IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1449	 61.49	0	1598892..1599953	+	353	39996559	ispG	GSU1459	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
1450	 61.76	0	1599970..1601682	+	570	39996560	proS	GSU1460	-	prolyl-tRNA synthetase
1451	 63.19	0	1601706..1602425	+	239	39996561	pyrF	GSU1461	-	orotidine 5`-phosphate decarboxylase
1452	 60.57	0	1602445..1603182	+	245	39996562	-	GSU1462	-	RNA methyltransferase
1453	 56.36	0	1603748..1605532	+	594	39996563	aspS	GSU1463	-	aspartyl-tRNA synthetase
1454	 57.39	0	1605546..1606235	+	229	39996564	-	GSU1464	-	LysM domain-containing protein
1455	 54.43	-1	1606538..1608760	+	740	39996565	icd	GSU1465	-	isocitrate dehydrogenase, NADP-dependent
1456	 58.07	0	1608804..1609757	+	317	39996566	mdh	GSU1466	-	malate dehydrogenase
1457	 48.72	-2	1609952..1610146	+	64	39996567	-	GSU1467	-	iron-sulfur cluster-binding protein
1458	 56.70	0	1610170..1611303	+	377	39996568	-	GSU1468	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1459	 57.42	0	1611306..1612127	+	273	39996569	-	GSU1469	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1460	 56.47	0	1612153..1612701	+	182	39996570	-	GSU1470	-	keto/oxoacid ferredoxin oxidoreductase, gamma subunit
1461	 55.36	0	1612857..1614032	+	391	39996571	-	GSU1471	-	HD domain-containing protein
1462	 51.92	-1	1614107..1615069	+	320	39996572	-	GSU1472	-	hypothetical protein
1463	 51.90	-1	1615103..1615840	+	245	39996573	-	GSU1473	-	hypothetical protein
1464	 55.28	-1	1615949..1616563	+	204	39996574	-	GSU1474	-	DedA family protein
1465	 59.90	0	1616582..1617349	+	255	39996575	-	GSU1475	-	RNA methyltransferase
1466	 56.80	0	1617346..1617639	+	97	39996576	-	GSU1476	-	hypothetical protein
1467	 57.61	0	1617666..1618250	+	194	39996577	-	GSU1477	-	LemA family protein
1468	 62.56	0	1618247..1619146	+	299	39996578	-	GSU1478	-	hypothetical protein
1469	 62.20	0	1619163..1619789	+	208	39996579	-	GSU1479	-	hypothetical protein
1470	 59.97	0	1619796..1621349	-	517	39996580	-	GSU1480	-	EmrB/QacA family drug resistance transporter
1471	 64.25	0	1621362..1622480	-	372	39996581	-	GSU1481	-	multidrug resistance protein, putative
1472	 61.90	0	1622483..1623763	-	426	39996582	-	GSU1482	-	outer membrane efflux protein
1473	 58.22	0	1623741..1624190	-	149	39996583	-	GSU1483	-	MarR family transcriptional regulator
1474	 61.76	0	1624300..1626543	-	747	39996584	-	GSU1484	-	soluble lytic murein transglycosylase, putative
1475	 62.52	0	1626769..1629060	+	763	39996585	-	GSU1485	-	ribonuclease R, putative
1476	 55.71	0	1629155..1630021	+	288	39996586	-	GSU1486	-	MttB family protein
1477	 59.96	0	1630018..1630986	+	322	39996587	ribF	GSU1487	-	riboflavin biosynthesis protein RibF
1478	 62.73	0	1631034..1632023	+	329	39996588	-	GSU1488	-	hypothetical protein
1479	 57.59	0	1632043..1633914	+	623	39996589	-	GSU1489	-	hypothetical protein
1480	 61.44	0	1633917..1634777	+	286	39996590	aroE	GSU1490	-	shikimate 5-dehydrogenase
1481	 58.64	0	1634843..1636549	+	568	39996591	-	GSU1491	-	type IV pilus biogenesis protein PilB
1482	 59.84	0	1636677..1637774	+	365	39996592	pilT-4	GSU1492	-	twitching motility protein PilT
