IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1573	 61.96	0	1736253..1736975	-	240	39996683	bioD	GSU1583	-	dethiobiotin synthase
1574	 60.51	0	1736968..1737957	-	329	39996684	bioB	GSU1584	-	biotin synthetase
1575	 56.67	0	1738189..1738668	+	159	39996685	-	GSU1585	-	hypothetical protein
1576	 58.64	0	1738694..1739851	+	385	39996686	nusA	GSU1586	-	transcription elongation factor NusA
1577	 58.09	0	1739855..1740472	+	205	39996687	-	GSU1587	-	ribosomal protein L7Ae family protein
1578	 59.95	0	1740450..1743101	+	883	39996688	infB	GSU1588	-	translation initiation factor IF-2
1579	 53.78	-1	1743169..1743525	+	118	39996689	rbfA	GSU1589	-	ribosome-binding factor A
1580	 56.26	0	1743518..1744468	+	316	39996690	-	GSU1590	-	DHH domain-containing protein
1581	 58.47	0	1744474..1745388	+	304	39996691	truB	GSU1591	-	tRNA pseudouridine synthase B
1582	 52.43	-1	1745512..1745778	+	88	39996692	rpsO	GSU1592	-	30S ribosomal protein S15
1583	 58.26	0	1746052..1748145	+	697	39996693	pnp	GSU1593	-	polynucleotide phosphorylase/polyadenylase
1584	 53.38	-1	1748190..1749446	+	418	39996694	-	GSU1594	-	M16 family peptidase
1585	 59.11	0	1749458..1749907	+	149	39996695	dut	GSU1595	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1586	 54.41	-1	1749952..1750563	+	203	39996696	-	GSU1596	-	Sua5/YciO/YrdC/YwlC family protein
1587	 57.30	0	1750565..1750927	+	120	39996697	-	GSU1597	-	hypothetical protein
1588	 52.96	-1	1751112..1751651	+	179	39996698	-	GSU1598	-	hypothetical protein
1589	 55.19	-1	1751673..1751855	+	60	39996699	rpmF	GSU1599	-	50S ribosomal protein L32
1590	 54.56	-1	1751901..1752941	+	346	39996700	plsX	GSU1600	-	putative glycerol-3-phosphate acyltransferase PlsX
1591	 57.77	0	1752957..1753934	+	325	39996701	fabH-2	GSU1601	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1592	 61.69	0	1753957..1754880	+	307	39996702	fabD	GSU1602	-	malonyl CoA-acyl carrier protein transacylase
1593	 58.84	0	1754891..1755631	+	246	39996703	fabG-2	GSU1603	-	3-oxoacyl-(acyl-carrier-protein) reductase
1594	 50.43	-1	1755718..1755951	+	77	39996704	acpP-2	GSU1604	-	acyl carrier protein
1595	 58.07	0	1756090..1757322	+	410	39996705	fabF-2	GSU1605	-	3-oxoacyl-(acyl-carrier-protein) synthase II
1596	 61.52	0	1757333..1757779	+	148	39996706	-	GSU1606	-	ribose 5-phosphate isomerase B, putative
1597	 58.01	0	1757872..1759119	+	415	39996707	glyA	GSU1607	-	serine hydroxymethyltransferase
1598	 58.66	0	1759240..1760013	+	257	39996708	-	GSU1608	-	hypothetical protein
1599	 58.27	0	1760201..1761700	+	499	39996709	-	GSU1609	-	outer membrane efflux protein
1600	 61.77	0	1761729..1762913	+	394	39996710	-	GSU1610	-	RND family efflux transporter MFP subunit
1601	 59.79	0	1762910..1766008	+	1032	39996711	-	GSU1611	-	AcrB/AcrD/AcrF family protein
1602	 60.75	0	1766005..1766748	+	247	39996712	gpm	GSU1612	-	phosphoglycerate mutase
1603	 60.72	0	1766767..1767624	-	285	39996713	-	GSU1613	-	A/G-specific adenine glycosylase, putative
1604	 56.79	0	1767621..1768025	-	134	39996714	-	GSU1614	-	CoA-binding protein
1605	 54.38	-1	1768108..1769385	-	425	39996715	-	GSU1615	-	hypothetical protein
