IslandPathversion 1.0

IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.54 STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1451	 64.27	0	1648909..1649826	+	305	78222679	-	Gmet_1467	-	peptidase M28
1452	 64.74	0	1650083..1651018	+	311	78222680	-	Gmet_1468	-	Alpha/beta hydrolase fold
1453	 60.89	0	1651182..1652999	+	605	78222681	-	Gmet_1469	-	AMP-dependent synthetase and ligase
1454	 53.85	0	1653221..1653532	-	103	78222682	-	Gmet_1470	-	anti-sigma-factor antagonist domain-containing protein
1455	 58.41	0	1653598..1654566	-	322	78222683	-	Gmet_1471	-	hypothetical protein
1456	 55.14	0	1654569..1655783	-	404	78222684	-	Gmet_1472	-	serine phosphatase
1457	 59.81	0	1656147..1656671	+	174	78222685	-	Gmet_1473	-	hypothetical protein
1458	 58.14	0	1657130..1657891	+	253	78222686	-	Gmet_1474	-	hypothetical protein
1459	 60.86	0	1658153..1665037	+	2294	78222687	-	Gmet_1475	-	YD repeat-containing protein
1460	 57.39	0	1665443..1666261	+	272	78222688	-	Gmet_1476	-	hypothetical protein
1461	 61.03	0	1666289..1667371	+	360	78222689	-	Gmet_1477	-	hypothetical protein
1462	 61.99	0	1667368..1668951	+	527	78222690	-	Gmet_1478	-	GH3 auxin-responsive promoter
1463	 63.77	0	1668981..1671152	-	723	78222691	-	Gmet_1479	-	hypothetical protein
1464	 63.06	0	1671170..1673581	-	803	78222692	-	Gmet_1480	-	glycosyl transferase, group 1:PHP-like
1465	 56.99	0	1673675..1674232	-	185	78222693	-	Gmet_1481	-	hypothetical protein
1466	 65.61	+1	1674548..1675591	-	347	78222694	-	Gmet_1482	-	hypothetical protein
1467	 62.96	0	1675609..1676607	-	332	78222695	-	Gmet_1483	-	phosphatidylserine decarboxylase-related protein
1468	 64.45	0	1676604..1679042	-	812	78222696	-	Gmet_1484	-	hypothetical protein
1469	 55.97	0	1679128..1679370	+	80	78222697	-	Gmet_1485	-	hypothetical protein
1470	 62.34	0	1679853..1680845	+	330	78222698	-	Gmet_1486	-	UDP-galactose 4-epimerase
1471	 65.52	+1	1680833..1682662	+	609	78222699	-	Gmet_1487	-	glutamine--fructose-6-phosphate transaminase
1472	 55.52	0	1682727..1683776	+	349	78222700	-	Gmet_1488	-	GDP-mannose 4,6-dehydratase
1473	 53.04	-1	1683769..1684935	+	388	78222701	-	Gmet_1489	-	UDP-N-acetylglucosamine 2-epimerase
1474	 49.72	-1	1685046..1686485	+	479	78222702	-	Gmet_1490	-	polysaccharide biosynthesis protein
1475	 51.91	-1	1686457..1687242	+	261	78222703	-	Gmet_1491	-	hypothetical protein
1476	 49.02	-1	1687254..1688375	+	373	78222704	-	Gmet_1492	-	glycosyl transferase, group 1
1477	 50.87	-1	1688360..1689220	+	286	78222705	-	Gmet_1493	-	glycosyl transferase family protein
1478	 41.59	-2	1689347..1690594	+	415	78222706	-	Gmet_1494	-	hypothetical protein
1479	 45.97	-2	1690548..1691789	+	413	78222707	-	Gmet_1495	-	hypothetical protein
1480	 41.51	-2	1691786..1692910	+	374	78222708	-	Gmet_1496	-	glycosyl transferase, group 1
1481	 45.49	-2	1692922..1693908	+	328	78222709	-	Gmet_1497	-	glycosyl transferase family protein
