IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1117	 58.72	0	1209557..1210462	-	301	39996227	-	GSU1125	-	hypothetical protein
1118	 66.53	+1	1210532..1211239	+	235	39996228	-	GSU1126	-	phage SPO1 DNA polymerase-related protein
1119	 64.30	0	1211246..1211626	+	126	39996229	-	GSU1127	-	hypothetical protein
1120	 61.94	0	1211690..1212133	+	147	39996230	-	GSU1128	-	hypothetical protein
1121	 59.40	0	1212287..1213648	-	453	39996231	-	GSU1129	-	sigma-54 dependent DNA-binding response regulator
1122	 62.73	0	1213798..1217325	+	1175	39996232	-	GSU1130	-	chromosome segregation SMC protein, putative
1123	 60.00	0	1217345..1217704	+	119	39996233	-	GSU1131	-	hypothetical protein
1124	 60.97	0	1217706..1218758	+	350	39996234	ftsY	GSU1132	-	cell division protein FtsY
1125	 55.93	0	1218820..1218996	+	58	39996235	-	GSU1133	-	hypothetical protein
1126	 59.03	0	1218996..1219283	+	95	39996236	-	GSU1134	-	hypothetical protein
1127	 45.71	-2	1219381..1219485	+	34	39996237	-	GSU1135	-	hypothetical protein
1128	 60.11	0	1219665..1220228	+	187	39996238	-	GSU1136	-	5-formyltetrahydrofolate cyclo-ligase family protein
1129	 56.24	0	1220256..1221818	+	520	39996239	-	GSU1137	-	KH domain-containing protein
1130	 55.64	0	1221808..1222596	+	262	39996240	-	GSU1138	-	Ser/Thr protein phosphatase family protein
1131	 55.69	0	1222614..1223825	+	403	39996241	tyrS	GSU1139	-	tyrosyl-tRNA synthetase
1132	 55.36	0	1229730..1231913	+	727	39996242	-	GSU1140	-	methyl-accepting chemotaxis protein
1133	 59.50	0	1231999..1233588	+	529	39996243	-	GSU1141	-	methyl-accepting chemotaxis protein
1134	 55.76	0	1233727..1234221	+	164	39996244	cheW-3	GSU1142	-	purine-binding chemotaxis protein CheW
1135	 57.45	0	1234240..1235118	+	292	39996245	cheR-2	GSU1143	-	chemotaxis protein methyltransferase CheR
1136	 59.60	0	1235202..1235597	+	131	39996246	-	GSU1144	-	chemotaxis protein CheD, putative
1137	 59.34	0	1235626..1236690	+	354	39996247	cheB-2	GSU1145	-	protein-glutamate methylesterase
1138	 58.76	0	1236842..1237903	+	353	39996248	-	GSU1146	-	hypothetical protein
1139	 60.98	0	1237961..1238998	+	345	39996249	-	GSU1147	-	hypothetical protein
1140	 58.84	0	1239159..1240973	+	604	39996250	-	GSU1148	-	sensor histidine kinase
1141	 57.77	0	1241046..1242281	+	411	39996251	-	GSU1149	-	EAL domain-containing protein
1142	 60.22	0	1242391..1243818	+	475	39996252	-	GSU1150	-	oxidative cyclase-related protein
1143	 62.05	0	1243829..1244695	+	288	39996253	-	GSU1151	-	hypothetical protein
1144	 57.74	0	1244688..1245068	+	126	39996254	-	GSU1152	-	hypothetical protein
1145	 61.12	0	1245146..1246822	-	558	39996255	-	GSU1153	-	OMP85 family outer membrane protein
1146	 63.13	0	1246831..1260972	-	4713	39996256	-	GSU1154	-	surface protein
1147	 54.84	-1	1261184..1261555	-	123	39996257	-	GSU1155	-	glutaredoxin family protein
1148	 63.56	0	1261648..1263033	+	461	39996258	asnC	GSU1156	-	asparaginyl-tRNA synthetase
1149	 65.25	0	1263068..1263349	+	93	39996259	-	GSU1157	-	hypothetical protein
