IslandPathversion 1.0

IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.54 STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2572	 54.37	0	2953402..2953767	+	121	78223800	-	Gmet_2603	-	transcriptional modulator of MazE/toxin, MazF
2573	 60.55	0	2953773..2954459	+	228	78223801	-	Gmet_2604	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
2574	 61.48	0	2954562..2954831	-	89	78223802	-	Gmet_2605	-	hypothetical protein
2575	 58.97	0	2955207..2955635	+	142	78223803	-	Gmet_2606	-	GreA/GreB family elongation factor
2576	 61.59	0	2955707..2956534	-	275	78223804	lpxC	Gmet_2607	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2577	 53.14	-1	2956735..2957451	-	238	78223805	-	Gmet_2608	-	hypothetical protein
2578	 63.84	0	2957711..2958418	+	235	78223806	-	Gmet_2609	-	hypothetical protein
2579	 66.46	+1	2958469..2958957	-	162	78223807	-	Gmet_2610	-	hypothetical protein
2580	 62.50	0	2958968..2959327	-	119	78223808	-	Gmet_2611	-	hypothetical protein
2581	 62.03	0	2959324..2959884	-	186	78223809	-	Gmet_2612	-	RNA polymerase factor sigma-70
2582	 62.35	0	2960020..2960505	+	161	78223810	-	Gmet_2613	-	twin-arginine translocation pathway signal
2583	 62.63	0	2960558..2961349	+	263	78223811	-	Gmet_2614	-	putative GAF sensor protein
2584	 60.57	0	2961359..2961637	-	92	78223812	-	Gmet_2615	-	hypothetical protein
2585	 62.34	0	2961941..2962471	+	176	78223813	-	Gmet_2616	-	guanine-specific ribonuclease N1 and T1
2586	 60.42	0	2962462..2962749	+	95	78223814	-	Gmet_2617	-	hypothetical protein
2587	 63.64	0	2962760..2963485	-	241	78223815	-	Gmet_2618	-	6-phosphogluconolactonase
2588	 64.39	0	2963482..2965020	-	512	78223816	-	Gmet_2619	-	glucose-6-phosphate 1-dehydrogenase
2589	 63.20	0	2965052..2966062	-	336	78223817	-	Gmet_2620	-	6-phosphogluconate dehydrogenase-like protein
2590	 66.67	+1	2966066..2966518	-	150	78223818	-	Gmet_2621	-	ribose/galactose isomerase
2591	 59.04	0	2966568..2967026	-	152	78223819	-	Gmet_2622	-	hypothetical protein
2592	 58.18	0	2967639..2968133	+	164	78223820	-	Gmet_2623	-	glyoxalase/bleomycin resistance protein/dioxygenase
2593	 63.82	0	2968218..2969480	-	420	78223821	-	Gmet_2624	-	hypothetical protein
2594	 57.20	0	2969745..2969987	-	80	78223822	-	Gmet_2625	-	hypothetical protein
2595	 59.96	0	2970099..2970590	+	163	78223823	-	Gmet_2626	-	cytochrome p460, putative
2596	 61.48	0	2970642..2971934	+	430	78223824	-	Gmet_2627	-	esterase/lipase/thioesterase family lipase
2597	 63.19	0	2971960..2974230	+	756	78223825	-	Gmet_2628	-	phospholipase D/transphosphatidylase
2598	 59.53	0	2974275..2976740	-	821	78223826	-	Gmet_2629	-	diguanylate cyclase/phosphodiesterase
2599	 61.72	0	2977012..2978649	-	545	78223827	-	Gmet_2630	-	ABC transporter-related protein
2600	 66.42	+1	2978842..2979246	+	134	78223828	-	Gmet_2631	-	RNA-binding region RNP-1
2601	 63.64	0	2979283..2979711	-	142	78223829	-	Gmet_2632	-	hypothetical protein
2602	 71.65	+2	2979735..2981378	-	547	78223830	-	Gmet_2633	-	ABC transporter-related protein
2603	 71.09	+1	2981375..2983093	-	572	78223831	-	Gmet_2634	-	ABC transporter-related protein
