IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
873	 59.88	0	970433..971257	-	274	78222101	-	Gmet_0881	-	hypothetical protein
874	 63.11	0	971379..972305	-	308	78222102	-	Gmet_0882	-	polysaccharide deacetylase
875	 60.33	0	972445..973485	-	346	78222103	-	Gmet_0883	-	hypothetical protein
876	 64.21	0	973538..974473	-	311	78222104	-	Gmet_0884	-	hypothetical protein
877	 62.06	0	974460..975392	-	310	78222105	-	Gmet_0885	-	glycosyl transferase family protein
878	 62.65	0	975396..976616	-	406	78222106	-	Gmet_0886	-	DegT/DnrJ/EryC1/StrS aminotransferase
879	 62.40	0	976641..978305	-	554	78222107	-	Gmet_0887	-	glycosyl transferase family protein
880	 65.02	0	978332..979543	-	403	78222108	-	Gmet_0888	-	peptidase U32
881	 61.68	0	979757..980758	+	333	78222109	-	Gmet_0889	-	peptidoglycan-binding LysM
882	 67.13	+1	980811..981887	+	358	78222110	-	Gmet_0890	-	SMF protein
883	 62.49	0	981935..984211	+	758	78222111	-	Gmet_0891	-	DNA topoisomerase I
884	 67.15	+1	984428..984838	+	136	78222112	-	Gmet_0892	-	hypothetical protein
885	 64.98	0	984835..986139	+	434	78222113	-	Gmet_0893	-	tRNA (uracil-5-)-methyltransferase Gid
886	 57.14	0	986204..986497	+	97	78222114	-	Gmet_0894	-	hypothetical protein
887	 63.56	0	986481..987059	+	192	78222115	-	Gmet_0895	-	Maf-like protein
888	 66.38	+1	987066..987761	+	231	78222116	-	Gmet_0896	-	hypothetical protein
889	 60.50	0	987859..988653	+	264	78222117	-	Gmet_0897	-	polysaccharide deacetylase
890	 59.09	0	988640..988837	+	65	78222118	-	Gmet_0898	-	hypothetical protein
891	 66.54	+1	988961..989773	-	270	78222119	-	Gmet_0899	-	pyrroline-5-carboxylate reductase
892	 53.35	-1	989804..991057	-	417	78222120	-	Gmet_0900	-	IS204/IS1001/IS1096/IS1165 transposase
893	 59.52	0	991444..991989	+	181	78222121	-	Gmet_0901	-	XRE family transcriptional regulator
894	 61.39	0	992180..993373	+	397	78222122	-	Gmet_0902	-	saccharopine dehydrogenase
895	 64.42	0	993566..994720	+	384	78222123	-	Gmet_0903	-	carboxynorspermidine decarboxylase
896	 58.91	0	995010..996917	+	635	78222124	-	Gmet_0904	-	arginine decarboxylase
897	 67.48	+1	997089..998564	+	491	78222125	-	Gmet_0905	-	AAA ATPase, central region
898	 66.93	+1	998686..999846	+	386	78222126	-	Gmet_0906	-	major facilitator transporter
899	 59.60	0	999939..1000391	+	150	78222127	-	Gmet_0907	-	hypothetical protein
900	 59.36	0	1000738..1001955	+	405	78222128	-	Gmet_0908	-	hypothetical protein
901	 60.64	0	1001971..1002750	+	259	78222129	-	Gmet_0909	-	cytochrome c family protein
902	 61.70	0	1002775..1004970	+	731	78222130	-	Gmet_0910	-	hypothetical protein
903	 56.77	0	1005555..1006766	+	403	78222131	-	Gmet_0911	-	hypothetical protein
904	 60.99	0	1006782..1007468	+	228	78222132	-	Gmet_0912	-	cytochrome c family protein
905	 55.80	0	1007498..1008970	+	490	78222133	-	Gmet_0913	-	hypothetical protein
906	 60.09	0	1009070..1009525	+	151	78222134	-	Gmet_0914	-	hypothetical protein
907	 61.40	0	1009589..1009930	+	113	78222135	-	Gmet_0915	-	HNH endonuclease
