IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
734	 59.40	0	817074..817472	-	132	78221962	-	Gmet_0742	-	hypothetical protein
735	 59.81	0	817626..818369	+	247	78221963	-	Gmet_0743	-	hypothetical protein
736	 63.23	0	818496..818990	+	164	78221964	-	Gmet_0744	-	Holliday junction endonuclease RuvC
737	 61.50	0	818987..819586	+	199	78221965	-	Gmet_0745	-	Holliday junction DNA helicase subunit RuvA
738	 64.41	0	819634..820650	+	338	78221966	ruvB	Gmet_0746	-	Holliday junction DNA helicase B
739	 62.70	0	820657..821388	+	243	78221967	-	Gmet_0747	-	regulatory inactivation of DnaA Hda protein
740	 52.68	-1	821669..822376	+	235	78221968	-	Gmet_0748	-	hypothetical protein
741	 62.41	0	822514..824277	-	587	78221969	-	Gmet_0749	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
742	 56.21	0	824509..825225	-	238	78221970	-	Gmet_0750	-	Crp/FNR family transcriptional regulator
743	 60.49	0	825369..827132	-	587	78221971	-	Gmet_0751	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
744	 63.17	0	827507..828049	+	180	78221972	-	Gmet_0752	-	hypothetical protein
745	 59.15	0	828049..828261	+	70	78221973	-	Gmet_0753	-	hypothetical protein
746	 67.61	+1	828358..829419	+	353	78221974	-	Gmet_0754	-	hypothetical protein
747	 69.14	+1	829423..829908	+	161	78221975	-	Gmet_0755	-	hypothetical protein
748	 63.06	0	829919..830140	+	73	78221976	-	Gmet_0756	-	hypothetical protein
749	 70.76	+1	830141..831118	+	325	78221977	-	Gmet_0757	-	hypothetical protein
750	 68.65	+1	831111..831764	+	217	78221978	-	Gmet_0758	-	hypothetical protein
751	 61.37	0	831841..832161	+	106	78221979	-	Gmet_0759	-	hypothetical protein
752	 64.06	0	832155..833840	+	561	78221980	-	Gmet_0760	-	2-octaprenylphenol hydroxylase
753	 63.69	0	834001..835107	-	368	78221981	-	Gmet_0761	-	4Fe-4S ferredoxin, iron-sulfur binding protein
754	 60.70	0	835271..836008	+	245	78221982	-	Gmet_0762	-	response regulator receiver domain-containing protein
755	 63.79	0	836233..839043	-	936	78221983	-	Gmet_0763	-	putative GAF sensor protein
756	 60.60	0	839242..841086	-	614	78221984	-	Gmet_0764	-	hypothetical protein
757	 61.01	0	841121..841915	-	264	78221985	-	Gmet_0765	-	Beta-lactamase-like
758	 65.78	+1	842006..843025	+	339	78221986	-	Gmet_0766	-	glycosyl transferase, group 1
759	 67.63	+1	843112..844560	+	482	78221987	-	Gmet_0767	-	protein of unknown function DUF853, NPT hydrolase putative
760	 65.04	0	844638..844883	-	81	78221988	-	Gmet_0768	-	hypothetical protein
761	 68.02	+1	845100..845543	-	147	78221989	-	Gmet_0769	-	thioesterase superfamily protein
762	 66.21	+1	845540..847942	-	800	78221990	-	Gmet_0770	-	phosphoenolpyruvate synthase
763	 65.69	+1	848051..848662	-	203	78221991	-	Gmet_0771	-	TrpR binding protein WrbA
764	 63.36	0	848755..849147	-	130	78221992	-	Gmet_0772	-	FxsA cytoplasmic membrane protein
765	 68.13	+1	849171..850127	-	318	78221993	-	Gmet_0773	-	cyclic nucleotide-binding domain-containing protein
766	 62.82	0	850145..850690	-	181	78221994	-	Gmet_0774	-	carbonic anhydrase
767	 60.19	0	850874..852247	+	457	78221995	-	Gmet_0775	-	OmpA/MotB
