IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1395	 60.96	0	1545736..1546698	-	320	39996505	-	GSU1404	-	radical SAM domain-containing protein
1396	 60.61	0	1546808..1547104	+	98	39996506	-	GSU1405	-	hypothetical protein
1397	 62.00	0	1547086..1547235	-	49	39996507	-	GSU1406	-	hypothetical protein
1398	 59.26	0	1547222..1547356	+	44	39996508	-	GSU1407	-	hypothetical protein
1399	 63.29	0	1547328..1548215	-	295	39996509	-	GSU1408	-	ParA family protein
1400	 59.85	0	1548282..1548677	-	131	39996510	-	GSU1409	-	NifU-like domain-containing protein
1401	 60.22	0	1548670..1549026	-	118	39996511	-	GSU1410	-	hypothetical protein
1402	 61.75	0	1549047..1550042	-	331	39996512	-	GSU1411	-	sodium/bile acid symporter family protein
1403	 60.10	0	1550065..1550475	-	136	39996513	-	GSU1412	-	hypothetical protein
1404	 62.88	0	1550474..1550605	+	43	39996514	-	GSU1413	-	hypothetical protein
1405	 58.46	0	1551250..1553784	+	844	39996515	-	GSU1414	-	sensory box histidine kinase/response regulator
1406	 56.57	0	1554011..1554406	+	131	39996516	-	GSU1415	-	response regulator
1407	 64.33	0	1554933..1555232	+	99	39996517	-	GSU1416	-	iron-sulfur cluster-binding protein
1408	 56.81	0	1555521..1555946	-	141	39996518	-	GSU1417	-	response regulator
1409	 59.83	0	1555933..1556283	-	116	39996519	-	GSU1418	-	hypothetical protein
1410	 61.07	0	1556494..1556922	+	142	39996520	-	GSU1419	-	Cro/CI family transcriptional regulator
1411	 61.99	0	1557042..1557725	+	227	39996521	tylA	GSU1420	-	hemolysin A
1412	 62.60	0	1557739..1558869	+	376	39996522	-	GSU1421	-	nuclease SbcCD, D subunit, putative
1413	 63.17	0	1558869..1561043	+	724	39996523	-	GSU1422	-	nuclease SbcCD, C subunit, putative
1414	 57.97	0	1561021..1561365	+	114	39996524	-	GSU1423	-	HIT family protein
1415	 57.45	0	1561390..1561953	+	187	39996525	-	GSU1424	-	hypothetical protein
1416	 60.15	0	1562603..1563385	+	260	39996526	lgt	GSU1425	-	prolipoprotein diacylglyceryl transferase
1417	 56.67	0	1563394..1563843	-	149	39996527	-	GSU1426	-	rsbW protein, putative
1418	 53.27	-1	1563855..1564190	-	111	39996528	-	GSU1427	-	anti-anti-sigma factor
1419	 58.87	0	1564814..1567546	-	910	39996529	-	GSU1429	-	hypothetical protein
1420	 50.78	-1	1567543..1567800	-	85	39996530	-	GSU1430	-	hypothetical protein
1421	 61.43	0	1567785..1569368	-	527	39996531	-	GSU1431	-	hypothetical protein
1422	 57.32	0	1569651..1571372	+	573	39996532	-	GSU1432	-	TPR domain-containing protein
1423	 62.15	0	1571369..1572985	+	538	39996533	-	GSU1433	-	peptide ABC transporter, periplasmic peptide-binding protein
1424	 61.06	0	1572987..1573967	+	326	39996534	-	GSU1434	-	peptide ABC transporter, permease protein
1425	 63.02	0	1573971..1574819	+	282	39996535	-	GSU1435	-	peptide ABC transporter, permease protein
1426	 58.10	0	1574846..1575370	+	174	39996536	-	GSU1436	-	hypothetical protein
1427	 57.99	0	1575391..1576185	+	264	39996537	-	GSU1437	-	M48 family peptidase
1428	 60.07	0	1576188..1577066	+	292	39996538	-	GSU1438	-	hypothetical protein
