IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1196	 62.18	0	1308090..1310183	+	697	39996306	-	GSU1204	-	sodium/hydrogen exchanger family protein
1197	 58.65	0	1310180..1310653	+	157	39996307	-	GSU1205	-	flavodoxin family protein
1198	 66.33	+1	1310650..1311246	+	198	39996308	-	GSU1206	-	HDIG domain-containing protein
1199	 56.94	0	1311248..1311535	+	95	39996309	-	GSU1207	-	HesB/YadR/YfhF family protein, selenocysteine-containing
1200	 66.82	+1	1311551..1312195	+	214	39996310	-	GSU1208	-	hypothetical protein
1201	 63.66	0	1312215..1312946	-	243	39996311	-	GSU1209	-	hypothetical protein
1202	 63.00	0	1312970..1313977	+	335	39996312	-	GSU1210	-	metallo-beta-lactamase family protein
1203	 64.42	0	1314048..1314314	+	88	39996313	-	GSU1211	-	hypothetical protein
1204	 59.41	0	1314408..1315385	-	325	39996314	-	GSU1212	-	hypothetical protein
1205	 62.87	0	1315449..1316765	-	438	39996315	-	GSU1213	-	hypothetical protein
1206	 63.97	0	1317073..1318074	+	333	39996316	-	GSU1214	-	tetracenomycin polyketide synthesis 8-o-methyltransferase, putative
1207	 69.80	+1	1318089..1319810	+	573	39996317	cydD	GSU1215	-	transport ATP-binding protein CydD
1208	 67.70	+1	1319807..1321453	+	548	39996318	cydC	GSU1216	-	transport ATP-binding protein CydC
1209	 57.74	0	1321513..1321680	+	55	39996319	-	GSU1217	-	hypothetical protein
1210	 63.44	0	1321804..1321989	+	61	39996320	-	GSU1218	-	hypothetical protein
1211	 61.74	0	1322000..1323400	+	466	39996321	gltX	GSU1219	-	glutamyl-tRNA synthetase
1212	 58.87	0	1323513..1324346	-	277	39996322	-	GSU1220	-	response regulator
1213	 60.52	0	1324618..1325838	-	406	39996323	-	GSU1221	-	ammonium transporter, putative
1214	 61.49	0	1326135..1327292	+	385	39996324	-	GSU1222	-	histone deacetylase/AcuC/AphA family protein
1215	 62.62	0	1327300..1328139	+	279	39996325	-	GSU1223	-	hypothetical protein
1216	 62.81	0	1328136..1329095	+	319	39996326	-	GSU1224	-	TPR domain-containing protein
1217	 54.36	-1	1329216..1329743	-	175	39996327	-	GSU1226	-	hypothetical protein
1218	 53.43	-1	1329261..1329683	+	140	39996328	-	GSU1225	-	hypothetical protein
1219	 57.88	0	1329835..1330653	+	272	39996329	-	GSU1227	-	ABC transporter, ATP-binding protein
1220	 60.55	0	1330696..1331709	+	337	39996330	-	GSU1228	-	cytochrome c family protein
1221	 59.24	0	1331753..1333852	+	699	39996331	-	GSU1229	-	putative lipoprotein
1222	 61.89	0	1333874..1334836	+	320	39996332	-	GSU1230	-	hypothetical protein
1223	 55.56	0	1334870..1335265	+	131	39996333	-	GSU1231	-	response regulator
1224	 59.29	0	1335282..1335674	+	130	39996334	-	GSU1232	-	hypothetical protein
1225	 60.49	0	1335685..1336170	-	161	39996335	-	GSU1233	-	phosphoesterase, putative
1226	 62.84	0	1336399..1337181	+	260	39996336	sppA-2	GSU1234	-	signal peptide peptidase SppA, 36K type
1227	 60.64	0	1337263..1338009	-	248	39996337	-	GSU1235	-	hypothetical protein
1228	 60.78	0	1338075..1339094	-	339	39996338	-	GSU1236	-	hypothetical protein
1229	 62.78	0	1339247..1340557	-	436	39996339	-	GSU1237	-	pyridine nucleotide-disulphide oxidoreductase family protein
