pmbA protein, putative
2049	 58.44	0	2261110..2261559	-	149	39997159	-	GSU2061	-	acetyltransferase
2050	 58.74	0	2261604..2262524	-	306	39997160	-	GSU2062	-	GGDEF domain-containing protein
2051	 61.75	0	2262514..2263368	-	284	39997161	-	GSU2063	-	HD domain-containing protein
2052	 65.83	0	2263755..2265431	-	558	39997162	recN	GSU2064	-	DNA repair protein RecN
2053	 62.92	0	2265431..2266285	-	284	39997163	ppnK	GSU2065	-	ATP-NAD kinase
2054	 60.29	0	2266427..2268937	+	836	39997164	glgP	GSU2066	-	glycogen phosphorylase
2055	 61.07	0	2268975..2270297	+	440	39997165	-	GSU2067	-	recombination factor protein RarA
2056	 62.40	0	2270294..2271253	+	319	39997166	-	GSU2068	-	6-phosphofructokinase
2057	 63.54	0	2271279..2271917	-	212	39997167	-	GSU2069	-	HAD family hydrolase
2058	 59.80	0	2271901..2272206	-	101	39997168	-	GSU2070	-	HNH endonuclease family protein
2059	 62.67	0	2272223..2272672	-	149	39997169	rnhA	GSU2071	-	ribonuclease HI
2060	 58.81	0	2272656..2273279	-	207	39997170	-	GSU2072	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
2061	 61.14	0	2273510..2278849	-	1779	39997171	-	GSU2073	-	EF hand domain/PKD domain-containing protein
2062	 58.07	0	2278904..2279869	-	321	39997172	-	GSU2074	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
2063	 62.55	0	2279884..2281341	-	485	39997173	-	GSU2075	-	subtilisin
2064	 60.83	0	2281463..2282884	-	473	39997174	-	GSU2076	-	cytochrome c family protein
2065	 42.39	-2	2283949..2284191	+	80	39997175	-	GSU2077	-	hypothetical protein
2066	 56.68	0	2284208..2285308	-	366	39997176	rodA	GSU2078	-	rod shape-determining protein RodA
2067	 60.99	0	2285312..2287231	-	639	39997177	mrdA	GSU2079	-	penicillin-binding protein 2
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.