IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
111	 64.84	0	139091..139855	-	254	78221339	-	Gmet_0112	-	heat shock protein DnaJ-like
112	 57.30	0	140100..140462	+	120	78221340	-	Gmet_0113	-	hypothetical protein
113	 58.71	0	140475..140876	-	133	78221341	-	Gmet_0114	-	hypothetical protein
114	 63.40	0	141014..141871	-	285	78221342	-	Gmet_0115	-	patatin
115	 67.43	+1	141947..142996	-	349	78221343	-	Gmet_0116	-	hydrogenase expression/formation protein HypE
116	 67.95	+1	142993..144084	-	363	78221344	-	Gmet_0117	-	hydrogenase formation HypD protein
117	 60.61	0	144081..144311	-	76	78221345	-	Gmet_0118	-	hydrogenase expression/formation protein (HUPF/HYPC)
118	 68.24	+1	144317..146599	-	760	78221346	-	Gmet_0119	-	hydrogenase maturation protein HypF
119	 63.40	0	146616..147350	-	244	78221347	-	Gmet_0120	-	hydrogenase accessory protein HypB
120	 65.18	0	147559..147894	+	111	78221348	-	Gmet_0121	-	cytochrome c family protein, putative
121	 65.42	+1	147911..149353	+	480	78221349	-	Gmet_0122	-	pyruvate kinase
122	 67.82	+1	149369..150493	+	374	78221350	-	Gmet_0123	-	flavin oxidoreductase/NADH oxidase
123	 68.13	+1	150580..151875	+	431	78221351	-	Gmet_0124	-	radical SAM family protein
124	 69.34	+1	151872..152618	+	248	78221352	-	Gmet_0125	-	hypothetical protein
125	 63.19	0	152699..152986	+	95	78221353	-	Gmet_0126	-	hypothetical protein
126	 64.62	0	152989..153720	+	243	78221354	-	Gmet_0127	-	hypothetical protein
127	 64.00	0	153799..156612	-	937	78221355	-	Gmet_0128	-	excinuclease ABC subunit A
128	 62.54	0	156786..157076	-	96	78221356	-	Gmet_0129	-	hypothetical protein
129	 63.29	0	157342..157992	+	216	78221357	-	Gmet_0130	-	putative prophage repressor
130	 64.49	0	158320..158961	+	213	78221358	-	Gmet_0131	-	hypothetical protein
131	 52.87	-1	159269..160225	+	318	78221359	-	Gmet_0132	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
132	 67.08	+1	160295..162481	-	728	78221360	-	Gmet_0133	-	polyphosphate kinase
133	 59.43	0	162483..163436	-	317	78221361	-	Gmet_0134	-	magnesium/cobalt transporter CorA
134	 67.59	+1	163535..164944	-	469	78221362	-	Gmet_0135	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
135	 65.12	0	165102..165746	+	214	78221363	-	Gmet_0136	-	ribosomal L11 methyltransferase
136	 61.33	0	165784..166383	+	199	78221364	-	Gmet_0137	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
137	 65.39	+1	166488..167897	+	469	78221365	-	Gmet_0138	-	hypothetical protein
138	 66.84	+1	167907..169037	-	376	78221366	-	Gmet_0139	-	hypothetical protein
139	 65.26	0	169144..169854	-	236	78221367	-	Gmet_0140	-	hypothetical protein
140	 65.42	+1	170135..170854	-	239	78221368	-	Gmet_0141	-	cytochrome c assembly protein
141	 63.04	0	171026..172267	+	413	78221369	-	Gmet_0142	-	hypothetical protein
142	 63.94	0	172442..173467	+	341	78221370	-	Gmet_0143	-	putative lipoprotein
143	 66.23	+1	173599..175206	+	535	78221371	-	Gmet_0144	-	thiolase, putative