2604	 56.12	0	2983225..2983812	+	195	78223832	-	Gmet_2635	-	heat shock protein Hsp20
2605	 66.89	+1	2983943..2984380	+	145	78223833	-	Gmet_2636	-	hypothetical protein
2606	 62.50	0	2984388..2984867	+	159	78223834	-	Gmet_2637	-	membrane protein-like
2607	 62.73	0	2985002..2986855	+	617	78223835	-	Gmet_2638	-	phosphoenolpyruvate carboxykinase
2608	 60.03	0	2986940..2988130	-	396	78223836	-	Gmet_2639	-	response regulator receiver sensor signal transduction histidine kinase
2609	 66.67	+1	2988228..2988812	-	194	78223837	-	Gmet_2640	-	CheB methylesterase
2610	 56.11	0	2988790..2989632	-	280	78223838	-	Gmet_2641	-	MCP methyltransferase, CheR-type
2611	 61.08	0	2989635..2993285	-	1216	78223839	-	Gmet_2642	-	GAF sensor hybrid histidine kinase
2612	 63.48	0	2993460..2994368	-	302	78223840	-	Gmet_2643	-	2-dehydropantoate 2-reductase
2613	 54.02	0	2995013..2995597	+	194	78223841	-	Gmet_2645	-	TetR family transcriptional regulator
2614	 53.86	0	2995683..2996213	+	176	78223842	-	Gmet_2646	-	alkylhydroperoxidase AhpD core
2615	 57.30	0	2996326..2996955	+	209	78223843	-	Gmet_2647	-	NADPH-dependent FMN reductase
2616	 50.57	-1	2997171..2997431	+	86	78223844	-	Gmet_2648	-	hypothetical protein
2617	 56.69	0	2997490..2997870	+	126	78223845	-	Gmet_2649	-	glyoxalase/bleomycin resistance protein/dioxygenase
2618	 54.84	0	2997897..2998268	+	123	78223846	-	Gmet_2650	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
2619	 57.50	0	2998475..2999347	-	290	78223847	-	Gmet_2651	-	metallophosphoesterase
2620	 62.06	0	2999607..3000647	-	346	78223848	-	Gmet_2652	-	thioredoxin-related protein
2621	 58.16	0	3000691..3001818	-	375	78223849	-	Gmet_2653	-	hypothetical protein
2622	 62.17	0	3001831..3002943	-	370	78223850	-	Gmet_2654	-	thioredoxin-related protein
2623	 61.96	0	3002940..3004001	-	353	78223851	-	Gmet_2655	-	hypothetical protein
2624	 59.18	0	3004013..3004279	-	88	78223852	-	Gmet_2656	-	hypothetical protein
2625	 67.54	+1	3004299..3004643	-	114	78223853	-	Gmet_2657	-	hypothetical protein
2626	 63.71	0	3004695..3007706	-	1003	78223854	-	Gmet_2658	-	PDZ/DHR/GLGF:ankyrin
2627	 63.92	0	3007685..3009070	-	461	78223855	-	Gmet_2659	-	hypothetical protein
2628	 60.25	0	3009045..3009854	-	269	78223856	-	Gmet_2660	-	hypothetical protein
2629	 63.19	0	3009851..3010714	-	287	78223857	-	Gmet_2661	-	ankyrin
2630	 64.55	0	3010751..3013021	-	756	78223858	-	Gmet_2662	-	ankyrin
2631	 62.96	0	3013018..3014259	-	413	78223859	-	Gmet_2663	-	hypothetical protein
2632	 64.06	0	3014263..3015414	-	383	78223860	-	Gmet_2664	-	radical SAM family protein
2633	 59.40	0	3015427..3015894	-	155	78223861	-	Gmet_2665	-	proteinase inhibitor I2
2634	 53.20	-1	3016025..3016321	-	98	78223862	-	Gmet_2666	-	hypothetical protein
2635	 59.29	0	3016492..3017928	+	478	78223863	-	Gmet_2667	-	DUF234 DEXX-box ATPase
2636	 53.70	-1	3017970..3018185	+	71	78223864	-	Gmet_2668	-	hypothetical protein
2637	 63.51	0	3018244..3018687	-	147	78223865	-	Gmet_2669	-	phenylacetic acid degradation-related protein
2638	 66.14	+1	3018713..3019090	-	125	78223866	-	Gmet_2670	-	hypothetical protein
