IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2013	 53.93	0	2277374..2278723	-	449	78223241	-	Gmet_2034	-	two component, sigma54 specific, Fis family transcriptional regulator
2014	 50.92	-1	2278713..2279747	-	344	78223242	-	Gmet_2035	-	signal transduction histidine kinase, nitrogen specific, NtrB
2015	 50.22	-1	2279895..2280581	+	228	78223243	-	Gmet_2036	-	abortive infection protein
2016	 45.88	-2	2280861..2281673	+	270	78223244	-	Gmet_2037	-	hypothetical protein
2017	 43.73	-2	2281732..2282433	-	233	78223245	-	Gmet_2038	-	hypothetical protein
2018	 53.60	-1	2282539..2283579	+	346	78223246	-	Gmet_2039	-	putative transposase
2019	 46.52	-2	2283827..2284630	-	267	78223247	-	Gmet_2040	-	dehydrogenase catalytic domain-containing protein
2020	 45.70	-2	2284638..2285858	-	406	78223248	-	Gmet_2041	-	putative glycosyl transferase
2021	 46.75	-2	2285947..2286915	-	322	78223249	-	Gmet_2042	-	hypothetical protein
2022	 55.10	0	2287576..2295390	+	2604	78223250	-	Gmet_2043	-	hypothetical protein
2023	 52.76	-1	2295744..2296850	+	368	78223251	-	Gmet_2044	-	hypothetical protein
2024	 53.88	0	2296953..2298008	-	351	78223252	-	Gmet_2045	-	hypothetical protein
2025	 51.89	-1	2298011..2298883	-	290	78223253	-	Gmet_2046	-	UBA/THIF-type NAD/FAD binding fold
2026	 54.49	0	2299004..2299537	-	177	78223254	-	Gmet_2047	-	hypothetical protein
2027	 54.74	0	2299699..2300721	+	340	78223255	-	Gmet_2048	-	cytochrome c family protein
2028	 58.83	0	2300819..2302120	-	433	78223256	-	Gmet_2049	-	hypothetical protein
2029	 56.46	0	2302120..2303226	-	368	78223257	-	Gmet_2050	-	hypothetical protein
2030	 48.89	-1	2303281..2303505	-	74	78223258	-	Gmet_2051	-	host factor Hfq
2031	 61.08	0	2303517..2304446	-	309	78223259	-	Gmet_2052	-	tRNA isopentenyltransferase
2032	 64.85	0	2304458..2306326	-	622	78223260	-	Gmet_2053	-	DNA mismatch repair protein MutL
2033	 58.60	0	2306454..2307779	-	441	78223261	-	Gmet_2054	-	Acetyl-CoA hydrolase/transferase
2034	 56.18	0	2308428..2310230	-	600	78223262	-	Gmet_2055	-	transcriptional regulator
2035	 57.11	0	2310406..2311263	-	285	78223263	-	Gmet_2056	-	amidohydrolase 2
2036	 62.37	0	2311305..2312141	-	278	78223264	-	Gmet_2057	-	short chain enoyl-CoA hydratase / enoyl-CoA hydratase
2037	 61.33	0	2312207..2313406	-	399	78223265	-	Gmet_2058	-	thiolase
2038	 58.60	0	2313441..2314184	-	247	78223266	-	Gmet_2059	-	3-oxoacyl-[acyl-carrier-protein] reductase
2039	 61.84	0	2314429..2316336	-	635	78223267	-	Gmet_2060	-	fusaric acid resistance protein region
2040	 58.09	0	2316532..2318547	+	671	78223268	-	Gmet_2061	-	Na+/solute symporter
2041	 59.40	0	2318631..2319731	+	366	78223269	-	Gmet_2062	-	serine phosphatase
2042	 62.33	0	2319728..2320672	-	314	78223270	-	Gmet_2063	-	thioesterase-like
2043	 59.36	0	2320696..2321475	-	259	78223271	-	Gmet_2064	-	IclR family transcriptional regulator
2044	 63.18	0	2321547..2323523	-	658	78223272	-	Gmet_2065	-	hypothetical protein
2045	 63.40	0	2323563..2324909	-	448	78223273	-	Gmet_2066	-	electron transfer flavoprotein subunit alpha
2046	 63.59	0	2324930..2325742	-	270	78223274	-	Gmet_2067	-	electron transfer flavoprotein subunit beta