144	 55.45	0	175224..175526	+	100	78221372	-	Gmet_0145	-	hypothetical protein
145	 57.78	0	175545..175769	+	74	78221373	-	Gmet_0146	-	hypothetical protein
146	 68.32	+1	175822..180354	+	1510	78221374	-	Gmet_0147	-	glutamate synthase (ferredoxin)
147	 62.96	0	180391..180579	+	62	78221375	-	Gmet_0148	-	4Fe-4S ferredoxin, iron-sulfur binding protein
148	 67.08	+1	180613..181827	+	404	78221376	-	Gmet_0149	-	acetate kinase
149	 64.27	0	182924..183340	+	138	78221377	-	Gmet_0152	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
150	 65.66	+1	183479..185854	+	791	78221378	-	Gmet_0153	-	trifunctional NADH dehydrogenase I subunit B/C/D
151	 66.09	+1	185865..186386	+	173	78221379	-	Gmet_0154	-	NADH dehydrogenase subunit E
152	 59.76	0	186383..186715	+	110	78221380	-	Gmet_0155	-	cytochrome c, class I
153	 61.06	0	186775..187113	+	112	78221381	-	Gmet_0156	-	hypothetical protein
154	 68.16	+1	187117..188385	+	422	78221382	-	Gmet_0157	-	respiratory-chain NADH dehydrogenase domain-containing protein
155	 65.96	+1	188385..188954	+	189	78221383	-	Gmet_0158	-	hypothetical protein
156	 68.27	+1	188964..190892	+	642	78221384	-	Gmet_0159	-	NADH dehydrogenase subunit G
157	 51.61	-1	191076..191447	+	123	78221385	-	Gmet_0160	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
158	 64.34	0	191547..192536	+	329	78221386	-	Gmet_0161	-	respiratory-chain NADH dehydrogenase, subunit 1
159	 62.91	0	192666..193091	+	141	78221387	-	Gmet_0162	-	ankyrin
160	 66.31	+1	193125..193679	+	184	78221388	-	Gmet_0163	-	NADH dehydrogenase subunit I
161	 56.31	0	193772..193993	+	73	78221389	-	Gmet_0164	-	hypothetical protein
162	 65.02	0	194113..194598	+	161	78221390	-	Gmet_0165	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
163	 56.84	0	194652..194936	+	94	78221391	-	Gmet_0166	-	hypothetical protein
164	 63.43	0	194952..195260	+	102	78221392	-	Gmet_0167	-	NADH-ubiquinone oxidoreductase, chain 4L
165	 66.61	+1	195257..197134	+	625	78221393	-	Gmet_0168	-	NADH-plastoquinone oxidoreductase, chain 5
166	 68.54	+1	197199..197891	+	230	78221394	-	Gmet_0169	-	hypothetical protein
167	 58.96	0	197988..199778	+	596	78221395	-	Gmet_0170	-	cytochrome c family protein
168	 66.06	+1	199995..201485	+	496	78221396	-	Gmet_0171	-	proton-translocating NADH-quinone oxidoreductase, chain M
169	 68.09	+1	201482..202882	+	466	78221397	-	Gmet_0172	-	proton-translocating NADH-quinone oxidoreductase, chain N
170	 63.96	0	202895..203227	+	110	78221398	-	Gmet_0173	-	hypothetical protein
171	 65.67	+1	203391..204290	+	299	78221399	-	Gmet_0175	-	hypothetical protein
172	 67.55	+1	204287..205081	-	264	78221400	-	Gmet_0176	-	hypothetical protein
173	 66.95	+1	205113..206522	-	469	78221401	-	Gmet_0177	-	mercuric reductase MerA
174	 69.86	+1	206604..208610	+	668	78221402	-	Gmet_0178	-	transketolase
175	 71.00	+1	208617..209216	+	199	78221403	-	Gmet_0179	-	DTW
176	 67.51	+1	209394..209870	+	158	78221404	-	Gmet_0180	-	MaoC-like dehydratase