768	 63.88	0	852328..853692	-	454	78221996	-	Gmet_0776	-	two component, sigma54 specific, Fis family transcriptional regulator
769	 62.08	0	853853..856099	-	748	78221997	-	Gmet_0777	-	PAS/PAC sensor signal transduction histidine kinase
770	 51.05	-1	856284..856712	-	142	78221998	-	Gmet_0778	-	response regulator receiver domain-containing protein
771	 54.87	0	856714..858018	-	434	78221999	-	Gmet_0779	-	PAS/PAC sensor signal transduction histidine kinase
772	 58.75	0	858077..860740	-	887	78222000	-	Gmet_0780	-	MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
773	 60.76	0	861062..861907	+	281	78222001	-	Gmet_0781	-	extracellular solute-binding protein
774	 59.57	0	861917..864127	+	736	78222002	-	Gmet_0782	-	diguanylate cyclase/phosphodiesterase
775	 57.57	0	864251..865327	-	358	78222003	-	Gmet_0783	-	hypothetical protein
776	 58.87	0	865751..866353	-	200	78222004	-	Gmet_0784	-	toluene tolerance
777	 64.68	0	866372..867733	-	453	78222005	-	Gmet_0785	-	Outer membrane efflux protein
778	 60.26	0	867761..868213	-	150	78222006	-	Gmet_0786	-	virulence factor MCE-like protein-related protein
779	 61.85	0	868232..868978	-	248	78222007	-	Gmet_0787	-	ABC transporter-related protein
780	 62.02	0	868982..869755	-	257	78222008	-	Gmet_0788	-	hypothetical protein
781	 65.87	+1	869826..871451	-	541	78222009	-	Gmet_0789	-	aldehyde dehydrogenase
782	 64.69	0	871620..872429	+	269	78222010	-	Gmet_0790	-	dienelactone hydrolase
783	 62.24	0	872481..872999	+	172	78222011	-	Gmet_0791	-	hypothetical protein
784	 63.29	0	872996..873499	-	167	78222012	-	Gmet_0792	-	hypothetical protein
785	 64.29	0	873771..874526	+	251	78222013	-	Gmet_0793	-	hypothetical protein
786	 69.92	+1	874669..875745	+	358	78222014	-	Gmet_0794	-	GTPase EngC
787	 66.40	+1	875753..876505	-	250	78222015	-	Gmet_0795	-	hypothetical protein
788	 66.67	+1	876513..877151	-	212	78222016	-	Gmet_0796	-	Allergen V5/Tpx-1 related protein
789	 58.20	0	877148..878092	-	314	78222017	-	Gmet_0797	-	hypothetical protein
790	 65.54	+1	878243..878863	-	206	78222018	-	Gmet_0798	-	lysine exporter protein LysE/YggA
791	 58.87	0	879101..880267	-	388	78222019	-	Gmet_0799	-	methyl-accepting chemotaxis sensory transducer
792	 55.31	0	880277..881500	-	407	78222020	-	Gmet_0800	-	IS204/IS1001/IS1096/IS1165 transposase
793	 53.80	0	881801..882142	+	113	78222021	-	Gmet_0801	-	PhnA protein
794	 60.00	0	882241..882900	+	219	78222022	-	Gmet_0802	-	tia invasion determinant-related protein
795	 62.61	0	883023..883613	+	196	78222023	-	Gmet_0803	-	TetR family transcriptional regulator
796	 68.66	+1	883667..884671	+	334	78222024	-	Gmet_0804	-	alcohol dehydrogenase
797	 60.14	0	884699..885265	+	188	78222025	-	Gmet_0805	-	flavin reductase-like, FMN-binding
798	 65.74	+1	885298..886488	+	396	78222026	-	Gmet_0806	-	major facilitator transporter
799	 66.79	+1	886500..887312	+	270	78222027	-	Gmet_0807	-	4Fe-4S ferredoxin, iron-sulfur binding protein
800	 58.33	0	887394..887969	+	191	78222028	-	Gmet_0808	-	TetR family transcriptional regulator