2047	 64.09	0	2325874..2326764	-	296	78223275	-	Gmet_2068	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
2048	 62.29	0	2326778..2327941	-	387	78223276	-	Gmet_2069	-	succinyl-CoA synthetase (ADP-forming) beta subunit
2049	 61.19	0	2328262..2330253	-	663	78223277	-	Gmet_2070	-	hypothetical protein
2050	 61.94	0	2330299..2331081	-	260	78223278	-	Gmet_2071	-	short chain enoyl-CoA hydratase
2051	 61.82	0	2331096..2331941	-	281	78223279	-	Gmet_2072	-	3-hydroxyacyl-CoA dehydrogenase
2052	 52.77	-1	2332226..2333182	+	318	78223280	-	Gmet_2073	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
2053	 63.01	0	2333226..2334401	-	391	78223281	-	Gmet_2074	-	thiolase
2054	 61.58	0	2334414..2335592	-	392	78223282	-	Gmet_2075	-	Acyl-CoA dehydrogenase-like
2055	 61.36	0	2335777..2336568	-	263	78223283	-	Gmet_2076	-	formate dehydrogenase, subunit FdhD
2056	 52.35	-1	2336590..2337057	-	155	78223284	-	Gmet_2077	-	GCN5-related N-acetyltransferase
2057	 57.55	0	2337234..2338538	-	434	78223285	-	Gmet_2078	-	hypothetical protein
2058	 59.97	0	2338563..2339219	-	218	78223286	-	Gmet_2079	-	4Fe-4S ferredoxin, iron-sulfur binding protein
2059	 61.84	0	2339231..2341138	-	635	78223287	-	Gmet_2080	-	respiratory-chain NADH dehydrogenase domain-containing protein
2060	 57.40	0	2341148..2341600	-	150	78223288	-	Gmet_2081	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
2061	 58.59	0	2341679..2341777	-	32	78223289	-	Gmet_2082	-	hypothetical protein
2062	 59.31	0	2341789..2342427	-	212	78223290	-	Gmet_2083	-	methyl-viologen-reducing hydrogenase, delta subunit
2063	 62.27	0	2342607..2345651	-	1014	78223291	-	Gmet_2084	-	4Fe-4S ferredoxin, iron-sulfur binding protein
2064	 61.34	0	2345703..2346866	-	387	78223292	-	Gmet_2085	-	protein of unknown function DUF224, cysteine-rich region
2065	 60.37	0	2346881..2347420	-	179	78223293	-	Gmet_2086	-	4Fe-4S ferredoxin, iron-sulfur binding protein
2066	 59.79	0	2347469..2349430	-	653	78223294	-	Gmet_2087	-	aldehyde ferredoxin oxidoreductase
2067	 62.04	0	2349629..2350774	-	381	78223295	-	Gmet_2088	-	enoyl-CoA hydratase/isomerase
2068	 46.44	-2	2351075..2351425	+	116	78223296	-	Gmet_2089	-	hypothetical protein
2069	 39.24	-2	2351605..2352078	+	157	78223297	-	Gmet_2090	-	hypothetical protein
2070	 58.40	0	2352163..2353239	+	358	78223298	-	Gmet_2091	-	transposase IS4
2071	 38.99	-2	2353432..2356647	+	1071	78223299	-	Gmet_2092	-	hypothetical protein
2072	 53.25	-1	2356911..2358080	-	389	78223300	-	Gmet_2093	-	transposase IS4
2073	 59.91	0	2358233..2358691	-	152	78223301	-	Gmet_2094	-	MOSC
2074	 56.68	0	2358719..2359699	-	326	78223302	-	Gmet_2095	-	GTP cyclohydrolase subunit MoaA
2075	 55.03	0	2360064..2360510	+	148	78223303	-	Gmet_2096	-	GCN5-related N-acetyltransferase
2076	 54.40	0	2360592..2361023	+	143	78223304	-	Gmet_2097	-	BadM/Rrf2 family transcriptional regulator
2077	 58.39	0	2361247..2362152	-	301	78223305	-	Gmet_2098	-	phosphate butyryltransferase
2078	 57.45	0	2362565..2364289	-	574	78223306	-	Gmet_2099	-	Fis family transcriptional regulator
2079	 59.62	0	2364923..2366752	+	609	78223307	-	Gmet_2100	-	hypothetical protein