1150	 56.99	0	1263496..1264074	+	192	39996260	sodA	GSU1158	-	superoxide dismutase
1151	 64.48	0	1264180..1264683	+	167	39996261	-	GSU1159	-	PfpI family intracellular peptidase
1152	 57.73	0	1264695..1265108	+	137	39996262	-	GSU1160	-	hypothetical protein
1153	 66.83	+1	1265187..1266401	+	404	39996263	-	GSU1161	-	RND family efflux transporter MFP subunit
1154	 64.51	0	1266402..1267097	+	231	39996264	-	GSU1162	-	ABC transporter, ATP-binding protein
1155	 61.74	0	1267101..1268258	+	385	39996265	-	GSU1163	-	ABC transporter, permease protein
1156	 63.32	0	1268258..1269421	+	387	39996266	-	GSU1164	-	ABC transporter, permease protein
1157	 62.46	0	1269431..1271140	-	569	39996267	ptsP	GSU1165	-	phosphoenolpyruvate-protein phosphotransferase PtsP
1158	 63.17	0	1271943..1272743	+	266	39996268	-	GSU1166	-	TPR domain-containing protein
1159	 56.41	0	1272827..1273177	+	116	39996269	-	GSU1167	-	hypothetical protein
1160	 64.37	0	1273277..1273930	+	217	39996270	-	GSU1168	-	hypothetical protein
1161	 61.97	0	1273947..1274585	-	212	39996271	-	GSU1169	-	hypothetical protein
1162	 64.05	0	1274698..1274850	-	50	39996272	-	GSU1170	-	hypothetical protein
1163	 65.81	0	1274908..1276890	+	660	39996273	-	GSU1171	-	hypothetical protein
1164	 62.01	0	1276965..1278530	+	521	39996274	mviN	GSU1172	-	virulence factor mviN protein
1165	 65.21	0	1278520..1279068	+	182	39996275	-	GSU1173	-	methylated-DNA--protein-cysteine methyltransferase, putative
1166	 61.24	0	1279352..1280143	-	263	39996276	mazG	GSU1174	-	nucleoside triphosphate pyrophosphohydrolase
1167	 59.62	0	1280212..1281318	-	368	39996277	tgt-1	GSU1175	-	queuine tRNA-ribosyltransferase
1168	 55.20	-1	1281852..1282514	+	220	39996278	-	GSU1176	-	fumarate reductase, cytochrome b subunit, putative
1169	 59.35	0	1282525..1284438	+	637	39996279	sdhA	GSU1177	-	succinate dehydrogenase flavoprotein subunit
1170	 58.66	0	1284438..1285199	+	253	39996280	frdB	GSU1178	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1171	 60.02	0	1285504..1286421	+	305	39996281	-	GSU1179	-	hypothetical protein
1172	 60.09	0	1286588..1288441	+	617	39996282	ftsH-1	GSU1180	-	cell division protein FtsH
1173	 51.57	-1	1288446..1288763	-	105	39996283	-	GSU1181	-	hypothetical protein
1174	 60.26	0	1288728..1290209	+	493	39996284	malQ	GSU1182	-	4-alpha-glucanotransferase
1175	 60.61	0	1290337..1291623	+	428	39996285	-	GSU1183	-	O-acetyl-L-homoserine sulfhydrylase
1176	 61.37	0	1291708..1292292	+	194	39996286	-	GSU1184	-	hypothetical protein
1177	 59.71	0	1292703..1293191	-	162	39996287	-	GSU1185	-	hypothetical protein
1178	 63.74	0	1293361..1293531	-	56	39996288	-	GSU1186	-	hypothetical protein
1179	 67.57	+1	1293780..1293890	+	36	39996289	-	GSU1187	-	hypothetical protein
1180	 61.90	0	1294073..1294618	+	181	39996290	-	GSU1188	-	rhomboid family protein
1181	 63.51	0	1294633..1295583	-	316	39996291	-	GSU1189	-	M48 family peptidase
1182	 64.54	0	1295588..1296622	-	344	39996292	-	GSU1190	-	tRNA 2-selenouridine synthase
1183	 58.82	0	1296679..1296780	+	33	39996293	-	GSU1191	-	hypothetical protein
