IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
81	 63.06	0	91907..93322	+	471	39995191	degQ	GSU0080	-	protease degQ
82	 61.36	0	93366..93629	+	87	39995192	-	GSU0081	-	hypothetical protein
83	 65.43	0	93714..94682	+	322	39995193	rluD	GSU0082	-	ribosomal large subunit pseudouridine synthase D
84	 64.92	0	94685..95485	+	266	39995194	-	GSU0083	-	hypothetical protein
85	 67.43	+1	95499..96674	+	391	39995195	-	GSU0084	-	hypothetical protein
86	 64.06	0	96773..97615	-	280	39995196	-	GSU0085	-	heterodisulfide reductase, cytochrome reductase subunit
87	 57.35	0	97614..98021	+	135	39995197	-	GSU0086	-	hypothetical protein
88	 63.38	0	98008..99012	-	334	39995198	-	GSU0087	-	heterodisulfide reductase, iron-sulfur binding subunit, putative
89	 65.70	0	99056..99985	-	309	39995199	-	GSU0088	-	heterodisulfide reductase subunit
90	 62.28	0	100019..100519	-	166	39995200	-	GSU0089	-	heterodisulfide reductase subunit
91	 64.26	0	100519..102516	-	665	39995201	-	GSU0090	-	heterodisulfide reductase subunit
92	 64.09	0	102517..103407	-	296	39995202	-	GSU0091	-	heterodisulfide reductase subunit
93	 59.74	0	103404..103952	-	182	39995203	-	GSU0092	-	heterodisulfide reductase subunit
94	 61.92	0	104580..106412	+	610	39995204	-	GSU0093	-	ABC transporter, ATP-binding/permease protein
95	 63.51	0	106783..108522	+	579	39995205	dnaX	GSU0094	-	DNA polymerase III, gamma and tau subunits
96	 56.19	0	108593..108907	+	104	39995206	-	GSU0095	-	hypothetical protein
97	 62.63	0	109096..109689	+	197	39995207	recR	GSU0096	-	recombination protein RecR
98	 62.90	0	109754..113341	+	1195	39995208	-	GSU0097	-	pyruvate ferredoxin/flavodoxin oxidoreductase
99	 57.93	0	113608..114099	+	163	39995209	-	GSU0098	-	MglB protein
100	 56.29	0	114118..114705	+	195	39995210	-	GSU0099	-	MglA protein
101	 53.33	-1	114689..114793	-	34	39995211	-	GSU0100	-	hypothetical protein
102	 62.45	0	114856..116634	+	592	39995212	-	GSU0101	-	ABC transporter, ATP-binding/permease protein
103	 63.79	0	116665..118575	+	636	39995213	selB	GSU0102	-	selenocysteine-specific translation elongation factor
104	 58.24	0	118723..120834	+	703	39995214	-	GSU0103	-	sensory box histidine kinase
105	 61.03	0	120852..121241	+	129	39995215	-	GSU0104	-	response regulator, putative
106	 56.09	0	121302..121613	-	103	39995216	-	GSU0105	-	cytochrome c family protein, putative
107	 59.69	0	121771..122544	+	257	39995217	-	GSU0106	-	soj protein
108	 60.86	0	122567..123376	+	269	39995218	-	GSU0107	-	ParB-like nuclease domain-containing protein
109	 56.10	0	123555..123980	+	141	39995219	-	GSU0108	-	ATP synthase F0, B' subunit, putative
110	 56.16	0	124109..124603	+	164	39995220	atpF	GSU0109	-	ATP synthase F0, B subunit
111	 58.38	0	124600..125142	+	180	39995221	atpH	GSU0110	-	F0F1 ATP synthase subunit delta
112	 59.85	0	125151..126662	+	503	39995222	atpA	GSU0111	-	F0F1 ATP synthase subunit alpha
