IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1273	 61.07	0	1396577..1397326	+	249	39996383	-	GSU1281	-	cobalt ABC transporter, ATP-binding protein
1274	 59.01	0	1397350..1398942	+	530	39996384	-	GSU1282	-	hypothetical protein
1275	 58.78	0	1399078..1399635	+	185	39996385	-	GSU1283	-	hypothetical protein
1276	 57.48	0	1399684..1400151	+	155	39996386	-	GSU1284	-	cytochrome c, putative
1277	 62.40	0	1400351..1402669	+	772	39996387	-	GSU1285	-	sensory box sensor histidine kinase/response regulator
1278	 57.83	0	1402706..1403101	+	131	39996388	cheY-2	GSU1286	-	chemotaxis protein CheY
1279	 61.89	0	1403232..1405115	+	627	39996389	-	GSU1287	-	methyl accepting chemotaxis protein, putative
1280	 58.79	0	1405120..1405500	-	126	39996390	-	GSU1288	-	hypothetical protein
1281	 59.02	0	1405494..1405859	+	121	39996391	cheY-3	GSU1289	-	chemotaxis protein CheY
1282	 62.16	0	1405859..1407964	+	701	39996392	cheA-1	GSU1290	-	chemotaxis protein CheA
1283	 54.57	-1	1408182..1408553	+	123	39996393	-	GSU1291	-	response regulator
1284	 58.79	0	1408577..1409731	+	384	39996394	-	GSU1292	-	sensory box histidine kinase
1285	 58.22	0	1409987..1410637	+	216	39996395	-	GSU1293	-	LuxR family DNA-binding response regulator
1286	 59.40	0	1410931..1413819	+	962	39996396	-	GSU1294	-	methyl-accepting chemotaxis protein
1287	 58.75	0	1414022..1414741	+	239	39996397	-	GSU1295	-	hypothetical protein
1288	 61.07	0	1414746..1416926	+	726	39996398	-	GSU1296	-	sensory box histidine kinase/response regulator
1289	 55.34	0	1416989..1418074	+	361	39996399	-	GSU1297	-	ISGsu2, transposase
1290	 57.35	0	1418548..1420254	+	568	39996400	-	GSU1298	-	methyl-accepting chemotaxis protein
1291	 61.01	0	1420264..1420758	+	164	39996401	cheW	GSU1299	-	purine-binding chemotaxis protein CheW
1292	 57.86	0	1421178..1422869	+	563	39996402	-	GSU1300	-	methyl-accepting chemotaxis protein
1293	 60.00	0	1422879..1423373	+	164	39996403	cheW-5	GSU1301	-	purine-binding chemotaxis protein CheW
1294	 61.32	0	1423689..1426196	+	835	39996404	-	GSU1302	-	sensor histidine kinase/response regulator
1295	 60.74	0	1426553..1428037	+	494	39996405	-	GSU1303	-	methyl-accepting chemotaxis protein
1296	 62.08	0	1428274..1429974	+	566	39996406	-	GSU1304	-	methyl-accepting chemotaxis protein
1297	 61.64	0	1430144..1431496	-	450	39996407	-	GSU1305	-	glutamate dehydrogenase
1298	 62.85	0	1431807..1433351	+	514	39996408	-	GSU1306	-	phosphotransferase domain-containing protein
1299	 57.85	0	1433423..1433944	+	173	39996409	ftn	GSU1307	-	ferritin
1300	 52.05	-1	1434028..1434246	+	72	39996410	-	GSU1308	-	hypothetical protein
1301	 62.11	0	1434527..1435756	+	409	39996411	-	GSU1309	-	hypothetical protein
1302	 68.76	+1	1435797..1436897	-	366	39996412	-	GSU1310	-	pyridine nucleotide-disulphide oxidoreductase family protein
1303	 65.97	0	1436894..1438483	-	529	39996413	pgi	GSU1311	-	glucose-6-phosphate isomerase
1304	 68.06	+1	1438500..1439507	-	335	39996414	-	GSU1312	-	radical SAM domain-containing protein
1305	 62.46	0	1439519..1439851	-	110	39996415	-	GSU1313	-	carboxymuconolactone decarboxylase
