IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
137	 62.10	0	151068..151505	+	145	39995247	-	GSU0136	-	hypothetical protein
138	 58.66	0	151656..152354	-	232	39995248	-	GSU0137	-	hypothetical protein
139	 59.90	0	152504..154084	+	526	39995249	prfC	GSU0138	-	peptide chain release factor 3
140	 62.11	0	154312..154926	+	204	39995250	-	GSU0139	-	hypothetical protein
141	 65.60	0	155133..155882	+	249	39995251	-	GSU0140	-	hypothetical protein
142	 65.55	0	155890..157056	+	388	39995252	-	GSU0141	-	hypothetical protein
143	 65.07	0	157068..157505	+	145	39995253	pgpA	GSU0142	-	phosphatidylglycerophosphatase A
144	 68.92	+1	157502..158743	+	413	39995254	-	GSU0143	-	competence/damage-inducible protein CinA
145	 62.02	0	158787..160916	+	709	39995255	-	GSU0144	-	sensory box histidine kinase
146	 62.93	0	161049..162065	+	338	39995256	recA	GSU0145	-	recombinase A
147	 63.82	0	162069..163229	+	386	39995257	pilT-1	GSU0146	-	twitching motility protein PilT
148	 68.54	+1	163258..163737	+	159	39995258	recX	GSU0147	-	regulatory protein RecX
149	 64.88	0	163809..166436	+	875	39995259	alaS	GSU0148	-	alanyl-tRNA synthetase
150	 60.93	0	166459..167574	+	371	39995260	-	GSU0149	-	sensor histidine kinase/response regulator
151	 63.48	0	167708..168586	+	292	39995261	argB	GSU0150	-	acetylglutamate kinase
152	 64.33	0	168667..169866	+	399	39995262	argD	GSU0151	-	acetylornithine aminotransferase
153	 64.04	0	169863..170774	+	303	39995263	argF	GSU0152	-	ornithine carbamoyltransferase
154	 62.82	0	170807..172027	+	406	39995264	argG	GSU0153	-	argininosuccinate synthase
155	 60.59	0	172194..172637	+	147	39995265	-	GSU0154	-	mutT/nudix family protein
156	 63.57	0	172648..173811	+	387	39995266	-	GSU0155	-	hypothetical protein
157	 63.62	0	173833..175209	+	458	39995267	argH	GSU0156	-	argininosuccinate lyase
158	 68.86	+1	175248..176021	+	257	39995268	-	GSU0157	-	fibronectin type III domain-containing protein
159	 63.72	0	176159..177412	+	417	39995269	lysA	GSU0158	-	diaminopimelate decarboxylase
160	 63.69	0	177446..178318	+	290	39995270	dapA	GSU0159	-	dihydrodipicolinate synthase
161	 65.42	0	178340..179140	+	266	39995271	dapB	GSU0160	-	dihydrodipicolinate reductase
162	 45.74	-2	179230..179358	+	42	39995272	-	GSU0161	-	hypothetical protein
163	 62.77	0	179342..180574	+	410	39995273	-	GSU0162	-	L,L-diaminopimelate aminotransferase
164	 52.08	-1	180697..180984	+	95	39995274	-	GSU0163	-	hypothetical protein
165	 56.20	0	180981..181343	+	120	39995275	-	GSU0164	-	hypothetical protein
166	 39.23	-2	181411..182766	+	451	39995276	-	GSU0165	-	hypothetical protein
167	 39.39	-2	182895..182993	-	32	39995277	-	GSU0166	-	hypothetical protein
168	 59.15	0	183332..183637	+	101	39995278	-	GSU0167	-	hypothetical protein
169	 58.44	0	183883..185049	+	388	39995279	-	GSU0168	-	Fic family protein
170	 62.70	0	185171..186808	+	545	39995280	-	GSU0169	-	ABC transporter, ATP-binding protein
171	 64.60	0	186838..187320	+	160	39995281	-	GSU0170	-	hypothetical protein
172	 69.08	+1	187341..187796	+	151	39995282	-	GSU0171	-	YaiI/YqxD family protein
173	 58.47	0	188001..188378	+	125	39995283	-	GSU0172	-	hypothetical protein
174	 68.38	+1	188832..189356	+	174	39995284	-	GSU0173	-	hypothetical protein
175	 63.98	0	189553..191115	-	520	39995285	-	GSU0174	-	acetyl-CoA hydrolase/transferase family protein
176	 66.83	+1	191349..191960	+	203	39995286	-	GSU0175	-	TetR family transcriptional regulator
177	 62.40	0	192082..192456	+	124	39995287	-	GSU0176	-	hypothetical protein
178	 62.26	0	192466..192987	+	173	39995288	-	GSU0177	-	acetyltransferase
179	 58.84	0	193093..193437	-	114	39995289	-	GSU0178	-	hypothetical protein
180	 61.32	0	193592..194227	+	211	39995290	-	GSU0179	-	NADPH-dependent FMN reductase domain-containing protein
181	 59.22	0	194383..194892	+	169	39995291	-	GSU0180	-	hypothetical protein
182	 60.00	0	194938..195867	-	309	39995292	-	GSU0181	-	putative lipoprotein
183	 62.05	0	196023..196325	-	100	39995293	-	GSU0182	-	putative lipoprotein
184	 63.38	0	196424..197731	-	435	39995294	-	GSU0183	-	putative lipoprotein
185	 67.28	+1	198316..198963	+	215	39995295	-	GSU0184	-	HAD family hydrolase
186	 65.68	0	198989..200209	-	406	39995296	-	GSU0185	-	hypothetical protein
187	 64.66	0	200953..201300	-	115	39995297	-	GSU0187	-	hypothetical protein