1429	 62.64	0	1577012..1578055	-	347	39996539	-	GSU1439	-	hypothetical protein
1430	 62.99	0	1577267..1578244	+	325	39996540	-	GSU1440	-	hypothetical protein
1431	 58.60	0	1578257..1578541	+	94	39996541	-	GSU1441	-	ferredoxin family protein
1432	 54.70	-1	1578631..1579332	+	233	39996542	-	GSU1442	-	carbonic anhydrase family protein
1433	 55.17	-1	1579416..1581380	-	654	39996543	-	GSU1443	-	sensor histidine kinase/response regulator
1434	 59.73	0	1581389..1582282	-	297	39996544	-	GSU1444	-	hypothetical protein
1435	 55.72	0	1582943..1584724	+	593	39996545	-	GSU1445	-	TonB-dependent receptor, putative
1436	 60.44	0	1585073..1586404	+	443	39996546	-	GSU1446	-	radical SAM domain-containing protein
1437	 55.25	-1	1586465..1586683	-	72	39996547	-	GSU1447	-	hypothetical protein
1438	 62.17	0	1586708..1587574	-	288	39996548	-	GSU1448	-	phosphotransferase domain-containing protein
1439	 55.56	0	1587690..1587968	+	92	39996549	-	GSU1449	-	hypothetical protein
1440	 57.46	0	1587992..1588621	+	209	39996550	-	GSU1450	-	endonuclease III, putative
1441	 59.40	0	1588799..1589665	+	288	39996551	-	GSU1451	-	3-hydroxyisobutyrate dehydrogenase family protein
1442	 60.42	0	1589716..1591203	-	495	39996552	-	GSU1452	-	RNA methyltransferase
1443	 56.60	0	1591350..1592462	+	370	39996553	-	GSU1453	-	hypothetical protein
1444	 56.45	0	1592452..1593870	+	472	39996554	-	GSU1454	-	glycosyl transferase, group 2 family protein
1445	 60.61	0	1593842..1594039	+	65	39996555	-	GSU1455	-	hypothetical protein
1446	 63.94	0	1594036..1596453	+	805	39996556	-	GSU1456	-	hypothetical protein
1447	 61.34	0	1596512..1597225	+	237	39996557	-	GSU1457	-	polysaccharide deacetylase domain-containing protein
1448	 62.22	0	1597229..1598803	+	524	39996558	-	GSU1458	-	TPR domain-containing protein
1449	 61.49	0	1598892..1599953	+	353	39996559	ispG	GSU1459	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
1450	 61.76	0	1599970..1601682	+	570	39996560	proS	GSU1460	-	prolyl-tRNA synthetase
1451	 63.19	0	1601706..1602425	+	239	39996561	pyrF	GSU1461	-	orotidine 5`-phosphate decarboxylase
1452	 60.57	0	1602445..1603182	+	245	39996562	-	GSU1462	-	RNA methyltransferase
1453	 56.36	0	1603748..1605532	+	594	39996563	aspS	GSU1463	-	aspartyl-tRNA synthetase
1454	 57.39	0	1605546..1606235	+	229	39996564	-	GSU1464	-	LysM domain-containing protein
1455	 54.43	-1	1606538..1608760	+	740	39996565	icd	GSU1465	-	isocitrate dehydrogenase, NADP-dependent
1456	 58.07	0	1608804..1609757	+	317	39996566	mdh	GSU1466	-	malate dehydrogenase
1457	 48.72	-2	1609952..1610146	+	64	39996567	-	GSU1467	-	iron-sulfur cluster-binding protein
1458	 56.70	0	1610170..1611303	+	377	39996568	-	GSU1468	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1459	 57.42	0	1611306..1612127	+	273	39996569	-	GSU1469	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1460	 56.47	0	1612153..1612701	+	182	39996570	-	GSU1470	-	keto/oxoacid ferredoxin oxidoreductase, gamma subunit
1461	 55.36	0	1612857..1614032	+	391	39996571	-	GSU1471	-	HD domain-containing protein
