IslandPathversion 1.0

IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.54 STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2321	 55.03	0	2653194..2653382	-	62	78223549	-	Gmet_2346	-	hypothetical protein
2322	 63.67	0	2653398..2654465	-	355	78223550	-	Gmet_2347	-	lipid-A-disaccharide synthase
2323	 64.68	0	2654504..2655814	-	436	78223551	-	Gmet_2348	-	three-deoxy-D-manno-octulosonic-acid transferase-like
2324	 61.07	0	2655873..2657588	-	571	78223552	-	Gmet_2349	-	ABC transporter-related protein
2325	 63.64	0	2657588..2658742	-	384	78223553	lpxB	Gmet_2350	-	lipid-A-disaccharide synthase
2326	 62.22	0	2658808..2659908	-	366	78223554	-	Gmet_2351	-	DegT/DnrJ/EryC1/StrS aminotransferase
2327	 60.66	0	2659917..2660849	-	310	78223555	-	Gmet_2352	-	oxidoreductase-like
2328	 62.78	0	2660846..2661616	-	256	78223556	-	Gmet_2353	-	UDP-N-acetylglucosamine acyltransferase
2329	 55.41	0	2661619..2662071	-	150	78223557	-	Gmet_2354	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
2330	 62.43	0	2662074..2663111	-	345	78223558	-	Gmet_2355	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2331	 52.87	-1	2663115..2663636	-	173	78223559	-	Gmet_2356	-	Outer membrane chaperone Skp (OmpH)
2332	 57.55	0	2663700..2665958	-	752	78223560	-	Gmet_2357	-	surface antigen (D15)
2333	 59.88	0	2666007..2666684	-	225	78223561	-	Gmet_2358	-	ABC transporter-related protein
2334	 57.08	0	2666677..2667948	-	423	78223562	-	Gmet_2359	-	LolC/E family lipoprotein releasing system, transmembrane protein
2335	 59.69	0	2668026..2669501	-	491	78223563	-	Gmet_2360	-	lysyl-tRNA synthetase, class-2
2336	 59.63	0	2669624..2670604	-	326	78223564	-	Gmet_2361	-	hypothetical protein
2337	 63.71	0	2670647..2671120	-	157	78223565	-	Gmet_2362	-	peptidylprolyl isomerase, FKBP-type
2338	 60.59	0	2671136..2671612	-	158	78223566	-	Gmet_2363	-	hypothetical protein
2339	 61.76	0	2671623..2672864	-	413	78223567	-	Gmet_2364	-	hypothetical protein
2340	 60.67	0	2672897..2673697	-	266	78223568	-	Gmet_2365	-	NLP/P60:sporulation-related protein
2341	 61.28	0	2673697..2674791	-	364	78223569	-	Gmet_2366	-	peptide chain release factor 2
2342	 63.22	0	2674828..2676393	-	521	78223570	lnt	Gmet_2367	-	apolipoprotein N-acyltransferase
2343	 59.65	0	2676393..2677247	-	284	78223571	-	Gmet_2368	-	CBS:transporter-associated region
2344	 62.47	0	2677291..2678076	-	261	78223572	-	Gmet_2369	-	phosphoesterase, PA-phosphatase related
2345	 62.91	0	2678069..2678521	-	150	78223573	-	Gmet_2370	-	hypothetical protein
2346	 59.40	0	2678418..2680826	-	802	78223574	-	Gmet_2371	-	metal dependent phosphohydrolase
2347	 60.85	0	2681086..2682375	+	429	78223575	-	Gmet_2372	-	enolase
2348	 63.24	0	2682523..2683953	+	476	78223576	-	Gmet_2373	-	nicotinate phosphoribosyltransferase
2349	 61.83	0	2683974..2684573	+	199	78223577	-	Gmet_2374	-	isochorismatase hydrolase
2350	 61.24	0	2684673..2685740	+	355	78223578	-	Gmet_2375	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2351	 55.31	0	2685798..2687021	-	407	78223579	-	Gmet_2376	-	IS204/IS1001/IS1096/IS1165 transposase
2352	 64.34	0	2687129..2687686	-	185	78223580	-	Gmet_2377	-	SNase-like nuclease
2353	 59.53	0	2687765..2689390	-	541	78223581	-	Gmet_2378	-	D-3-phosphoglycerate dehydrogenase
