IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
792	 55.31	0	880277..881500	-	407	78222020	-	Gmet_0800	-	IS204/IS1001/IS1096/IS1165 transposase
793	 53.80	0	881801..882142	+	113	78222021	-	Gmet_0801	-	PhnA protein
794	 60.00	0	882241..882900	+	219	78222022	-	Gmet_0802	-	tia invasion determinant-related protein
795	 62.61	0	883023..883613	+	196	78222023	-	Gmet_0803	-	TetR family transcriptional regulator
796	 68.66	+1	883667..884671	+	334	78222024	-	Gmet_0804	-	alcohol dehydrogenase
797	 60.14	0	884699..885265	+	188	78222025	-	Gmet_0805	-	flavin reductase-like, FMN-binding
798	 65.74	+1	885298..886488	+	396	78222026	-	Gmet_0806	-	major facilitator transporter
799	 66.79	+1	886500..887312	+	270	78222027	-	Gmet_0807	-	4Fe-4S ferredoxin, iron-sulfur binding protein
800	 58.33	0	887394..887969	+	191	78222028	-	Gmet_0808	-	TetR family transcriptional regulator
801	 63.95	0	888033..889211	+	392	78222029	-	Gmet_0809	-	secretion protein HlyD
802	 62.84	0	889352..892513	+	1053	78222030	-	Gmet_0810	-	hydrophobe/amphiphile efflux-1 HAE1
803	 62.93	0	892515..894068	+	517	78222031	-	Gmet_0811	-	RND efflux system, outer membrane lipoprotein, NodT
804	 63.07	0	894240..895601	-	453	78222032	-	Gmet_0812	-	two component, sigma54 specific, Fis family transcriptional regulator
805	 64.35	0	895706..897046	+	446	78222033	-	Gmet_0813	-	nodulation efficiency protein NfeD
806	 62.40	0	897120..897893	+	257	78222034	-	Gmet_0814	-	SPFH domain-containing protein/band 7 family protein
807	 59.71	0	897972..898991	-	339	78222035	-	Gmet_0815	-	PpiC-type peptidyl-prolyl cis-trans isomerase
808	 62.63	0	899262..902708	+	1148	78222036	-	Gmet_0816	-	pyruvate carboxylase
809	 65.89	+1	902866..903252	+	128	78222037	-	Gmet_0817	-	hypothetical protein
810	 63.49	0	903342..904190	+	282	78222038	-	Gmet_0818	-	nitroreductase
811	 65.50	+1	904271..905554	-	427	78222039	-	Gmet_0819	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
812	 62.88	0	905624..905887	-	87	78222040	-	Gmet_0820	-	hypothetical protein
813	 60.32	0	905950..907587	-	545	78222041	-	Gmet_0821	-	methyl-accepting chemotaxis sensory transducer
814	 59.97	0	907831..908427	+	198	78222042	-	Gmet_0822	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
815	 62.78	0	908533..909432	+	299	78222043	-	Gmet_0823	-	3-beta hydroxysteroid dehydrogenase/isomerase
816	 52.94	-1	909457..909864	-	135	78222044	-	Gmet_0824	-	hypothetical protein
817	 61.66	0	910059..910976	+	305	78222045	-	Gmet_0825	-	cytochrome c family protein
818	 62.31	0	911064..912347	+	427	78222046	-	Gmet_0826	-	hypothetical protein
819	 61.78	0	912372..912842	+	156	78222047	-	Gmet_0827	-	cytochrome c family protein
820	 57.07	0	912854..913603	+	249	78222048	-	Gmet_0828	-	cytochrome c family protein
821	 60.36	0	913666..914379	+	237	78222049	-	Gmet_0829	-	hypothetical protein
822	 54.67	0	914407..915081	+	224	78222050	-	Gmet_0830	-	roadblock/LC7 domain-contain protein
823	 65.22	0	915283..917355	+	690	78222051	-	Gmet_0831	-	hypothetical protein