1462	 51.92	-1	1614107..1615069	+	320	39996572	-	GSU1472	-	hypothetical protein
1463	 51.90	-1	1615103..1615840	+	245	39996573	-	GSU1473	-	hypothetical protein
1464	 55.28	-1	1615949..1616563	+	204	39996574	-	GSU1474	-	DedA family protein
1465	 59.90	0	1616582..1617349	+	255	39996575	-	GSU1475	-	RNA methyltransferase
1466	 56.80	0	1617346..1617639	+	97	39996576	-	GSU1476	-	hypothetical protein
1467	 57.61	0	1617666..1618250	+	194	39996577	-	GSU1477	-	LemA family protein
1468	 62.56	0	1618247..1619146	+	299	39996578	-	GSU1478	-	hypothetical protein
1469	 62.20	0	1619163..1619789	+	208	39996579	-	GSU1479	-	hypothetical protein
1470	 59.97	0	1619796..1621349	-	517	39996580	-	GSU1480	-	EmrB/QacA family drug resistance transporter
1471	 64.25	0	1621362..1622480	-	372	39996581	-	GSU1481	-	multidrug resistance protein, putative
1472	 61.90	0	1622483..1623763	-	426	39996582	-	GSU1482	-	outer membrane efflux protein
1473	 58.22	0	1623741..1624190	-	149	39996583	-	GSU1483	-	MarR family transcriptional regulator
1474	 61.76	0	1624300..1626543	-	747	39996584	-	GSU1484	-	soluble lytic murein transglycosylase, putative
1475	 62.52	0	1626769..1629060	+	763	39996585	-	GSU1485	-	ribonuclease R, putative
1476	 55.71	0	1629155..1630021	+	288	39996586	-	GSU1486	-	MttB family protein
1477	 59.96	0	1630018..1630986	+	322	39996587	ribF	GSU1487	-	riboflavin biosynthesis protein RibF
1478	 62.73	0	1631034..1632023	+	329	39996588	-	GSU1488	-	hypothetical protein
1479	 57.59	0	1632043..1633914	+	623	39996589	-	GSU1489	-	hypothetical protein
1480	 61.44	0	1633917..1634777	+	286	39996590	aroE	GSU1490	-	shikimate 5-dehydrogenase
1481	 58.64	0	1634843..1636549	+	568	39996591	-	GSU1491	-	type IV pilus biogenesis protein PilB
1482	 59.84	0	1636677..1637774	+	365	39996592	pilT-4	GSU1492	-	twitching motility protein PilT
1483	 55.09	-1	1637811..1639028	+	405	39996593	-	GSU1493	-	type IV pilus biogenesis protein PilC
1484	 59.35	0	1639032..1640684	+	550	39996594	-	GSU1494	-	sensory box histidine kinase
1485	 58.46	0	1640718..1642094	+	458	39996595	-	GSU1495	-	sigma-54 dependent DNA-binding response regulator
1486	 49.08	-2	1642257..1642529	+	90	39996596	-	GSU1496	-	pilin domain-containing protein
1487	 44.80	-2	1642557..1642931	+	124	39996597	-	GSU1497	-	hypothetical protein
1488	 43.80	-2	1642999..1644747	+	582	39996598	-	GSU1498	-	hypothetical protein
1489	 49.12	-2	1644744..1645535	+	263	39996599	-	GSU1499	-	hypothetical protein
1490	 50.81	-1	1645589..1646389	+	266	39996600	-	GSU1500	-	hypothetical protein
1491	 49.23	-2	1646403..1647314	+	303	39996601	-	GSU1501	-	ABC transporter, ATP-binding protein
1492	 53.92	-1	1647311..1648165	+	284	39996602	-	GSU1502	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
1493	 56.48	0	1648173..1649075	+	300	39996603	-	GSU1503	-	glycosyl transferase, group 2 family protein
1494	 56.10	0	1649079..1649930	+	283	39996604	-	GSU1504	-	ABC transporter permease
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.