2354	 59.33	0	2689561..2690037	+	158	78223582	-	Gmet_2379	-	tRNA/rRNA methyltransferase (SpoU)
2355	 63.57	0	2690031..2690417	+	128	78223583	-	Gmet_2380	-	hypothetical protein
2356	 63.39	0	2690401..2692110	-	569	78223584	-	Gmet_2381	-	transmembrane protein
2357	 59.82	0	2692119..2692907	-	262	78223585	-	Gmet_2382	-	metal dependent phosphohydrolase
2358	 61.06	0	2693036..2694319	-	427	78223586	-	Gmet_2383	-	fructose-bisphosphate aldolase
2359	 60.89	0	2694617..2695654	+	345	78223587	-	Gmet_2384	-	tRNA 2-selenouridine synthase
2360	 63.03	0	2695691..2696542	-	283	78223588	-	Gmet_2385	-	rhomboid-like protein
2361	 53.25	-1	2696877..2698046	+	389	78223589	-	Gmet_2386	-	transposase IS4
2362	 54.10	0	2698398..2698580	+	60	78223590	-	Gmet_2387	-	hypothetical protein
2363	 58.69	0	2698613..2699101	+	162	78223591	-	Gmet_2388	-	hypothetical protein
2364	 62.33	0	2699173..2699841	-	222	78223592	-	Gmet_2389	-	hypothetical protein
2365	 60.92	0	2699868..2701154	-	428	78223593	-	Gmet_2390	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2366	 60.16	0	2701272..2702762	-	496	78223594	-	Gmet_2391	-	glycoside hydrolase family protein
2367	 52.73	-1	2702904..2703068	+	54	78223595	-	Gmet_2392	-	hypothetical protein
2368	 57.96	0	2703062..2704921	-	619	78223596	-	Gmet_2393	-	FtsH peptidase
2369	 53.98	0	2705027..2705956	-	309	78223597	-	Gmet_2394	-	hypothetical protein
2370	 57.14	0	2706051..2706806	-	251	78223598	-	Gmet_2395	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2371	 59.61	0	2706806..2708719	-	637	78223599	sdhA	Gmet_2396	-	succinate dehydrogenase flavoprotein subunit
2372	 51.58	-1	2708729..2709391	-	220	78223600	-	Gmet_2397	-	succinate dehydrogenase subunit C
2373	 57.00	0	2709976..2711082	+	368	78223601	-	Gmet_2398	-	queuine tRNA-ribosyltransferase
2374	 58.36	0	2711163..2711957	+	264	78223602	mazG	Gmet_2399	-	nucleoside triphosphate pyrophosphohydrolase
2375	 61.81	0	2712288..2713853	-	521	78223603	-	Gmet_2400	-	virulence factor MVIN-like
2376	 65.44	+1	2713913..2716033	-	706	78223604	-	Gmet_2401	-	hypothetical protein
2377	 58.69	0	2716126..2716476	-	116	78223605	-	Gmet_2402	-	hypothetical protein
2378	 60.57	0	2716531..2717334	-	267	78223606	-	Gmet_2403	-	tetratricopeptide TPR_4
2379	 62.63	0	2717497..2719851	+	784	78223607	-	Gmet_2404	-	phosphoenolpyruvate--protein phosphotransferase
2380	 63.06	0	2719888..2721051	-	387	78223608	-	Gmet_2405	-	hypothetical protein
2381	 61.92	0	2721052..2722209	-	385	78223609	-	Gmet_2406	-	hypothetical protein
2382	 67.67	+1	2722213..2722908	-	231	78223610	-	Gmet_2407	-	ABC transporter-related protein
2383	 65.43	+1	2722909..2724123	-	404	78223611	-	Gmet_2408	-	secretion protein HlyD
2384	 63.49	0	2724289..2724792	-	167	78223612	-	Gmet_2409	-	peptidase C56, PfpI
2385	 61.49	0	2724867..2725445	-	192	78223613	-	Gmet_2410	-	manganese and iron superoxide dismutase
2386	 63.48	0	2725567..2725848	-	93	78223614	-	Gmet_2411	-	hypothetical protein
2387	 64.14	0	2725889..2727274	-	461	78223615	asnC	Gmet_2412	-	asparaginyl-tRNA synthetase
2388	 57.74	0	2727370..2727750	+	126	78223616	-	Gmet_2413	-	glutaredoxin-like protein, YruB