1306	 62.85	0	1439851..1440531	-	226	39996416	-	GSU1314	-	hypothetical protein
1307	 70.82	+1	1440620..1442137	-	505	39996417	merA-1	GSU1315	-	mercuric reductase
1308	 60.92	0	1442251..1443225	-	324	39996418	-	GSU1316	-	response regulator
1309	 58.31	0	1443412..1444380	+	322	39996419	ispB	GSU1317	-	octaprenyl-diphosphate synthase
1310	 57.09	0	1444534..1444794	+	86	39996420	-	GSU1318	-	hypothetical protein
1311	 64.31	0	1444965..1446068	+	367	39996421	-	GSU1319	-	sensor histidine kinase
1312	 64.06	0	1446088..1447470	+	460	39996422	-	GSU1320	-	sigma-54 dependent DNA-binding response regulator
1313	 61.34	0	1447467..1447973	+	168	39996423	-	GSU1321	-	thioredoxin family protein
1314	 59.53	0	1447999..1448727	+	242	39996424	ccdA	GSU1322	-	cytochrome c biogenesis protein CcdA
1315	 64.41	0	1448729..1449172	+	147	39996425	-	GSU1323	-	hypothetical protein
1316	 65.12	0	1449605..1449928	-	107	39996426	-	GSU1324	-	RNA-binding protein
1317	 58.43	0	1449947..1450213	-	88	39996427	-	GSU1325	-	hypothetical protein
1318	 68.25	+1	1450443..1452587	+	714	39996428	recG	GSU1326	-	ATP-dependent DNA helicase RecG
1319	 70.53	+1	1452599..1453555	+	318	39996429	-	GSU1327	-	homocysteine S-methyltransferase domain-containing protein
1320	 61.59	0	1453592..1453906	+	104	39996430	-	GSU1328	-	hypothetical protein
1321	 71.96	+2	1453943..1454887	+	314	39996431	-	GSU1329	-	tRNA synthetase class I domain-containing protein
1322	 65.52	0	1454915..1456396	+	493	39996432	-	GSU1330	-	metal ion efflux outer membrane protein family protein, putative
1323	 65.34	0	1456420..1457775	+	451	39996433	-	GSU1331	-	RND family efflux transporter MFP subunit
1324	 63.67	0	1457786..1460923	+	1045	39996434	-	GSU1332	-	CzcA family heavy metal efflux protein
1325	 58.02	0	1460959..1461432	+	157	39996435	-	GSU1333	-	hypothetical protein
1326	 66.74	+1	1461505..1462944	-	479	39996436	-	GSU1334	-	cytochrome c family protein
1327	 65.74	0	1462919..1463026	+	35	39996437	-	GSU1335	-	hypothetical protein
1328	 60.70	0	1463178..1463915	-	245	39996438	-	GSU1336	-	TerC family membrane protein
1329	 62.63	0	1463922..1465109	+	395	39996439	-	GSU1337	-	hypothetical protein
1330	 67.16	+1	1465350..1465754	+	134	39996440	-	GSU1338	-	heavy metal-binding domain-containing protein
1331	 65.41	0	1465871..1466347	+	158	39996441	-	GSU1339	-	hypothetical protein
1332	 65.12	0	1466389..1467549	+	386	39996442	-	GSU1340	-	ABC transporter, permease protein
1333	 65.96	0	1467582..1468286	+	234	39996443	-	GSU1341	-	ABC transporter, ATP-binding protein
1334	 63.37	0	1468634..1469542	-	302	39996444	-	GSU1342	-	LysR family transcriptional regulator
1335	 61.93	0	1469681..1470334	+	217	39996445	-	GSU1343	-	isochorismatase family protein
1336	 66.67	+1	1470445..1472256	+	603	39996446	-	GSU1344	-	hypothetical protein
1337	 63.42	0	1472572..1473033	+	153	39996447	-	GSU1345	-	Rrf2 family protein
1338	 65.78	0	1473101..1474114	+	337	39996448	cysP	GSU1346	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1339	 67.33	+1	1474119..1475021	+	300	39996449	cysT	GSU1347	-	sulfate ABC transporter, permease protein