1230	 62.67	0	1340554..1341003	-	149	39996340	-	GSU1238	-	iron-sulfur cluster-binding protein
1231	 63.46	0	1341008..1342537	-	509	39996341	-	GSU1239	-	glutamate synthase-related protein
1232	 59.76	0	1342846..1343844	-	332	39996342	-	GSU1240	-	hypothetical protein
1233	 52.45	-1	1343841..1344044	-	67	39996343	-	GSU1241	-	hypothetical protein
1234	 60.25	0	1344212..1345411	-	399	39996344	-	GSU1242	-	aspartate aminotransferase
1235	 59.80	0	1345453..1345947	-	164	39996345	coaD	GSU1243	-	pantetheine-phosphate adenylyltransferase
1236	 64.36	0	1345954..1346517	-	187	39996346	-	GSU1244	-	methyltransferase, putative
1237	 61.10	0	1346505..1347599	-	364	39996347	-	GSU1245	-	fructose-bisphosphate aldolase, class-II, putative
1238	 61.67	0	1347775..1348914	+	379	39996348	-	GSU1246	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1239	 64.20	0	1349165..1349731	+	188	39996349	-	GSU1247	-	hypothetical protein
1240	 54.73	-1	1349931..1350332	-	133	39996350	-	GSU1248	-	ISL3 family transposase truncation
1241	 59.37	0	1350455..1352029	+	524	39996351	-	GSU1249	-	sensory box histidine kinase
1242	 61.35	0	1352057..1353466	+	469	39996352	-	GSU1250	-	sigma-54 dependent DNA-binding response regulator
1243	 65.23	0	1353842..1360090	+	2082	39996353	-	GSU1251	-	BNR repeat-containing protein
1244	 64.41	0	1360117..1365075	+	1652	39996354	-	GSU1252	-	hypothetical protein
1245	 63.92	0	1365114..1367153	+	679	39996355	-	GSU1253	-	hypothetical protein
1246	 67.41	+1	1367157..1368500	+	447	39996356	-	GSU1254	-	hypothetical protein
1247	 58.46	0	1368521..1369105	+	194	39996357	-	GSU1255	-	hypothetical protein
1248	 59.13	0	1369123..1369746	+	207	39996358	-	GSU1256	-	hypothetical protein
1249	 62.73	0	1369743..1371368	+	541	39996359	-	GSU1257	-	ABC transporter, periplasmic-substrate binding protein, putative
1250	 59.83	0	1371459..1371941	+	160	39996360	nosL	GSU1258	-	nosL protein
1251	 61.11	0	1372001..1372252	+	83	39996361	-	GSU1259	-	hypothetical protein
1252	 62.33	0	1372290..1373372	+	360	39996362	-	GSU1260	-	ABC transporter, permease protein
1253	 64.47	0	1373374..1374057	+	227	39996363	-	GSU1261	-	ABC transporter, ATP-binding protein
1254	 62.15	0	1374054..1375049	+	331	39996364	-	GSU1262	-	hypothetical protein
1255	 60.61	0	1375122..1375418	-	98	39996365	-	GSU1263	-	hypothetical protein
1256	 63.17	0	1375498..1375812	-	104	39996366	-	GSU1264	-	hypothetical protein
1257	 61.73	0	1375825..1377162	-	445	39996367	-	GSU1265	-	sensor histidine kinase/response regulator
1258	 60.23	0	1377368..1379170	+	600	39996368	lepA	GSU1266	-	GTP-binding protein LepA
1259	 56.05	0	1379195..1379863	+	222	39996369	lepB	GSU1267	-	signal peptidase I
1260	 57.64	0	1379856..1380863	-	335	39996370	-	GSU1268	-	LysR family transcriptional regulator
1261	 62.29	0	1381020..1384445	-	1141	39996371	-	GSU1269	-	hypothetical protein
1262	 62.92	0	1385037..1385570	+	177	39996372	pyrR	GSU1270	-	pyrimidine regulatory protein PyrR
1263	 63.46	0	1385636..1386571	+	311	39996373	pyrB	GSU1271	-	aspartate carbamoyltransferase catalytic subunit