1184	 57.33	0	1296898..1297272	+	124	39996294	-	GSU1192	-	hypothetical protein
1185	 60.76	0	1297385..1298671	+	428	39996295	-	GSU1193	-	ketose-bisphosphate aldolase family protein
1186	 63.93	0	1298743..1299363	+	206	39996296	-	GSU1194	-	amino acid transporter LysE
1187	 65.28	0	1299515..1300162	+	215	39996297	-	GSU1195	-	HD domain-containing protein
1188	 60.16	0	1300159..1300542	-	127	39996298	-	GSU1196	-	hypothetical protein
1189	 62.63	0	1300548..1301042	-	164	39996299	-	GSU1197	-	RNA methyltransferase
1190	 61.33	0	1301218..1302846	+	542	39996300	serA	GSU1198	-	D-3-phosphoglycerate dehydrogenase
1191	 63.48	0	1302927..1303490	+	187	39996301	-	GSU1199	-	nuclease, putative
1192	 63.44	0	1303580..1304788	+	402	39996302	rpsA	GSU1200	-	30S ribosomal protein S1
1193	 62.76	0	1304794..1305279	+	161	39996303	greB	GSU1201	-	transcription elongation factor GreB
1194	 64.99	0	1305384..1306457	+	357	39996304	-	GSU1202	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, truncation
1195	 58.86	0	1306518..1307978	+	486	39996305	-	GSU1203	-	potassium/proton antiporter
1196	 62.18	0	1308090..1310183	+	697	39996306	-	GSU1204	-	sodium/hydrogen exchanger family protein
1197	 58.65	0	1310180..1310653	+	157	39996307	-	GSU1205	-	flavodoxin family protein
1198	 66.33	+1	1310650..1311246	+	198	39996308	-	GSU1206	-	HDIG domain-containing protein
1199	 56.94	0	1311248..1311535	+	95	39996309	-	GSU1207	-	HesB/YadR/YfhF family protein, selenocysteine-containing
1200	 66.82	+1	1311551..1312195	+	214	39996310	-	GSU1208	-	hypothetical protein
1201	 63.66	0	1312215..1312946	-	243	39996311	-	GSU1209	-	hypothetical protein
1202	 63.00	0	1312970..1313977	+	335	39996312	-	GSU1210	-	metallo-beta-lactamase family protein
1203	 64.42	0	1314048..1314314	+	88	39996313	-	GSU1211	-	hypothetical protein
1204	 59.41	0	1314408..1315385	-	325	39996314	-	GSU1212	-	hypothetical protein
1205	 62.87	0	1315449..1316765	-	438	39996315	-	GSU1213	-	hypothetical protein
1206	 63.97	0	1317073..1318074	+	333	39996316	-	GSU1214	-	tetracenomycin polyketide synthesis 8-o-methyltransferase, putative
1207	 69.80	+1	1318089..1319810	+	573	39996317	cydD	GSU1215	-	transport ATP-binding protein CydD
1208	 67.70	+1	1319807..1321453	+	548	39996318	cydC	GSU1216	-	transport ATP-binding protein CydC
1209	 57.74	0	1321513..1321680	+	55	39996319	-	GSU1217	-	hypothetical protein
1210	 63.44	0	1321804..1321989	+	61	39996320	-	GSU1218	-	hypothetical protein
1211	 61.74	0	1322000..1323400	+	466	39996321	gltX	GSU1219	-	glutamyl-tRNA synthetase
1212	 58.87	0	1323513..1324346	-	277	39996322	-	GSU1220	-	response regulator
1213	 60.52	0	1324618..1325838	-	406	39996323	-	GSU1221	-	ammonium transporter, putative
1214	 61.49	0	1326135..1327292	+	385	39996324	-	GSU1222	-	histone deacetylase/AcuC/AphA family protein
1215	 62.62	0	1327300..1328139	+	279	39996325	-	GSU1223	-	hypothetical protein
1216	 62.81	0	1328136..1329095	+	319	39996326	-	GSU1224	-	TPR domain-containing protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.