801	 63.95	0	888033..889211	+	392	78222029	-	Gmet_0809	-	secretion protein HlyD
802	 62.84	0	889352..892513	+	1053	78222030	-	Gmet_0810	-	hydrophobe/amphiphile efflux-1 HAE1
803	 62.93	0	892515..894068	+	517	78222031	-	Gmet_0811	-	RND efflux system, outer membrane lipoprotein, NodT
804	 63.07	0	894240..895601	-	453	78222032	-	Gmet_0812	-	two component, sigma54 specific, Fis family transcriptional regulator
805	 64.35	0	895706..897046	+	446	78222033	-	Gmet_0813	-	nodulation efficiency protein NfeD
806	 62.40	0	897120..897893	+	257	78222034	-	Gmet_0814	-	SPFH domain-containing protein/band 7 family protein
807	 59.71	0	897972..898991	-	339	78222035	-	Gmet_0815	-	PpiC-type peptidyl-prolyl cis-trans isomerase
808	 62.63	0	899262..902708	+	1148	78222036	-	Gmet_0816	-	pyruvate carboxylase
809	 65.89	+1	902866..903252	+	128	78222037	-	Gmet_0817	-	hypothetical protein
810	 63.49	0	903342..904190	+	282	78222038	-	Gmet_0818	-	nitroreductase
811	 65.50	+1	904271..905554	-	427	78222039	-	Gmet_0819	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
812	 62.88	0	905624..905887	-	87	78222040	-	Gmet_0820	-	hypothetical protein
813	 60.32	0	905950..907587	-	545	78222041	-	Gmet_0821	-	methyl-accepting chemotaxis sensory transducer
814	 59.97	0	907831..908427	+	198	78222042	-	Gmet_0822	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
815	 62.78	0	908533..909432	+	299	78222043	-	Gmet_0823	-	3-beta hydroxysteroid dehydrogenase/isomerase
816	 52.94	-1	909457..909864	-	135	78222044	-	Gmet_0824	-	hypothetical protein
817	 61.66	0	910059..910976	+	305	78222045	-	Gmet_0825	-	cytochrome c family protein
818	 62.31	0	911064..912347	+	427	78222046	-	Gmet_0826	-	hypothetical protein
819	 61.78	0	912372..912842	+	156	78222047	-	Gmet_0827	-	cytochrome c family protein
820	 57.07	0	912854..913603	+	249	78222048	-	Gmet_0828	-	cytochrome c family protein
821	 60.36	0	913666..914379	+	237	78222049	-	Gmet_0829	-	hypothetical protein
822	 54.67	0	914407..915081	+	224	78222050	-	Gmet_0830	-	roadblock/LC7 domain-contain protein
823	 65.22	0	915283..917355	+	690	78222051	-	Gmet_0831	-	hypothetical protein
824	 61.60	0	917464..918450	+	328	78222052	-	Gmet_0832	-	alcohol dehydrogenase
825	 63.92	0	918513..920366	+	617	78222053	-	Gmet_0833	-	Alpha amylase, catalytic region
826	 54.91	0	920404..920871	+	155	78222054	-	Gmet_0834	-	hemerythrin-like, metal-binding protein
827	 60.71	0	920928..921263	+	111	78222055	-	Gmet_0835	-	hypothetical protein
828	 66.50	+1	921351..921941	-	196	78222056	-	Gmet_0836	-	hypothetical protein
829	 66.44	+1	921938..924112	-	724	78222057	-	Gmet_0837	-	twin-arginine translocation pathway signal
830	 66.88	+1	924109..924573	-	154	78222058	-	Gmet_0838	-	ferredoxin:(2Fe-2S)-binding protein
831	 63.27	0	924607..925224	-	205	78222059	-	Gmet_0839	-	putative lipoprotein
832	 63.92	0	925363..926598	-	411	78222060	-	Gmet_0840	-	diguanylate cyclase
833	 61.67	0	926669..927349	-	226	78222061	-	Gmet_0841	-	metallophosphoesterase
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.