1340	 67.39	+1	1475038..1475868	+	276	39996450	cysW	GSU1348	-	sulfate ABC transporter, permease protein
1341	 69.28	+1	1475903..1476934	+	343	39996451	cysA	GSU1349	-	sulfate ABC transporter, ATP-binding protein
1342	 67.17	+1	1476972..1477766	+	264	39996452	-	GSU1350	-	thiF family protein
1343	 66.25	+1	1477837..1478805	+	322	39996453	-	GSU1351	-	iron-sulfur cluster-binding protein
1344	 61.78	0	1478792..1479016	+	74	39996454	-	GSU1352	-	hypothetical protein
1345	 61.23	0	1479360..1479635	+	91	39996455	-	GSU1353	-	prevent-host-death family protein
1346	 59.94	0	1479640..1479951	+	103	39996456	-	GSU1354	-	plasmid stabilization system protein family protein
1347	 56.20	0	1480115..1480477	+	120	39996457	-	GSU1355	-	ISGsu7, transposase OrfA
1348	 56.79	0	1480474..1481364	+	296	39996458	-	GSU1356	-	ISGsu7, transposase OrfB
1349	 45.66	-2	1481427..1481783	+	118	39996459	-	GSU1357	-	hypothetical protein
1350	 58.22	0	1481813..1484215	+	800	39996460	-	GSU1358	-	hypothetical protein
1351	 62.70	0	1484238..1487363	+	1041	39996461	-	GSU1359	-	helicase, putative
1352	 44.56	-2	1487423..1489186	+	587	39996462	-	GSU1360	-	hypothetical protein
1353	 46.34	-2	1489176..1490597	+	473	39996463	-	GSU1361	-	piwi domain-containing protein
1354	 39.17	-2	1490654..1491835	+	393	39996464	-	GSU1362	-	hypothetical protein
1355	 38.15	-2	1491977..1493119	+	380	39996465	-	GSU1363	-	RNA-directed DNA polymerase
1356	 65.65	0	1493171..1494151	+	326	39996466	-	GSU1364	-	HNH endonuclease family protein
1357	 51.10	-1	1494206..1495252	+	348	39996467	-	GSU1365	-	Mrr restriction system protein, putative
1358	 54.17	-1	1495607..1495750	+	47	39996468	-	GSU1366	-	hypothetical protein
1359	 60.70	0	1495968..1496621	+	217	39996469	-	GSU1367	-	hypothetical protein
1360	 58.65	0	1496621..1497493	+	290	39996470	-	GSU1368	-	hypothetical protein
1361	 54.55	-1	1497512..1498039	+	175	39996471	-	GSU1369	-	hypothetical protein
1362	 64.01	0	1498229..1499281	-	350	39996472	-	GSU1370	-	aldo/keto reductase family oxidoreductase
1363	 70.22	+1	1499442..1500539	-	365	39996473	-	GSU1371	-	oxidoreductase, FAD/FMN-binding
1364	 69.22	+1	1500642..1501502	-	286	39996474	-	GSU1372	-	3-hydroxyisobutyrate dehydrogenase family protein
1365	 53.51	-1	1501493..1501606	+	37	39996475	-	GSU1373	-	hypothetical protein
1366	 63.90	0	1501915..1503540	-	541	39996476	hylB	GSU1374	-	methyl-accepting chemotaxis protein
1367	 72.15	+2	1504128..1504802	+	224	39996477	-	GSU1375	-	hypothetical protein
1368	 65.57	0	1504786..1505607	-	273	39996478	-	GSU1376	-	hypothetical protein
1369	 66.67	+1	1505701..1506483	-	260	39996479	-	GSU1377	-	3-hydroxybutyryl-CoA dehydratase
1370	 70.02	+1	1506745..1507758	+	337	39996480	-	GSU1378	-	beta-lactamase
1371	 59.49	0	1507920..1508351	+	143	39996481	fur	GSU1379	-	ferric uptake regulation protein Fur
1372	 64.36	0	1508595..1510586	+	663	39996482	feoB-1	GSU1380	-	ferrous iron transport protein B
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.