177	 65.01	0	209936..210358	+	140	78221405	-	Gmet_0181	-	putative thiol-disulphide oxidoreductase DCC
178	 67.72	+1	210642..212915	+	757	78221406	-	Gmet_0182	-	RNA binding S1
179	 65.89	+1	213288..213803	-	171	78221407	-	Gmet_0183	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
180	 62.55	0	213885..214394	-	169	78221408	-	Gmet_0184	-	putative chemotaxis protein CheX
181	 67.44	+1	214613..215779	+	388	78221409	-	Gmet_0185	-	hypothetical protein
182	 57.35	0	216182..217072	-	296	78221410	-	Gmet_0186	-	LysR family transcriptional regulator
183	 60.77	0	217180..218112	+	310	78221411	-	Gmet_0187	-	hypothetical protein
184	 67.31	+1	218230..219315	-	361	78221412	-	Gmet_0188	-	ribonuclease Z
185	 64.21	0	219554..220531	-	325	78221413	-	Gmet_0189	-	delta-aminolevulinic acid dehydratase
186	 64.84	0	220758..221195	+	145	78221414	-	Gmet_0190	-	DoxX
187	 60.52	0	221225..221923	-	232	78221415	-	Gmet_0191	-	hypothetical protein
188	 64.71	0	222076..223659	+	527	78221416	-	Gmet_0192	-	peptide chain release factor 3
189	 67.55	+1	223766..224557	+	263	78221417	-	Gmet_0193	-	hypothetical protein
190	 69.31	+1	224565..225737	+	390	78221418	-	Gmet_0194	-	hypothetical protein
191	 63.33	0	225734..226183	+	149	78221419	-	Gmet_0195	-	phosphatidylglycerophosphatase
192	 67.79	+1	226180..227421	+	413	78221420	-	Gmet_0196	-	competence/damage-inducible protein cinA
193	 62.03	0	227447..229579	+	710	78221421	-	Gmet_0197	-	multi-sensor signal transduction histidine kinase
194	 65.39	+1	229709..230728	+	339	78221422	recA	Gmet_0198	-	recombinase A
195	 61.86	0	230732..231895	+	387	78221423	-	Gmet_0199	-	pilus retraction protein PilT
196	 66.67	+1	231896..232363	+	155	78221424	-	Gmet_0200	-	regulatory protein RecX
197	 64.73	0	232404..235034	+	876	78221425	-	Gmet_0201	-	alanyl-tRNA synthetase
198	 60.00	0	235068..236192	+	374	78221426	-	Gmet_0202	-	response regulator receiver sensor signal transduction histidine kinase
199	 61.89	0	236320..237198	+	292	78221427	-	Gmet_0203	-	acetylglutamate kinase
200	 61.08	0	237249..238448	+	399	78221428	-	Gmet_0204	-	acetylornithine aminotransferase
201	 60.64	0	238445..239356	+	303	78221429	-	Gmet_0205	-	ornithine carbamoyltransferase
202	 61.92	0	239389..240609	+	406	78221430	-	Gmet_0206	-	argininosuccinate synthase
203	 57.43	0	240683..241126	+	147	78221431	-	Gmet_0207	-	NUDIX hydrolase
204	 62.46	0	241137..242300	+	387	78221432	-	Gmet_0208	-	hypothetical protein
205	 60.71	0	242364..243740	+	458	78221433	-	Gmet_0209	-	argininosuccinate lyase
206	 62.82	0	243800..244552	+	250	78221434	-	Gmet_0210	-	fibronectin, type III
207	 60.71	0	244750..245622	+	290	78221435	-	Gmet_0211	-	dihydrodipicolinate synthase
208	 64.79	0	245737..246537	+	266	78221436	-	Gmet_0212	-	dihydrodipicolinate reductase
209	 61.56	0	246743..247975	+	410	78221437	-	Gmet_0213	-	L,L-diaminopimelate aminotransferase
210	 55.56	0	248100..248387	+	95	78221438	-	Gmet_0214	-	hypothetical protein
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.