IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1345	 61.23	0	1479360..1479635	+	91	39996455	-	GSU1353	-	prevent-host-death family protein
1346	 59.94	0	1479640..1479951	+	103	39996456	-	GSU1354	-	plasmid stabilization system protein family protein
1347	 56.20	0	1480115..1480477	+	120	39996457	-	GSU1355	-	ISGsu7, transposase OrfA
1348	 56.79	0	1480474..1481364	+	296	39996458	-	GSU1356	-	ISGsu7, transposase OrfB
1349	 45.66	-2	1481427..1481783	+	118	39996459	-	GSU1357	-	hypothetical protein
1350	 58.22	0	1481813..1484215	+	800	39996460	-	GSU1358	-	hypothetical protein
1351	 62.70	0	1484238..1487363	+	1041	39996461	-	GSU1359	-	helicase, putative
1352	 44.56	-2	1487423..1489186	+	587	39996462	-	GSU1360	-	hypothetical protein
1353	 46.34	-2	1489176..1490597	+	473	39996463	-	GSU1361	-	piwi domain-containing protein
1354	 39.17	-2	1490654..1491835	+	393	39996464	-	GSU1362	-	hypothetical protein
1355	 38.15	-2	1491977..1493119	+	380	39996465	-	GSU1363	-	RNA-directed DNA polymerase
1356	 65.65	0	1493171..1494151	+	326	39996466	-	GSU1364	-	HNH endonuclease family protein
1357	 51.10	-1	1494206..1495252	+	348	39996467	-	GSU1365	-	Mrr restriction system protein, putative
1358	 54.17	-1	1495607..1495750	+	47	39996468	-	GSU1366	-	hypothetical protein
1359	 60.70	0	1495968..1496621	+	217	39996469	-	GSU1367	-	hypothetical protein
1360	 58.65	0	1496621..1497493	+	290	39996470	-	GSU1368	-	hypothetical protein
1361	 54.55	-1	1497512..1498039	+	175	39996471	-	GSU1369	-	hypothetical protein
1362	 64.01	0	1498229..1499281	-	350	39996472	-	GSU1370	-	aldo/keto reductase family oxidoreductase
1363	 70.22	+1	1499442..1500539	-	365	39996473	-	GSU1371	-	oxidoreductase, FAD/FMN-binding
1364	 69.22	+1	1500642..1501502	-	286	39996474	-	GSU1372	-	3-hydroxyisobutyrate dehydrogenase family protein
1365	 53.51	-1	1501493..1501606	+	37	39996475	-	GSU1373	-	hypothetical protein
1366	 63.90	0	1501915..1503540	-	541	39996476	hylB	GSU1374	-	methyl-accepting chemotaxis protein
1367	 72.15	+2	1504128..1504802	+	224	39996477	-	GSU1375	-	hypothetical protein
1368	 65.57	0	1504786..1505607	-	273	39996478	-	GSU1376	-	hypothetical protein
1369	 66.67	+1	1505701..1506483	-	260	39996479	-	GSU1377	-	3-hydroxybutyryl-CoA dehydratase
1370	 70.02	+1	1506745..1507758	+	337	39996480	-	GSU1378	-	beta-lactamase
1371	 59.49	0	1507920..1508351	+	143	39996481	fur	GSU1379	-	ferric uptake regulation protein Fur
1372	 64.36	0	1508595..1510586	+	663	39996482	feoB-1	GSU1380	-	ferrous iron transport protein B
1373	 57.92	0	1510583..1510765	+	60	39996483	-	GSU1381	-	hypothetical protein
1374	 63.57	0	1510799..1511443	+	214	39996484	-	GSU1382	-	iron-dependent repressor, putative
1375	 63.37	0	1511698..1512243	+	181	39996485	-	GSU1383	-	exonuclease
1376	 56.41	0	1512324..1514975	+	883	39996486	cas3	GSU1384	-	hypothetical protein
1377	 56.87	0	1514972..1516492	+	506	39996487	-	GSU1385	-	hypothetical protein
1378	 58.78	0	1516476..1516919	+	147	39996488	-	GSU1386	-	hypothetical protein