824	 61.60	0	917464..918450	+	328	78222052	-	Gmet_0832	-	alcohol dehydrogenase
825	 63.92	0	918513..920366	+	617	78222053	-	Gmet_0833	-	Alpha amylase, catalytic region
826	 54.91	0	920404..920871	+	155	78222054	-	Gmet_0834	-	hemerythrin-like, metal-binding protein
827	 60.71	0	920928..921263	+	111	78222055	-	Gmet_0835	-	hypothetical protein
828	 66.50	+1	921351..921941	-	196	78222056	-	Gmet_0836	-	hypothetical protein
829	 66.44	+1	921938..924112	-	724	78222057	-	Gmet_0837	-	twin-arginine translocation pathway signal
830	 66.88	+1	924109..924573	-	154	78222058	-	Gmet_0838	-	ferredoxin:(2Fe-2S)-binding protein
831	 63.27	0	924607..925224	-	205	78222059	-	Gmet_0839	-	putative lipoprotein
832	 63.92	0	925363..926598	-	411	78222060	-	Gmet_0840	-	diguanylate cyclase
833	 61.67	0	926669..927349	-	226	78222061	-	Gmet_0841	-	metallophosphoesterase
834	 67.67	+1	927499..928689	+	396	78222062	-	Gmet_0842	-	8-amino-7-oxononanoate synthase
835	 66.54	+1	928693..929511	+	272	78222063	-	Gmet_0843	-	Alpha/beta hydrolase fold
836	 69.26	+1	929504..930313	+	269	78222064	-	Gmet_0844	-	UbiE/COQ5 methyltransferase
837	 64.32	0	930371..931564	-	397	78222065	-	Gmet_0845	-	SAM-dependent methyltransferase
838	 57.97	0	931626..931901	-	91	78222066	-	Gmet_0846	-	ArsR family transcriptional regulator
839	 63.91	0	932026..933003	-	325	78222067	-	Gmet_0847	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
840	 65.42	+1	933000..933962	-	320	78222068	-	Gmet_0848	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
841	 57.38	0	934081..936213	-	710	78222069	-	Gmet_0849	-	metal dependent phosphohydrolase
842	 59.95	0	936592..937722	+	376	78222070	-	Gmet_0850	-	stage II sporulation-related protein
843	 60.76	0	937712..938743	+	343	78222071	-	Gmet_0851	-	queuosine biosynthesis protein
844	 61.01	0	938789..939901	+	370	78222072	-	Gmet_0852	-	queuine tRNA-ribosyltransferase
845	 58.26	0	939968..940288	+	106	78222073	-	Gmet_0853	-	protein translocase subunit yajC
846	 61.17	0	940320..941921	+	533	78222074	secD	Gmet_0854	-	preprotein translocase subunit SecD
847	 56.99	0	941931..942839	+	302	78222075	secF	Gmet_0855	-	preprotein translocase subunit SecF
848	 57.96	0	942858..943454	+	198	78222076	-	Gmet_0856	-	sugar transporter superfamily protein
849	 60.33	0	943526..945262	+	578	78222077	-	Gmet_0857	-	RecJ exonuclease
850	 54.89	0	945256..946155	+	299	78222078	-	Gmet_0858	-	cation efflux protein
851	 59.46	0	946272..947756	+	494	78222079	-	Gmet_0859	-	response regulator receiver domain-containing protein
852	 61.64	0	947902..949491	+	529	78222080	-	Gmet_0860	-	peptidoglycan-binding LysM
853	 59.51	0	949510..951438	+	642	78222081	-	Gmet_0861	-	type II secretion system protein E
854	 59.44	0	951505..952611	+	368	78222082	-	Gmet_0862	-	prephenate dehydratase / chorismate mutase
855	 61.44	0	952624..953484	+	286	78222083	-	Gmet_0863	-	prephenate dehydrogenase
856	 64.42	0	953523..954812	+	429	78222084	-	Gmet_0864	-	3-phosphoshikimate 1-carboxyvinyltransferase