1264	 64.16	0	1386623..1387900	+	425	39996374	pyrC	GSU1272	-	dihydroorotase, multifunctional complex type
1265	 62.58	0	1387991..1389115	+	374	39996375	carA	GSU1273	-	carbamoyl phosphate synthase small subunit
1266	 62.81	0	1389118..1390077	+	319	39996376	-	GSU1274	-	radical SAM domain-containing protein
1267	 56.06	0	1390079..1390408	+	109	39996377	-	GSU1275	-	hypothetical protein
1268	 61.61	0	1390449..1393694	+	1081	39996378	carB	GSU1276	-	carbamoyl-phosphate synthase, large subunit
1269	 58.91	0	1393780..1394256	+	158	39996379	greA	GSU1277	-	transcription elongation factor GreA
1270	 55.05	-1	1394329..1394526	+	65	39996380	-	GSU1278	-	hypothetical protein
1271	 64.05	0	1394709..1395740	+	343	39996381	-	GSU1279	-	cobalamin biosynthesis protein CbiM, putative
1272	 63.71	0	1395768..1396580	+	270	39996382	-	GSU1280	-	cobalt ABC transporter, permease protein
1273	 61.07	0	1396577..1397326	+	249	39996383	-	GSU1281	-	cobalt ABC transporter, ATP-binding protein
1274	 59.01	0	1397350..1398942	+	530	39996384	-	GSU1282	-	hypothetical protein
1275	 58.78	0	1399078..1399635	+	185	39996385	-	GSU1283	-	hypothetical protein
1276	 57.48	0	1399684..1400151	+	155	39996386	-	GSU1284	-	cytochrome c, putative
1277	 62.40	0	1400351..1402669	+	772	39996387	-	GSU1285	-	sensory box sensor histidine kinase/response regulator
1278	 57.83	0	1402706..1403101	+	131	39996388	cheY-2	GSU1286	-	chemotaxis protein CheY
1279	 61.89	0	1403232..1405115	+	627	39996389	-	GSU1287	-	methyl accepting chemotaxis protein, putative
1280	 58.79	0	1405120..1405500	-	126	39996390	-	GSU1288	-	hypothetical protein
1281	 59.02	0	1405494..1405859	+	121	39996391	cheY-3	GSU1289	-	chemotaxis protein CheY
1282	 62.16	0	1405859..1407964	+	701	39996392	cheA-1	GSU1290	-	chemotaxis protein CheA
1283	 54.57	-1	1408182..1408553	+	123	39996393	-	GSU1291	-	response regulator
1284	 58.79	0	1408577..1409731	+	384	39996394	-	GSU1292	-	sensory box histidine kinase
1285	 58.22	0	1409987..1410637	+	216	39996395	-	GSU1293	-	LuxR family DNA-binding response regulator
1286	 59.40	0	1410931..1413819	+	962	39996396	-	GSU1294	-	methyl-accepting chemotaxis protein
1287	 58.75	0	1414022..1414741	+	239	39996397	-	GSU1295	-	hypothetical protein
1288	 61.07	0	1414746..1416926	+	726	39996398	-	GSU1296	-	sensory box histidine kinase/response regulator
1289	 55.34	0	1416989..1418074	+	361	39996399	-	GSU1297	-	ISGsu2, transposase
1290	 57.35	0	1418548..1420254	+	568	39996400	-	GSU1298	-	methyl-accepting chemotaxis protein
1291	 61.01	0	1420264..1420758	+	164	39996401	cheW	GSU1299	-	purine-binding chemotaxis protein CheW
1292	 57.86	0	1421178..1422869	+	563	39996402	-	GSU1300	-	methyl-accepting chemotaxis protein
1293	 60.00	0	1422879..1423373	+	164	39996403	cheW-5	GSU1301	-	purine-binding chemotaxis protein CheW
1294	 61.32	0	1423689..1426196	+	835	39996404	-	GSU1302	-	sensor histidine kinase/response regulator
1295	 60.74	0	1426553..1428037	+	494	39996405	-	GSU1303	-	methyl-accepting chemotaxis protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.