2639	 67.45	+1	3019102..3019863	-	253	78223867	-	Gmet_2671	-	Phage SPO1 DNA polymerase-related protein
2640	 62.27	0	3019913..3020821	+	302	78223868	-	Gmet_2672	-	hypothetical protein
2641	 65.10	0	3020942..3022153	-	403	78223869	-	Gmet_2673	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase
2642	 64.44	0	3022164..3022793	-	209	78223870	-	Gmet_2674	-	Beta-lactamase-like
2643	 62.42	0	3022986..3024140	-	384	78223871	-	Gmet_2675	-	metal dependent phosphohydrolase
2644	 67.85	+1	3024137..3025738	-	533	78223872	-	Gmet_2676	-	FAD dependent oxidoreductase
2645	 58.33	0	3025823..3027010	-	395	78223873	-	Gmet_2677	-	response regulator receiver sensor signal transduction histidine kinase
2646	 56.22	0	3027100..3027549	-	149	78223874	-	Gmet_2678	-	hypothetical protein
2647	 48.97	-1	3027590..3027979	-	129	78223875	-	Gmet_2679	-	response regulator receiver domain-containing protein
2648	 54.61	0	3028043..3028780	-	245	78223876	-	Gmet_2680	-	putative GAF sensor protein
2649	 62.28	0	3028832..3029674	-	280	78223877	-	Gmet_2681	-	transcriptional regulator, putative
2650	 54.97	0	3029684..3030427	-	247	78223878	-	Gmet_2682	-	TPR repeat-containing protein
2651	 58.93	0	3030560..3031477	-	305	78223879	-	Gmet_2683	-	PfkB
2652	 63.54	0	3031508..3032371	-	287	78223880	-	Gmet_2684	-	methylthioadenosine phosphorylase
2653	 56.29	0	3032398..3033438	-	346	78223881	-	Gmet_2685	-	hypothetical protein
2654	 53.62	-1	3033502..3033915	-	137	78223882	-	Gmet_2686	-	nucleoside diphosphate kinase
2655	 54.44	0	3034065..3034334	-	89	78223883	-	Gmet_2687	-	hypothetical protein
2656	 51.20	-1	3034650..3035192	+	180	78223884	-	Gmet_2688	-	AMMECR1
2657	 57.54	0	3035314..3036639	-	441	78223885	-	Gmet_2689	-	type I citrate synthase
2658	 57.04	0	3037032..3038225	-	397	78223886	-	Gmet_2690	-	peptidase M24
2659	 62.00	0	3038272..3038421	-	49	78223887	-	Gmet_2691	-	hypothetical protein
2660	 58.41	0	3038434..3040092	-	552	78223888	-	Gmet_2692	-	acyl-CoA synthetase
2661	 60.50	0	3040555..3041235	+	226	78223889	-	Gmet_2693	-	two component transcriptional regulator
2662	 63.11	0	3041232..3043001	+	589	78223890	-	Gmet_2694	-	PAS/PAC sensor signal transduction histidine kinase
2663	 66.06	+1	3043029..3044021	-	330	78223891	-	Gmet_2695	-	glycerate dehydrogenase
2664	 63.74	0	3044146..3045993	-	615	78223892	-	Gmet_2696	-	carbon starvation protein CstA
2665	 64.18	0	3046200..3046922	-	240	78223893	-	Gmet_2697	-	LytR/AlgR family transcriptional regulator
2666	 65.57	+1	3046903..3048633	-	576	78223894	-	Gmet_2698	-	histidine kinase internal region
2667	 61.82	0	3048743..3049402	-	219	78223895	-	Gmet_2699	-	hypothetical protein
2668	 59.82	0	3049483..3049920	+	145	78223896	-	Gmet_2700	-	hypothetical protein
2669	 61.22	0	3050053..3051081	+	342	78223897	-	Gmet_2701	-	periplasmic phosphate binding protein
2670	 63.54	0	3051272..3052231	+	319	78223898	-	Gmet_2702	-	phosphate ABC transporter permease
2671	 63.57	0	3052231..3053070	+	279	78223899	-	Gmet_2703	-	phosphate ABC transporter permease
59.54	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.