908	 61.50	0	1010003..1010893	-	296	78222136	-	Gmet_0916	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
909	 60.73	0	1010934..1012583	-	549	78222137	-	Gmet_0917	-	hypothetical protein
910	 62.07	0	1012722..1013765	+	347	78222138	-	Gmet_0918	-	rod shape-determining protein MreB
911	 63.48	0	1013939..1015006	+	355	78222139	-	Gmet_0919	-	glycosyl transferase family protein
912	 65.09	0	1015077..1015646	+	189	78222140	-	Gmet_0920	-	phosphoheptose isomerase
913	 64.56	0	1015643..1016590	+	315	78222141	-	Gmet_0921	-	hypothetical protein
914	 64.49	0	1016630..1018102	+	490	78222142	-	Gmet_0922	-	D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase
915	 66.67	+1	1018089..1018667	+	192	78222143	-	Gmet_0923	-	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase
916	 62.27	0	1018777..1019685	+	302	78222144	-	Gmet_0924	-	glucose-1-phosphate thymidylyltransferase
917	 60.12	0	1019669..1020157	+	162	78222145	-	Gmet_0925	-	hypothetical protein
918	 62.41	0	1020264..1021085	+	273	78222146	-	Gmet_0926	-	rod shape-determining protein MreC
919	 58.44	0	1021082..1021567	+	161	78222147	-	Gmet_0927	-	rod shape-determining protein MreD, putative
920	 60.04	0	1021564..1023495	+	643	78222148	-	Gmet_0928	-	peptidoglycan glycosyltransferase
921	 55.40	0	1023492..1024592	+	366	78222149	-	Gmet_0929	-	rod shape-determining protein RodA
922	 61.36	0	1025438..1026907	+	489	78222150	-	Gmet_0930	-	cytochrome c family protein
923	 55.29	0	1027000..1028502	+	500	78222151	-	Gmet_0931	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
924	 51.26	-1	1028524..1029516	+	330	78222152	-	Gmet_0932	-	PpiC-type peptidyl-prolyl cis-trans isomerase
925	 61.18	0	1029621..1037531	+	2636	78222153	-	Gmet_0933	-	hypothetical protein
926	 57.19	0	1037707..1038360	+	217	78222154	-	Gmet_0934	-	phospholipid/glycerol acyltransferase
927	 63.18	0	1038344..1038802	+	152	78222155	-	Gmet_0935	-	RNase HI
928	 60.95	0	1038799..1039113	+	104	78222156	-	Gmet_0936	-	HNH endonuclease
929	 61.03	0	1039143..1039763	+	206	78222157	-	Gmet_0937	-	HAD family hydrolase
930	 64.58	0	1039789..1040748	-	319	78222158	-	Gmet_0938	-	6-phosphofructokinase
931	 62.59	0	1040745..1042070	-	441	78222159	-	Gmet_0939	-	recombination factor protein RarA
932	 59.91	0	1042085..1044601	-	838	78222160	-	Gmet_0940	-	glycogen/starch/alpha-glucan phosphorylase
933	 63.38	0	1044743..1045594	+	283	78222161	-	Gmet_0941	-	ATP-NAD/AcoX kinase
934	 66.97	+1	1045594..1047258	+	554	78222162	-	Gmet_0942	-	DNA repair protein RecN
935	 60.91	0	1047292..1047621	+	109	78222163	-	Gmet_0943	-	hypothetical protein
936	 59.88	0	1047611..1048465	+	284	78222164	-	Gmet_0944	-	metal dependent phosphohydrolase
937	 60.13	0	1048455..1049372	+	305	78222165	-	Gmet_0945	-	response regulator receiver modulated diguanylate cyclase
938	 60.71	0	1049422..1049874	+	150	78222166	-	Gmet_0946	-	acetyltransferase
939	 65.47	+1	1049893..1051230	+	445	78222167	-	Gmet_0947	-	peptidase U62, modulator of DNA gyrase
940	 67.11	+1	1051389..1053194	+	601	78222168	-	Gmet_0948	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