113	 55.44	0	126684..127547	+	287	39995223	atpG	GSU0112	-	F0F1 ATP synthase subunit gamma
114	 60.86	0	127605..129017	+	470	39995224	atpD	GSU0113	-	F0F1 ATP synthase subunit beta
115	 53.96	-1	129078..129494	+	138	39995225	atpC	GSU0114	-	F0F1 ATP synthase subunit epsilon
116	 60.26	0	129587..130600	+	337	39995226	pdxA	GSU0115	-	pyridoxal phosphate biosynthetic protein PdxA
117	 58.81	0	130603..131556	+	317	39995227	-	GSU0116	-	transglycosylase
118	 57.47	0	131671..132975	-	434	39995228	-	GSU0117	-	aminotransferase
119	 65.02	0	133254..133859	-	201	39995229	-	GSU0118	-	hypothetical protein
120	 60.77	0	133877..134215	-	112	39995230	-	GSU0119	-	glyoxalase family protein
121	 66.67	+1	134385..134819	-	144	39995231	-	GSU0120	-	hydrogenase maturation protease
122	 61.88	0	134859..135527	-	222	39995232	-	GSU0121	-	nickel-iron hydrogenase, b-type cytochrome subunit
123	 63.30	0	135537..137231	-	564	39995233	-	GSU0122	-	nickel-dependent hydrogenase, large subunit
124	 66.21	+1	137241..138326	-	361	39995234	-	GSU0123	-	nickel-dependent hydrogenase, small subunit
125	 69.46	+1	138515..139231	-	238	39995235	-	GSU0124	-	competence protein F, putative
126	 63.15	0	139235..139888	-	217	39995236	-	GSU0125	-	hypothetical protein
127	 62.17	0	139913..140890	-	325	39995237	-	GSU0126	-	iron-sulfur cluster-binding protein
128	 62.07	0	141097..141945	-	282	39995238	-	GSU0127	-	hypothetical protein
129	 67.38	+1	141993..144248	+	751	39995239	priA	GSU0128	-	primosomal protein n`
130	 57.92	0	144291..144839	+	182	39995240	def-1	GSU0129	-	polypeptide deformylase
131	 64.47	0	144850..145803	+	317	39995241	fmt	GSU0130	-	methionyl-tRNA formyltransferase
132	 59.92	0	145806..146561	+	251	39995242	-	GSU0131	-	hypothetical protein
133	 56.02	0	146719..147225	-	168	39995243	-	GSU0132	-	hypothetical protein
134	 62.30	0	147502..148668	+	388	39995244	-	GSU0133	-	hypothetical protein
135	 64.21	0	148677..149777	-	366	39995245	-	GSU0134	-	ribonuclease Z
136	 62.78	0	149856..150833	-	325	39995246	hemB	GSU0135	-	delta-aminolevulinic acid dehydratase
137	 62.10	0	151068..151505	+	145	39995247	-	GSU0136	-	hypothetical protein
138	 58.66	0	151656..152354	-	232	39995248	-	GSU0137	-	hypothetical protein
139	 59.90	0	152504..154084	+	526	39995249	prfC	GSU0138	-	peptide chain release factor 3
140	 62.11	0	154312..154926	+	204	39995250	-	GSU0139	-	hypothetical protein
141	 65.60	0	155133..155882	+	249	39995251	-	GSU0140	-	hypothetical protein
142	 65.55	0	155890..157056	+	388	39995252	-	GSU0141	-	hypothetical protein
143	 65.07	0	157068..157505	+	145	39995253	pgpA	GSU0142	-	phosphatidylglycerophosphatase A
144	 68.92	+1	157502..158743	+	413	39995254	-	GSU0143	-	competence/damage-inducible protein CinA
145	 62.02	0	158787..160916	+	709	39995255	-	GSU0144	-	sensory box histidine kinase
146	 62.93	0	161049..162065	+	338	39995256	recA	GSU0145	-	recombinase A