188	 60.29	0	201297..201641	-	114	39995298	-	GSU0188	-	hypothetical protein
189	 63.92	0	201957..203339	+	460	39995299	dbpA	GSU0189	-	ATP-dependent RNA helicase DbpA
190	 51.28	-1	203317..203628	-	103	39995300	-	GSU0190	-	hypothetical protein
191	 47.26	-2	203766..203966	-	66	39995301	-	GSU0191	-	cold-shock domain-contain protein
192	 52.67	-1	204369..204611	+	80	39995302	-	GSU0192	-	hypothetical protein
193	 66.40	+1	204852..205991	-	379	39995303	-	GSU0193	-	L-sorbosone dehydrogenase, putative
194	 69.25	+1	206161..207243	+	360	39995304	-	GSU0194	-	hypothetical protein
195	 57.99	0	207298..207516	+	72	39995305	-	GSU0195	-	hypothetical protein
196	 66.05	0	207610..208098	-	162	39995306	-	GSU0196	-	thioesterase family protein
197	 67.71	+1	208179..208943	-	254	39995307	-	GSU0197	-	short chain dehydrogenase/reductase family oxidoreductase
198	 64.13	0	209066..209656	+	196	39995308	-	GSU0198	-	hypothetical protein
199	 53.11	-1	209939..210115	-	58	39995309	-	GSU0199	-	hypothetical protein
200	 64.12	0	210179..210649	+	156	39995310	iorA	GSU0200	-	isoquinoline 1-oxidoreductase, alpha subunit
201	 66.99	+1	210646..212817	+	723	39995311	iorB	GSU0201	-	isoquinoline 1-oxidoreductase, beta subunit
202	 68.56	+1	212880..213620	+	246	39995312	-	GSU0202	-	hypothetical protein
203	 69.44	+1	213617..214228	+	203	39995313	-	GSU0203	-	hypothetical protein
204	 64.39	0	214293..215651	+	452	39995314	-	GSU0204	-	radical SAM domain-containing protein
205	 60.93	0	215676..216302	+	208	39995315	-	GSU0205	-	TetR family transcriptional regulator
206	 64.89	0	216299..217201	+	300	39995316	-	GSU0206	-	zinc transporter ZupT
207	 53.23	-1	217397..217597	+	66	39995317	-	GSU0207	-	cold-shock domain-contain protein
208	 63.42	0	217769..218569	+	266	39995318	-	GSU0208	-	hypothetical protein
209	 52.82	-1	218729..218923	+	64	39995319	-	GSU0209	-	hypothetical protein
210	 61.16	0	219077..220039	+	320	39995320	-	GSU0210	-	hypothetical protein
211	 58.88	0	220056..220967	+	303	39995321	-	GSU0211	-	ABC transporter, permease protein, putative
212	 57.89	0	220960..221757	+	265	39995322	-	GSU0212	-	ABC transporter, ATP-binding protein
213	 68.37	+1	222018..223307	+	429	39995323	-	GSU0213	-	radical SAM domain-containing protein
214	 60.81	0	223673..224560	+	295	39995324	-	GSU0214	-	hypothetical protein
215	 58.65	0	224725..225597	+	290	39995325	folD-1	GSU0215	-	folD bifunctional protein
216	 56.48	0	225681..225896	-	71	39995326	-	GSU0216	-	hypothetical protein
217	 64.90	0	226424..226990	+	188	39995327	-	GSU0217	-	nitroreductase family protein
218	 63.44	0	227086..227922	+	278	39995328	-	GSU0218	-	hypothetical protein
219	 62.79	0	227919..229544	+	541	39995329	-	GSU0219	-	cytochrome c oxidase, subunit I
220	 63.52	0	229541..230143	+	200	39995330	-	GSU0220	-	cytochrome c oxidase, subunit III
221	 62.89	0	230160..230450	+	96	39995331	-	GSU0221	-	cytochrome c oxidase, subunit IV
222	 62.63	0	230508..231374	+	288	39995332	-	GSU0222	-	cytochrome c oxidase, subunit II
223	 70.60	+1	231371..232183	+	270	39995333	-	GSU0223	-	protoheme IX farnesyl transferase, putative
224	 63.36	0	232204..232536	-	110	39995334	-	GSU0224	-	hypothetical protein
225	 62.50	0	232553..232768	+	71	39995335	-	GSU0225	-	hypothetical protein
226	 63.78	0	232930..234558	+	542	39995336	-	GSU0226	-	L-lactate permease, putative
227	 69.50	+1	234575..235492	+	305	39995337	-	GSU0227	-	type II DNA modification methyltransferase, putative
228	 61.11	0	235556..236059	-	167	39995338	-	GSU0228	-	peptidyl-prolyl cis-trans isomerase, FKBP-type, putative
229	 63.64	0	236228..237880	+	550	39995339	alkK	GSU0229	-	acyl-CoA synthetase
230	 62.37	0	237886..238956	-	356	39995340	pilT-2	GSU0230	-	twitching motility protein PilT
231	 63.57	0	239002..240777	-	591	39995341	-	GSU0231	-	hypothetical protein
232	 48.15	-2	240866..240973	-	35	39995342	-	GSU0232	-	hypothetical protein
233	 66.82	+1	241033..241692	+	219	39995343	-	GSU0233	-	hypothetical protein
234	 65.31	0	241707..242519	+	270	39995344	-	GSU0234	-	FNT family protein
235	 68.59	+1	242523..244808	-	761	39995345	-	GSU0235	-	S1 RNA-binding domain-containing protein
236	 68.59	+1	244889..245305	-	138	39995346	-	GSU0236	-	hypothetical protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.