1606	 54.55	-1	1769602..1770831	-	409	39996716	-	GSU1616	-	ImpB/MucB/SamB family protein
1607	 57.03	0	1770881..1771492	-	203	39996717	lexA-2	GSU1617	-	LexA repressor
1608	 58.56	0	1771700..1772563	-	287	39996718	-	GSU1618	-	hypothetical protein
1609	 55.00	-1	1772610..1772969	-	119	39996719	cheY-4	GSU1619	-	chemotaxis protein CheY
1610	 59.61	0	1773123..1775249	-	708	39996720	-	GSU1620	-	iron-sulfur cluster binding protein, putative
1611	 58.53	0	1775253..1775891	-	212	39996721	-	GSU1621	-	hypothetical protein
1612	 58.41	0	1776004..1777953	+	649	39996722	-	GSU1622	-	L-lactate permease
1613	 62.08	0	1778047..1779420	+	457	39996723	-	GSU1623	-	glycolate oxidase subunit GlcD, putative
1614	 61.63	0	1779431..1780681	+	416	39996724	-	GSU1624	-	glycolate oxidase iron-sulfur subunit, putative
1615	 46.24	-2	1780730..1780822	-	30	39996725	-	GSU1625	-	hypothetical protein
1616	 55.37	0	1780852..1781577	+	241	39996726	-	GSU1626	-	GntR family transcriptional regulator
1617	 59.89	0	1781917..1782285	-	122	39996727	secG	GSU1627	-	preprotein translocase subunit SecG
1618	 57.71	0	1782373..1784337	-	654	39996728	-	GSU1628	-	phosphoglycerate kinase/triosephosphate isomerase
1619	 57.49	0	1784444..1785445	-	333	39996729	gap	GSU1629	-	glyceraldehyde 3-phosphate dehydrogenase 1
1620	 52.74	-1	1785617..1787749	+	710	39996730	-	GSU1630	-	sensory box histidine kinase
1621	 59.79	0	1787907..1788677	+	256	39996731	-	GSU1631	-	metallo-beta-lactamase family protein
1622	 58.87	0	1788897..1790192	+	431	39996732	purB	GSU1632	-	adenylosuccinate lyase
1623	 55.98	0	1790185..1791279	+	364	39996733	-	GSU1633	-	hypothetical protein
1624	 61.45	0	1791280..1794270	+	996	39996734	-	GSU1634	-	phosphoribosylformylglycinamidine synthase II, putative
1625	 59.78	0	1794274..1795101	+	275	39996735	-	GSU1635	-	phosphoribosylformylglycinamidine synthase I, putative
1626	 59.54	0	1795135..1796538	+	467	39996736	purF	GSU1636	-	amidophosphoribosyltransferase
1627	 57.19	0	1796556..1797104	+	182	39996737	pyrE	GSU1637	-	orotate phosphoribosyltransferase
1628	 60.09	0	1797177..1797875	+	232	39996738	-	GSU1638	-	hypothetical protein
1629	 59.37	0	1797963..1798373	+	136	39996739	-	GSU1639	-	Rrf2 family protein
1630	 58.24	0	1798517..1799869	+	450	39996740	cydA	GSU1640	-	cytochrome d ubiquinol oxidase, subunit I
1631	 58.50	0	1799871..1800899	+	342	39996741	cydB	GSU1641	-	cytochrome d ubiquinol oxidase, subunit II
1632	 53.13	-1	1801229..1801723	-	164	39996742	-	GSU1642	-	hypothetical protein
1633	 58.89	0	1801850..1802800	+	316	39996743	-	GSU1643	-	GGDEF/response regulator receiver domain-containing protein
1634	 59.11	0	1802943..1804622	+	559	39996744	-	GSU1644	-	putative ABC transporter ATP-binding protein
1635	 56.04	0	1804716..1805741	-	341	39996745	-	GSU1646	-	putative lipoprotein
1636	 41.41	-2	1804900..1804998	+	32	39996746	-	GSU1645	-	hypothetical protein
1637	 51.74	-1	1805933..1806133	-	66	39996747	-	GSU1647	-	hypothetical protein
1638	 57.56	0	1806404..1807216	-	270	39996748	-	GSU1648	-	cytochrome c family protein