941	 65.38	+1	1053191..1053736	+	181	78222169	-	Gmet_0949	-	indolepyruvate oxidoreductase subunit B
942	 65.67	+1	1053762..1055063	+	433	78222170	-	Gmet_0950	-	phenylacetate-CoA ligase
943	 61.15	0	1055207..1057906	+	899	78222171	-	Gmet_0951	-	preprotein translocase subunit SecA
944	 64.38	0	1058010..1059191	+	393	78222172	argJ	Gmet_0952	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
945	 62.90	0	1059300..1059644	+	114	78222173	-	Gmet_0953	-	hypothetical protein
946	 63.63	0	1059709..1060959	+	416	78222174	-	Gmet_0954	-	Beta-lactamase
947	 62.05	0	1061055..1062374	+	439	78222175	-	Gmet_0955	-	response regulator receiver domain-containing protein
948	 64.23	0	1062475..1065138	+	887	78222176	valS	Gmet_0956	-	valyl-tRNA synthetase
949	 62.20	0	1065296..1067197	+	633	78222177	-	Gmet_0957	-	diguanylate cyclase/phosphodiesterase
950	 52.87	-1	1067247..1068203	-	318	78222178	-	Gmet_0958	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
951	 62.69	0	1068551..1069330	+	259	78222179	-	Gmet_0959	-	type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
952	 63.91	0	1069341..1070936	+	531	78222180	-	Gmet_0960	-	histidine kinase
953	 64.32	0	1070933..1072297	+	454	78222181	-	Gmet_0961	-	two component, sigma54 specific, Fis family transcriptional regulator
954	 57.02	0	1072394..1072963	+	189	78222182	-	Gmet_0962	-	N-terminal methylation
955	 54.97	0	1073161..1073673	+	170	78222183	-	Gmet_0963	-	N-terminal methylation
956	 52.16	-1	1073681..1074073	+	130	78222184	-	Gmet_0964	-	N-terminal methylation
957	 57.31	0	1074085..1074768	+	227	78222185	-	Gmet_0965	-	N-terminal methylation
958	 59.39	0	1074786..1075307	+	173	78222186	-	Gmet_0966	-	hypothetical protein
959	 57.06	0	1075357..1078449	+	1030	78222187	-	Gmet_0967	-	type IV pilin biogenesis protein, putative
960	 53.22	-1	1078449..1078790	+	113	78222188	-	Gmet_0968	-	hypothetical protein
961	 50.53	-1	1078807..1079370	+	187	78222189	-	Gmet_0969	-	hypothetical protein
962	 51.74	-1	1079806..1080006	+	66	78222190	-	Gmet_0970	-	XRE family transcriptional regulator
963	 57.77	0	1080028..1081083	+	351	78222191	-	Gmet_0971	-	Type IV pilus assembly protein PilM
964	 57.59	0	1081077..1081649	+	190	78222192	-	Gmet_0972	-	fimbrial assembly
965	 54.10	0	1081670..1082266	+	198	78222193	-	Gmet_0973	-	pilus assembly protein, PilO
966	 58.47	0	1082250..1082798	+	182	78222194	-	Gmet_0974	-	putative type IV pilus assembly protein PilP
967	 57.29	0	1082821..1085433	+	870	78222195	-	Gmet_0975	-	type II and III secretion system secretin
968	 65.06	0	1085509..1086690	+	393	78222196	-	Gmet_0976	-	chorismate synthase
969	 60.36	0	1086692..1087198	+	168	78222197	-	Gmet_0977	-	shikimate kinase
970	 62.88	0	1087200..1088282	+	360	78222198	-	Gmet_0978	-	3-dehydroquinate synthase
971	 58.61	0	1088285..1089277	+	330	78222199	-	Gmet_0979	-	TPR repeat-containing protein
972	 59.50	0	1089256..1089618	+	120	78222200	-	Gmet_0980	-	hypothetical protein
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.