857	 61.95	0	954818..955516	+	232	78222085	-	Gmet_0865	-	cytidylate kinase
858	 57.36	0	955556..956404	+	282	78222086	-	Gmet_0866	-	LytB protein
859	 57.86	0	956473..958233	+	586	78222087	rpsA	Gmet_0867	-	30S ribosomal protein S1
860	 54.51	0	958359..958646	+	95	78222088	-	Gmet_0868	-	histone-like DNA-binding protein
861	 61.30	0	958808..959161	+	117	78222089	-	Gmet_0869	-	hypothetical protein
862	 61.36	0	959308..959985	+	225	78222090	-	Gmet_0870	-	Serine O-acetyltransferase
863	 63.87	0	960223..960651	+	142	78222091	-	Gmet_0871	-	BadM/Rrf2 family transcriptional regulator
864	 65.62	+1	960680..961822	+	380	78222092	-	Gmet_0872	-	cysteine desulfurase
865	 65.04	0	961819..962925	+	368	78222093	-	Gmet_0873	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
866	 66.51	+1	962940..964235	+	431	78222094	-	Gmet_0874	-	MiaB-like tRNA modifying enzyme
867	 61.07	0	964222..965328	-	368	78222095	-	Gmet_0875	-	response regulator receiver sensor signal transduction histidine kinase
868	 63.14	0	965465..966655	-	396	78222096	-	Gmet_0876	-	hypothetical protein
869	 60.49	0	966664..966987	-	107	78222097	-	Gmet_0877	-	hypothetical protein
870	 65.03	0	967167..967715	+	182	78222098	-	Gmet_0878	-	phosphohistidine phosphatase, SixA
871	 64.60	0	967737..968654	+	305	78222099	-	Gmet_0879	-	hypothetical protein
872	 66.80	+1	968651..970192	+	513	78222100	-	Gmet_0880	-	Ppx/GppA phosphatase
873	 59.88	0	970433..971257	-	274	78222101	-	Gmet_0881	-	hypothetical protein
874	 63.11	0	971379..972305	-	308	78222102	-	Gmet_0882	-	polysaccharide deacetylase
875	 60.33	0	972445..973485	-	346	78222103	-	Gmet_0883	-	hypothetical protein
876	 64.21	0	973538..974473	-	311	78222104	-	Gmet_0884	-	hypothetical protein
877	 62.06	0	974460..975392	-	310	78222105	-	Gmet_0885	-	glycosyl transferase family protein
878	 62.65	0	975396..976616	-	406	78222106	-	Gmet_0886	-	DegT/DnrJ/EryC1/StrS aminotransferase
879	 62.40	0	976641..978305	-	554	78222107	-	Gmet_0887	-	glycosyl transferase family protein
880	 65.02	0	978332..979543	-	403	78222108	-	Gmet_0888	-	peptidase U32
881	 61.68	0	979757..980758	+	333	78222109	-	Gmet_0889	-	peptidoglycan-binding LysM
882	 67.13	+1	980811..981887	+	358	78222110	-	Gmet_0890	-	SMF protein
883	 62.49	0	981935..984211	+	758	78222111	-	Gmet_0891	-	DNA topoisomerase I
884	 67.15	+1	984428..984838	+	136	78222112	-	Gmet_0892	-	hypothetical protein
885	 64.98	0	984835..986139	+	434	78222113	-	Gmet_0893	-	tRNA (uracil-5-)-methyltransferase Gid
886	 57.14	0	986204..986497	+	97	78222114	-	Gmet_0894	-	hypothetical protein
887	 63.56	0	986481..987059	+	192	78222115	-	Gmet_0895	-	Maf-like protein
888	 66.38	+1	987066..987761	+	231	78222116	-	Gmet_0896	-	hypothetical protein
889	 60.50	0	987859..988653	+	264	78222117	-	Gmet_0897	-	polysaccharide deacetylase
890	 59.09	0	988640..988837	+	65	78222118	-	Gmet_0898	-	hypothetical protein
891	 66.54	+1	988961..989773	-	270	78222119	-	Gmet_0899	-	pyrroline-5-carboxylate reductase
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.