2080	 62.84	0	2366780..2367928	+	382	78223308	-	Gmet_2101	-	pyruvate phosphate dikinase, PEP/pyruvate-binding
2081	 59.09	0	2367981..2369525	+	514	78223309	-	Gmet_2102	-	carboxylyase-like protein
2082	 62.29	0	2369593..2370849	+	418	78223310	-	Gmet_2103	-	hypothetical protein
2083	 56.24	0	2370864..2371304	+	146	78223311	-	Gmet_2104	-	signal-transduction protein
2084	 59.90	0	2371392..2371997	+	201	78223312	-	Gmet_2105	-	3-octaprenyl-4hydroxybenzoate decarboxylase
2085	 63.06	0	2372028..2373107	+	359	78223313	-	Gmet_2106	-	butyrate kinase
2086	 59.78	0	2373162..2374091	+	309	78223314	-	Gmet_2107	-	putative signal peptide protein
2087	 57.42	0	2374164..2374736	+	190	78223315	-	Gmet_2108	-	metal dependent phosphohydrolase
2088	 58.30	0	2374764..2376185	+	473	78223316	-	Gmet_2109	-	Fis family transcriptional regulator
2089	 57.02	0	2376501..2377868	+	455	78223317	-	Gmet_2110	-	hypothetical protein
2090	 58.25	0	2377865..2378149	+	94	78223318	-	Gmet_2111	-	hypothetical protein
2091	 64.03	0	2378160..2378879	-	239	78223319	-	Gmet_2112	-	HAD family hydrolase
2092	 59.33	0	2378902..2379378	-	158	78223320	-	Gmet_2113	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
2093	 61.21	0	2379375..2381096	-	573	78223321	-	Gmet_2114	-	Fis family transcriptional regulator
2094	 57.91	0	2381099..2382709	-	536	78223322	-	Gmet_2115	-	putative PAS/PAC sensor protein
2095	 60.34	0	2382728..2384467	-	579	78223323	-	Gmet_2116	-	Fis family transcriptional regulator
2096	 60.65	0	2385116..2386261	+	381	78223324	-	Gmet_2117	-	hypothetical protein
2097	 65.80	+1	2386317..2388164	+	615	78223325	-	Gmet_2118	-	FAD dependent oxidoreductase
2098	 60.35	0	2388194..2388937	+	247	78223326	-	Gmet_2119	-	cytochrome b/b6-like
2099	 59.58	0	2388979..2389500	+	173	78223327	-	Gmet_2120	-	hypothetical protein
2100	 60.12	0	2389537..2390055	+	172	78223328	-	Gmet_2121	-	twin-arginine translocation pathway signal
2101	 60.06	0	2390071..2391009	+	312	78223329	-	Gmet_2122	-	cytochrome c, class I
2102	 57.89	0	2391047..2391445	+	132	78223330	-	Gmet_2123	-	hypothetical protein
2103	 60.24	0	2391442..2391861	+	139	78223331	-	Gmet_2124	-	twin-arginine translocation pathway signal
2104	 61.47	0	2391878..2393473	+	531	78223332	-	Gmet_2125	-	4-cresol dehydrogenase (hydroxylating)
2105	 61.23	0	2393500..2395062	+	520	78223333	-	Gmet_2126	-	FAD linked oxidase-like
2106	 58.01	0	2395093..2396016	+	307	78223334	-	Gmet_2127	-	phenol degradation-like protein
2107	 58.95	0	2396057..2397145	+	362	78223335	-	Gmet_2128	-	butyrate kinase
2108	 58.72	0	2397203..2397970	+	255	78223336	-	Gmet_2129	-	Short-chain dehydrogenase/reductase SDR
2109	 53.88	0	2397986..2398384	+	132	78223337	-	Gmet_2130	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
2110	 62.65	0	2398403..2399845	+	480	78223338	-	Gmet_2131	-	aldehyde dehydrogenase
2111	 51.74	-1	2399929..2400129	+	66	78223339	-	Gmet_2132	-	twin-arginine translocation protein TatA/E
2112	 58.45	0	2400210..2400623	+	137	78223340	-	Gmet_2133	-	MarR family transcriptional regulator
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.