1379	 54.61	-1	1516947..1518041	+	364	39996489	-	GSU1387	-	CRISPR-associated Cse4 family protein
1380	 57.27	0	1518044..1518724	+	226	39996490	-	GSU1388	-	CRISPR-associated Cas5e family protein
1381	 53.04	-1	1518711..1519319	+	202	39996491	-	GSU1389	-	CRISPR-associated Cse3 family protein
1382	 60.51	0	1519490..1519960	+	156	39996492	-	GSU1390	-	DNA-binding protein
1383	 58.63	0	1519957..1520541	+	194	39996493	-	GSU1391	-	Fic family protein
1384	 63.41	0	1520569..1521489	+	306	39996494	-	GSU1392	-	CRISPR-associated Cas1 family protein
1385	 59.80	0	1521470..1521775	+	101	39996495	-	GSU1393	-	hypothetical protein
1386	 64.42	0	1530745..1534656	-	1303	39996496	-	GSU1394	-	spore coat protein-related protein
1387	 59.30	0	1534748..1535005	-	85	39996497	-	GSU1395	-	hypothetical protein
1388	 58.76	0	1535268..1535621	-	117	39996498	-	GSU1396	-	hypothetical protein
1389	 63.50	0	1535639..1537342	-	567	39996499	-	GSU1397	-	cytochrome c family protein, putative
1390	 56.70	0	1537339..1537920	-	193	39996500	-	GSU1398	-	SCO1/SenC family protein
1391	 59.53	0	1538072..1539136	-	354	39996501	corA-1	GSU1399	-	magnesium and cobalt transport protein CorA
1392	 63.87	0	1540372..1543839	+	1155	39996502	dnaE	GSU1401	-	DNA polymerase III, alpha subunit
1393	 64.97	0	1543895..1544836	+	313	39996503	accA	GSU1402	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
1394	 66.67	+1	1544951..1545694	+	247	39996504	rluB	GSU1403	-	ribosomal large subunit pseudouridine synthase B
1395	 60.96	0	1545736..1546698	-	320	39996505	-	GSU1404	-	radical SAM domain-containing protein
1396	 60.61	0	1546808..1547104	+	98	39996506	-	GSU1405	-	hypothetical protein
1397	 62.00	0	1547086..1547235	-	49	39996507	-	GSU1406	-	hypothetical protein
1398	 59.26	0	1547222..1547356	+	44	39996508	-	GSU1407	-	hypothetical protein
1399	 63.29	0	1547328..1548215	-	295	39996509	-	GSU1408	-	ParA family protein
1400	 59.85	0	1548282..1548677	-	131	39996510	-	GSU1409	-	NifU-like domain-containing protein
1401	 60.22	0	1548670..1549026	-	118	39996511	-	GSU1410	-	hypothetical protein
1402	 61.75	0	1549047..1550042	-	331	39996512	-	GSU1411	-	sodium/bile acid symporter family protein
1403	 60.10	0	1550065..1550475	-	136	39996513	-	GSU1412	-	hypothetical protein
1404	 62.88	0	1550474..1550605	+	43	39996514	-	GSU1413	-	hypothetical protein
1405	 58.46	0	1551250..1553784	+	844	39996515	-	GSU1414	-	sensory box histidine kinase/response regulator
1406	 56.57	0	1554011..1554406	+	131	39996516	-	GSU1415	-	response regulator
1407	 64.33	0	1554933..1555232	+	99	39996517	-	GSU1416	-	iron-sulfur cluster-binding protein
1408	 56.81	0	1555521..1555946	-	141	39996518	-	GSU1417	-	response regulator
1409	 59.83	0	1555933..1556283	-	116	39996519	-	GSU1418	-	hypothetical protein
1410	 61.07	0	1556494..1556922	+	142	39996520	-	GSU1419	-	Cro/CI family transcriptional regulator
1411	 61.99	0	1557042..1557725	+	227	39996521	tylA	GSU1420	-	hemolysin A