1483	 55.09	-1	1637811..1639028	+	405	39996593	-	GSU1493	-	type IV pilus biogenesis protein PilC
1484	 59.35	0	1639032..1640684	+	550	39996594	-	GSU1494	-	sensory box histidine kinase
1485	 58.46	0	1640718..1642094	+	458	39996595	-	GSU1495	-	sigma-54 dependent DNA-binding response regulator
1486	 49.08	-2	1642257..1642529	+	90	39996596	-	GSU1496	-	pilin domain-containing protein
1487	 44.80	-2	1642557..1642931	+	124	39996597	-	GSU1497	-	hypothetical protein
1488	 43.80	-2	1642999..1644747	+	582	39996598	-	GSU1498	-	hypothetical protein
1489	 49.12	-2	1644744..1645535	+	263	39996599	-	GSU1499	-	hypothetical protein
1490	 50.81	-1	1645589..1646389	+	266	39996600	-	GSU1500	-	hypothetical protein
1491	 49.23	-2	1646403..1647314	+	303	39996601	-	GSU1501	-	ABC transporter, ATP-binding protein
1492	 53.92	-1	1647311..1648165	+	284	39996602	-	GSU1502	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
1493	 56.48	0	1648173..1649075	+	300	39996603	-	GSU1503	-	glycosyl transferase, group 2 family protein
1494	 56.10	0	1649079..1649930	+	283	39996604	-	GSU1504	-	ABC transporter permease
1495	 53.11	-1	1649937..1651205	+	422	39996605	-	GSU1505	-	ABC transporter, ATP-binding protein
1496	 53.54	-1	1651202..1652161	+	319	39996606	-	GSU1506	-	hypothetical protein
1497	 49.64	-2	1652233..1653195	+	320	39996607	-	GSU1507	-	heptosyltransferase family protein, putative
1498	 39.09	-2	1653235..1654380	+	381	39996608	-	GSU1508	-	hypothetical protein
1499	 37.55	-2	1654388..1655383	+	331	39996609	-	GSU1509	-	glycosyl transferase, group 2 family protein
1500	 46.41	-2	1655522..1656454	+	310	39996610	-	GSU1510	-	glycosyl transferase, group 2 family protein
1501	 41.60	-2	1657352..1658500	+	382	39996611	-	GSU1511	-	glycosyl transferase, group 1 family protein
1502	 57.80	0	1658573..1659937	+	454	39996612	-	GSU1512	-	amine oxidase, flavin-containing
1503	 50.59	-1	1659934..1660860	+	308	39996613	-	GSU1513	-	hypothetical protein
1504	 59.89	0	1660857..1661948	+	363	39996614	-	GSU1514	-	heptosyltransferase family protein
1505	 59.08	0	1662153..1664063	+	636	39996615	thrS	GSU1515	-	threonyl-tRNA synthetase
1506	 54.72	-1	1664075..1664593	+	172	39996616	infC	GSU1516	-	translation initiation factor IF-3
1507	 53.54	-1	1664631..1664828	+	65	39996617	rpmI	GSU1517	-	50S ribosomal protein L35
1508	 57.06	0	1664918..1665271	+	117	39996618	rplT	GSU1518	-	50S ribosomal protein L20
1509	 59.22	0	1665346..1666365	+	339	39996619	pheS	GSU1519	-	phenylalanyl-tRNA synthetase, alpha subunit
1510	 60.39	0	1666433..1668838	+	801	39996620	pheT	GSU1520	-	phenylalanyl-tRNA synthetase, beta subunit
1511	 50.72	-1	1668933..1669208	+	91	39996621	ihfA-1	GSU1521	-	integration host factor, alpha subunit
1512	 54.80	-1	1669226..1669579	+	117	39996622	-	GSU1522	-	transcriptional regulator, putative
1513	 59.82	0	1669765..1670553	+	262	39996623	surE	GSU1523	-	stationary-phase survival protein SurE
1514	 60.22	0	1670581..1671231	+	216	39996624	pcM	GSU1524	-	protein-L-isoaspartate O-methyltransferase