1482	 38.77	-2	1693917..1695038	+	373	78222710	-	Gmet_1498	-	glycosyl transferase, group 1
1483	 47.80	-2	1695059..1696150	+	363	78222711	-	Gmet_1499	-	glycosyl transferase, group 1
1484	 51.12	-1	1696155..1698380	+	741	78222712	-	Gmet_1500	-	hypothetical protein
1485	 56.64	0	1698392..1700077	+	561	78222713	-	Gmet_1501	-	heparinase II/III-like
1486	 56.06	0	1700231..1701493	+	420	78222714	-	Gmet_1502	-	glycosyl transferase, group 1
1487	 54.46	0	1701614..1703194	+	526	78222715	-	Gmet_1503	-	hypothetical protein
1488	 60.05	0	1703273..1704421	+	382	78222716	-	Gmet_1504	-	UDP-N-acetylglucosamine 2-epimerase
1489	 60.56	0	1704425..1706062	+	545	78222717	-	Gmet_1505	-	glycosyl transferase family protein
1490	 59.04	0	1706070..1708259	+	729	78222718	-	Gmet_1506	-	tetratricopeptide TPR_4
1491	 59.68	0	1708413..1710200	-	595	78222719	-	Gmet_1507	-	Beta-lactamase
1492	 56.80	0	1710379..1711179	-	266	78222720	-	Gmet_1508	-	4Fe-4S ferredoxin, iron-sulfur binding protein
1493	 60.53	0	1711208..1711696	-	162	78222721	-	Gmet_1509	-	YbaK/prolyl-tRNA synthetase associated region
1494	 51.61	-1	1711699..1711884	-	61	78222722	-	Gmet_1510	-	4-oxalocrotonate tautomerase
1495	 59.13	0	1711934..1712782	-	282	78222723	-	Gmet_1511	-	hypothetical protein
1496	 60.65	0	1712792..1713688	-	298	78222724	-	Gmet_1512	-	Beta-lactamase-like
1497	 53.04	-1	1713807..1714547	+	246	78222725	-	Gmet_1513	-	LuxR family transcriptional regulator
1498	 63.94	0	1714667..1715911	-	414	78222726	-	Gmet_1514	-	hypothetical protein
1499	 59.36	0	1715908..1716714	-	268	78222727	-	Gmet_1515	-	hypothetical protein
1500	 56.13	0	1716770..1717177	-	135	78222728	-	Gmet_1516	-	hypothetical protein
1501	 62.25	0	1717197..1719752	-	851	78222729	-	Gmet_1517	-	hypothetical protein
1502	 64.34	0	1719749..1720435	-	228	78222730	-	Gmet_1518	-	ABC transporter-related protein
1503	 63.50	0	1720455..1721906	-	483	78222731	-	Gmet_1519	-	hypothetical protein
1504	 64.26	0	1721896..1722519	-	207	78222732	-	Gmet_1520	-	TetR family transcriptional regulator
1505	 52.06	-1	1723392..1724630	+	412	78222733	-	Gmet_1521	-	L-carnitine dehydratase/bile acid-inducible protein F
1506	 60.16	0	1724614..1725843	+	409	78222734	-	Gmet_1522	-	L-carnitine dehydratase/bile acid-inducible protein F
1507	 60.99	0	1725877..1727109	+	410	78222735	-	Gmet_1523	-	Acyl-CoA dehydrogenase-like
1508	 61.35	0	1727154..1727924	+	256	78222736	-	Gmet_1524	-	short chain enoyl-CoA hydratase
1509	 58.47	0	1727935..1728690	+	251	78222737	-	Gmet_1525	-	electron transfer flavoprotein subunit beta
1510	 62.05	0	1728687..1729574	+	295	78222738	-	Gmet_1526	-	electron transfer flavoprotein subunit alpha
1511	 60.87	0	1729576..1731540	+	654	78222739	-	Gmet_1527	-	hypothetical protein
1512	 51.47	-1	1731592..1732032	+	146	78222740	-	Gmet_1528	-	hypothetical protein
1513	 59.93	0	1732058..1733230	+	390	78222741	-	Gmet_1529	-	thiolase