1639	 58.51	0	1807213..1808316	-	367	39996749	-	GSU1649	-	cytochrome b/b6
1640	 62.38	0	1808325..1808744	-	139	39996750	-	GSU1650	-	cytochrome b/b6 complex, iron-sulfur subunit
1641	 56.48	0	1809102..1810043	+	313	39996751	fbP-1	GSU1651	-	fructose-1,6-bisphosphatase
1642	 57.41	0	1810079..1810348	+	89	39996752	-	GSU1652	-	hypothetical protein
1643	 59.01	0	1810491..1811927	+	478	39996753	-	GSU1653	-	sigma-54 dependent DNA-binding response regulator
1644	 57.24	0	1812034..1813083	-	349	39996754	-	GSU1654	-	response regulator, putative
1645	 56.40	0	1813112..1815586	-	824	39996755	-	GSU1655	-	sensory box histidine kinase/response regulator
1646	 53.44	-1	1815737..1816999	-	420	39996756	-	GSU1656	-	sensory box/response regulator
1647	 58.85	0	1817400..1819715	+	771	39996757	-	GSU1657	-	DNA internalization-related competence protein ComEC/Rec2
1648	 54.83	-1	1819776..1821152	+	458	39996758	-	GSU1658	-	response regulator/GGDEF domain-containing protein
1649	 58.29	0	1821195..1822436	+	413	39996759	hisS	GSU1659	-	histidyl-tRNA synthetase
1650	 60.89	0	1822673..1825216	+	847	39996760	acnB	GSU1660	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1651	 58.89	0	1825323..1825952	-	209	39996761	-	GSU1661	-	hypothetical protein
1652	 54.79	-1	1826052..1826969	-	305	39996762	-	GSU1662	-	hypothetical protein
1653	 60.08	0	1827286..1828257	+	323	39996763	-	GSU1663	-	phosphorylase family protein
1654	 62.32	0	1828327..1828740	+	137	39996764	-	GSU1664	-	hypothetical protein
1655	 62.50	0	1828742..1829557	-	271	39996765	-	GSU1665	-	rhomboid family protein
1656	 58.44	0	1829826..1830056	+	76	39996766	-	GSU1666	-	iron-sulfur cluster-binding protein
1657	 56.63	0	1830060..1830368	+	102	39996767	-	GSU1667	-	hypothetical protein
1658	 57.85	0	1830384..1830644	-	86	39996768	-	GSU1668	-	hypothetical protein
1659	 51.52	-1	1830814..1831077	+	87	39996769	-	GSU1669	-	hypothetical protein
1660	 55.74	0	1831077..1831433	+	118	39996770	-	GSU1670	-	putative lipoprotein
1661	 55.83	0	1831449..1832417	-	322	39996771	-	GSU1671	-	response regulator/GGDEF domain-containing protein
1662	 60.37	0	1832580..1833563	+	327	39996772	hprA	GSU1672	-	glycerate dehydrogenase
1663	 46.74	-2	1833619..1833879	-	86	39996773	-	GSU1673	-	hypothetical protein
1664	 56.46	0	1833869..1834162	+	97	39996774	-	GSU1674	-	hypothetical protein
1665	 57.49	0	1834264..1834710	-	148	39996775	-	GSU1675	-	hypothetical protein
1666	 57.63	0	1834279..1834743	+	154	39996776	-	GSU1676	-	hypothetical protein
1667	 61.05	0	1834912..1837386	+	824	39996777	-	GSU1677	-	AMP-binding enzyme/acyltransferase
1668	 61.74	0	1837387..1840002	+	871	39996778	-	GSU1678	-	cation transporter E1-E2 family ATPase
1669	 57.22	0	1840115..1841437	-	440	39996779	-	GSU1679	-	hypothetical protein
1670	 54.86	-1	1841476..1841907	-	143	39996780	-	GSU1680	-	hypothetical protein
1671	 56.68	0	1841919..1843010	-	363	39996781	-	GSU1681	-	cobyrinic acid a,c-diamide synthase family protein
1672	 58.95	0	1843258..1843620	+	120	39996782	-	GSU1682	-	putative lipoprotein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.