1412	 62.60	0	1557739..1558869	+	376	39996522	-	GSU1421	-	nuclease SbcCD, D subunit, putative
1413	 63.17	0	1558869..1561043	+	724	39996523	-	GSU1422	-	nuclease SbcCD, C subunit, putative
1414	 57.97	0	1561021..1561365	+	114	39996524	-	GSU1423	-	HIT family protein
1415	 57.45	0	1561390..1561953	+	187	39996525	-	GSU1424	-	hypothetical protein
1416	 60.15	0	1562603..1563385	+	260	39996526	lgt	GSU1425	-	prolipoprotein diacylglyceryl transferase
1417	 56.67	0	1563394..1563843	-	149	39996527	-	GSU1426	-	rsbW protein, putative
1418	 53.27	-1	1563855..1564190	-	111	39996528	-	GSU1427	-	anti-anti-sigma factor
1419	 58.87	0	1564814..1567546	-	910	39996529	-	GSU1429	-	hypothetical protein
1420	 50.78	-1	1567543..1567800	-	85	39996530	-	GSU1430	-	hypothetical protein
1421	 61.43	0	1567785..1569368	-	527	39996531	-	GSU1431	-	hypothetical protein
1422	 57.32	0	1569651..1571372	+	573	39996532	-	GSU1432	-	TPR domain-containing protein
1423	 62.15	0	1571369..1572985	+	538	39996533	-	GSU1433	-	peptide ABC transporter, periplasmic peptide-binding protein
1424	 61.06	0	1572987..1573967	+	326	39996534	-	GSU1434	-	peptide ABC transporter, permease protein
1425	 63.02	0	1573971..1574819	+	282	39996535	-	GSU1435	-	peptide ABC transporter, permease protein
1426	 58.10	0	1574846..1575370	+	174	39996536	-	GSU1436	-	hypothetical protein
1427	 57.99	0	1575391..1576185	+	264	39996537	-	GSU1437	-	M48 family peptidase
1428	 60.07	0	1576188..1577066	+	292	39996538	-	GSU1438	-	hypothetical protein
1429	 62.64	0	1577012..1578055	-	347	39996539	-	GSU1439	-	hypothetical protein
1430	 62.99	0	1577267..1578244	+	325	39996540	-	GSU1440	-	hypothetical protein
1431	 58.60	0	1578257..1578541	+	94	39996541	-	GSU1441	-	ferredoxin family protein
1432	 54.70	-1	1578631..1579332	+	233	39996542	-	GSU1442	-	carbonic anhydrase family protein
1433	 55.17	-1	1579416..1581380	-	654	39996543	-	GSU1443	-	sensor histidine kinase/response regulator
1434	 59.73	0	1581389..1582282	-	297	39996544	-	GSU1444	-	hypothetical protein
1435	 55.72	0	1582943..1584724	+	593	39996545	-	GSU1445	-	TonB-dependent receptor, putative
1436	 60.44	0	1585073..1586404	+	443	39996546	-	GSU1446	-	radical SAM domain-containing protein
1437	 55.25	-1	1586465..1586683	-	72	39996547	-	GSU1447	-	hypothetical protein
1438	 62.17	0	1586708..1587574	-	288	39996548	-	GSU1448	-	phosphotransferase domain-containing protein
1439	 55.56	0	1587690..1587968	+	92	39996549	-	GSU1449	-	hypothetical protein
1440	 57.46	0	1587992..1588621	+	209	39996550	-	GSU1450	-	endonuclease III, putative
1441	 59.40	0	1588799..1589665	+	288	39996551	-	GSU1451	-	3-hydroxyisobutyrate dehydrogenase family protein
1442	 60.42	0	1589716..1591203	-	495	39996552	-	GSU1452	-	RNA methyltransferase
1443	 56.60	0	1591350..1592462	+	370	39996553	-	GSU1453	-	hypothetical protein
1444	 56.45	0	1592452..1593870	+	472	39996554	-	GSU1454	-	glycosyl transferase, group 2 family protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.