147	 63.82	0	162069..163229	+	386	39995257	pilT-1	GSU0146	-	twitching motility protein PilT
148	 68.54	+1	163258..163737	+	159	39995258	recX	GSU0147	-	regulatory protein RecX
149	 64.88	0	163809..166436	+	875	39995259	alaS	GSU0148	-	alanyl-tRNA synthetase
150	 60.93	0	166459..167574	+	371	39995260	-	GSU0149	-	sensor histidine kinase/response regulator
151	 63.48	0	167708..168586	+	292	39995261	argB	GSU0150	-	acetylglutamate kinase
152	 64.33	0	168667..169866	+	399	39995262	argD	GSU0151	-	acetylornithine aminotransferase
153	 64.04	0	169863..170774	+	303	39995263	argF	GSU0152	-	ornithine carbamoyltransferase
154	 62.82	0	170807..172027	+	406	39995264	argG	GSU0153	-	argininosuccinate synthase
155	 60.59	0	172194..172637	+	147	39995265	-	GSU0154	-	mutT/nudix family protein
156	 63.57	0	172648..173811	+	387	39995266	-	GSU0155	-	hypothetical protein
157	 63.62	0	173833..175209	+	458	39995267	argH	GSU0156	-	argininosuccinate lyase
158	 68.86	+1	175248..176021	+	257	39995268	-	GSU0157	-	fibronectin type III domain-containing protein
159	 63.72	0	176159..177412	+	417	39995269	lysA	GSU0158	-	diaminopimelate decarboxylase
160	 63.69	0	177446..178318	+	290	39995270	dapA	GSU0159	-	dihydrodipicolinate synthase
161	 65.42	0	178340..179140	+	266	39995271	dapB	GSU0160	-	dihydrodipicolinate reductase
162	 45.74	-2	179230..179358	+	42	39995272	-	GSU0161	-	hypothetical protein
163	 62.77	0	179342..180574	+	410	39995273	-	GSU0162	-	L,L-diaminopimelate aminotransferase
164	 52.08	-1	180697..180984	+	95	39995274	-	GSU0163	-	hypothetical protein
165	 56.20	0	180981..181343	+	120	39995275	-	GSU0164	-	hypothetical protein
166	 39.23	-2	181411..182766	+	451	39995276	-	GSU0165	-	hypothetical protein
167	 39.39	-2	182895..182993	-	32	39995277	-	GSU0166	-	hypothetical protein
168	 59.15	0	183332..183637	+	101	39995278	-	GSU0167	-	hypothetical protein
169	 58.44	0	183883..185049	+	388	39995279	-	GSU0168	-	Fic family protein
170	 62.70	0	185171..186808	+	545	39995280	-	GSU0169	-	ABC transporter, ATP-binding protein
171	 64.60	0	186838..187320	+	160	39995281	-	GSU0170	-	hypothetical protein
172	 69.08	+1	187341..187796	+	151	39995282	-	GSU0171	-	YaiI/YqxD family protein
173	 58.47	0	188001..188378	+	125	39995283	-	GSU0172	-	hypothetical protein
174	 68.38	+1	188832..189356	+	174	39995284	-	GSU0173	-	hypothetical protein
175	 63.98	0	189553..191115	-	520	39995285	-	GSU0174	-	acetyl-CoA hydrolase/transferase family protein
176	 66.83	+1	191349..191960	+	203	39995286	-	GSU0175	-	TetR family transcriptional regulator
177	 62.40	0	192082..192456	+	124	39995287	-	GSU0176	-	hypothetical protein
178	 62.26	0	192466..192987	+	173	39995288	-	GSU0177	-	acetyltransferase
179	 58.84	0	193093..193437	-	114	39995289	-	GSU0178	-	hypothetical protein
180	 61.32	0	193592..194227	+	211	39995290	-	GSU0179	-	NADPH-dependent FMN reductase domain-containing protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.