1515	 57.35	0	1671264..1672250	+	328	39996625	-	GSU1525	-	sigma-70 family RNA polymerase sigma factor
1516	 57.95	0	1672285..1672800	+	171	39996626	apt	GSU1526	-	adenine phosphoribosyltransferase
1517	 59.84	0	1673198..1674487	+	429	39996627	-	GSU1527	-	hypothetical protein
1518	 58.19	0	1674735..1675631	+	298	39996628	-	GSU1528	-	ABC transporter, periplasmic substrate-binding protein
1519	 58.75	0	1675821..1678232	+	803	39996629	-	GSU1529	-	sensory box histidine kinase/response regulator
1520	 62.67	0	1678319..1679194	-	291	39996630	hisG	GSU1530	-	ATP phosphoribosyltransferase
1521	 59.26	0	1679191..1679568	-	125	39996631	hisI	GSU1531	-	phosphoribosyl-AMP cyclohydrolase
1522	 69.88	+1	1679914..1680255	+	113	39996632	-	GSU1532	-	hypothetical protein
1523	 70.52	+1	1680276..1683440	+	1054	39996633	recC	GSU1533	-	exodeoxyribonuclease V, gamma subunit
1524	 71.18	+1	1683437..1687051	+	1204	39996634	recB	GSU1534	-	exodeoxyribonuclease V, beta subunit
1525	 69.74	+1	1687048..1688835	+	595	39996635	recD	GSU1535	-	exodeoxyribonuclease V, alpha subunit
1526	 72.58	+2	1688874..1689566	-	230	39996636	-	GSU1536	-	hypothetical protein
1527	 66.36	+1	1689563..1691185	-	540	39996637	-	GSU1537	-	general secretion pathway protein-related protein
1528	 65.08	0	1691494..1692753	+	419	39996638	-	GSU1538	-	methylamine utilization protein MauG, putative
1529	 67.65	+1	1692893..1693708	+	271	39996639	xth	GSU1539	-	exonuclease III
1530	 42.72	-2	1694228..1695442	+	404	39996640	-	GSU1540	-	putative lipoprotein
1531	 53.23	-1	1695669..1696472	+	267	39996641	-	GSU1541	-	hypothetical protein
1532	 54.76	-1	1696510..1696803	-	97	39996642	-	GSU1542	-	Cro/CI family transcriptional regulator
1533	 51.95	-1	1696802..1697134	+	110	39996643	-	GSU1543	-	hypothetical protein
1534	 63.31	0	1697206..1697652	+	148	39996644	-	GSU1544	-	hypothetical protein
1535	 62.28	0	1697747..1698361	+	204	39996645	-	GSU1545	-	amino acid transporter LysE
1536	 56.75	0	1698540..1699406	+	288	39996646	-	GSU1546	-	hypothetical protein
1537	 67.44	+1	1699486..1700907	+	473	39996647	-	GSU1547	-	TPR domain-containing protein
1538	 65.78	0	1701044..1701493	+	149	39996648	-	GSU1548	-	hypothetical protein
1539	 66.34	+1	1701521..1702129	+	202	39996649	-	GSU1549	-	putative lipoprotein
1540	 65.69	0	1702101..1702304	-	67	39996650	-	GSU1550	-	4-oxalocrotonate tautomerase family protein
1541	 63.44	0	1702598..1704583	+	661	39996651	-	GSU1551	-	signal domain-containing protein
1542	 62.71	0	1704642..1705172	+	176	39996652	-	GSU1552	-	hypothetical protein
1543	 60.10	0	1705183..1705563	+	126	39996653	-	GSU1553	-	hypothetical protein
1544	 63.85	0	1705571..1706740	+	389	39996654	-	GSU1554	-	GGDEF domain-containing protein
1545	 59.96	0	1706780..1710118	-	1112	39996655	-	GSU1555	-	sensory box histidine kinase/response regulator
1546	 60.32	0	1710355..1711284	-	309	39996656	-	GSU1556	-	hypothetical protein
1547	 60.24	0	1711580..1712404	+	274	39996657	-	GSU1557	-	mechanosensitive ion channel family protein
1548	 67.59	+1	1712555..1712662	+	35	39996658	-	GSU1558	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.