2389	 61.42	0	2727843..2728223	-	126	78223617	-	Gmet_2414	-	hypothetical protein
2390	 62.17	0	2728216..2729082	-	288	78223618	-	Gmet_2415	-	YdjC-like protein
2391	 61.97	0	2729096..2730523	-	475	78223619	-	Gmet_2416	-	radical SAM family protein
2392	 59.47	0	2730634..2731869	-	411	78223620	-	Gmet_2417	-	diguanylate phosphodiesterase
2393	 65.54	+1	2732018..2733085	-	355	78223621	-	Gmet_2418	-	response regulator receiver (CheY-like) modulated CheB methylesterase
2394	 62.32	0	2733121..2733603	-	160	78223622	-	Gmet_2419	-	CheD, stimulates methylation of MCP proteins
2395	 61.03	0	2733600..2734469	-	289	78223623	-	Gmet_2420	-	MCP methyltransferase, CheR-type
2396	 59.03	0	2734499..2735035	-	178	78223624	-	Gmet_2421	-	CheW protein
2397	 59.47	0	2735356..2738496	-	1046	78223625	-	Gmet_2422	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
2398	 57.71	0	2738791..2741013	-	740	78223626	-	Gmet_2423	-	methyl-accepting chemotaxis sensory transducer
2399	 57.39	0	2741239..2742984	-	581	78223627	-	Gmet_2424	-	methyl-accepting chemotaxis sensory transducer
2400	 60.26	0	2743282..2744343	-	353	78223628	-	Gmet_2425	-	diguanylate cyclase
2401	 60.55	0	2744770..2747253	-	827	78223629	-	Gmet_2426	-	Hpt sensor hybrid histidine kinase
2402	 63.63	0	2747417..2749525	-	702	78223630	-	Gmet_2427	-	CheA signal transduction histidine kinase
2403	 60.47	0	2749525..2749911	-	128	78223631	-	Gmet_2428	-	response regulator receiver domain-containing protein
2404	 59.23	0	2749890..2750252	-	120	78223632	-	Gmet_2429	-	anti-sigma-factor antagonist domain-containing protein
2405	 64.32	0	2750302..2752179	-	625	78223633	-	Gmet_2430	-	methyl-accepting chemotaxis sensory transducer
2406	 56.06	0	2752334..2752729	-	131	78223634	-	Gmet_2431	-	response regulator receiver domain-containing protein
2407	 57.17	0	2752888..2753361	-	157	78223635	-	Gmet_2432	-	hypothetical protein
2408	 61.67	0	2753856..2755616	+	586	78223636	-	Gmet_2433	-	potassium-transporting ATPase subunit A
2409	 63.24	0	2755620..2757689	+	689	78223637	-	Gmet_2434	-	potassium-translocating P-type ATPase, B subunit
2410	 59.47	0	2757704..2758273	+	189	78223638	-	Gmet_2435	-	K+ transporting ATPase, KdpC subunit
2411	 63.44	0	2758270..2760936	+	888	78223639	-	Gmet_2436	-	osmosensitive K+ channel signal transduction histidine kinase
2412	 64.67	0	2760947..2761648	+	233	78223640	-	Gmet_2437	-	two component transcriptional regulator
2413	 61.18	0	2761676..2763280	-	534	78223641	-	Gmet_2438	-	hypothetical protein
2414	 67.98	+1	2763330..2764088	-	252	78223642	-	Gmet_2439	-	cobalt transport protein ATP-binding subunit
2415	 65.07	0	2764085..2764897	-	270	78223643	-	Gmet_2440	-	cobalt ABC transporter CbiQ, permease subunit
2416	 65.99	+1	2764934..2765974	-	346	78223644	-	Gmet_2441	-	cobalamin (vitamin B12) biosynthesis CbiM protein
2417	 63.26	0	2766516..2767160	-	214	78223645	-	Gmet_2442	-	Iron dependent repressor:FeoA
2418	 57.38	0	2767202..2767384	-	60	78223646	-	Gmet_2443	-	hypothetical protein
2419	 62.25	0	2767381..2769372	-	663	78223647	-	Gmet_2444	-	ferrous iron transport protein B
2420	 58.56	0	2769472..2769903	-	143	78223648	-	Gmet_2445	-	ferric uptake regulator family protein
59.54	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.