1514	 57.43	0	1733278..1734024	+	248	78222742	-	Gmet_1530	-	Short-chain dehydrogenase/reductase SDR
1515	 58.40	0	1734053..1734802	+	249	78222743	-	Gmet_1531	-	3-oxoacyl-[acyl-carrier-protein] reductase
1516	 57.04	0	1735067..1735492	+	141	78222744	-	Gmet_1532	-	cyclic nucleotide-binding domain-containing protein
1517	 55.62	0	1735571..1737028	-	485	78222745	-	Gmet_1533	-	fumarate reductase/succinate dehydrogenase flavoprotein-like
1518	 55.56	0	1737123..1737914	-	263	78222746	-	Gmet_1534	-	hypothetical protein
1519	 54.92	0	1737984..1739345	-	453	78222747	-	Gmet_1535	-	aromatic hydrocarbon degradation membrane protein
1520	 52.51	-1	1739416..1741125	-	569	78222748	-	Gmet_1536	-	hypothetical protein
1521	 52.99	-1	1741122..1742006	-	294	78222749	-	Gmet_1537	-	ATPase
1522	 55.17	0	1742148..1742408	-	86	78222750	-	Gmet_1538	-	hypothetical protein
1523	 53.42	-1	1742442..1745030	-	862	78222751	-	Gmet_1539	-	formate C-acetyltransferase glycine radical:pyruvate formate-lyase, PFL
1524	 44.83	-2	1745056..1745229	-	57	78222752	-	Gmet_1540	-	hypothetical protein
1525	 50.33	-1	1745289..1746335	-	348	78222753	-	Gmet_1541	-	glycyl-radical activating protein
1526	 51.16	-1	1746931..1748691	+	586	78222754	-	Gmet_1542	-	Fis family transcriptional regulator
1527	 56.94	0	1748725..1749372	-	215	78222755	-	Gmet_1543	-	YHS
1528	 55.63	0	1749409..1749834	-	141	78222756	-	Gmet_1544	-	hypothetical protein
1529	 57.73	0	1749857..1750762	-	301	78222757	-	Gmet_1545	-	hypothetical protein
1530	 56.11	0	1750836..1751318	-	160	78222758	-	Gmet_1546	-	hypothetical protein
1531	 61.60	0	1751396..1754533	-	1045	78222759	-	Gmet_1547	-	heavy metal efflux pump CzcA
1532	 61.96	0	1754572..1755972	-	466	78222760	-	Gmet_1548	-	secretion protein HlyD
1533	 59.72	0	1756046..1757326	-	426	78222761	-	Gmet_1549	-	Outer membrane efflux protein
1534	 54.81	0	1757586..1757720	-	44	78222762	-	Gmet_1550	-	hypothetical protein
1535	 53.04	-1	1757776..1758186	-	136	78222763	-	Gmet_1551	-	response regulator receiver domain-containing protein
1536	 62.76	0	1758186..1758851	-	221	78222764	-	Gmet_1552	-	ABC transporter-related protein
1537	 62.19	0	1758907..1760067	-	386	78222765	-	Gmet_1553	-	hypothetical protein
1538	 56.55	0	1760092..1760625	-	177	78222766	-	Gmet_1554	-	hypothetical protein
1539	 59.29	0	1760640..1761059	-	139	78222767	-	Gmet_1555	-	heavy metal transport/detoxification protein
1540	 62.24	0	1761085..1761513	-	142	78222768	-	Gmet_1556	-	heavy metal transport/detoxification protein
1541	 35.62	-2	1761597..1761902	-	101	78222769	-	Gmet_1557	-	hypothetical protein
1542	 60.11	0	1762700..1763629	+	309	78222770	-	Gmet_1558	-	cysteine synthase
1543	 60.62	0	1763686..1764264	+	192	78222771	-	Gmet_1559	-	peptidase M23B
1544	 54.30	0	1764329..1765282	+	317	78222772	-	Gmet_1560	-	metal dependent phosphohydrolase
1545	 51.22	-1	1765445..1765813	+	122	78222773	-	Gmet_1561	-	hypothetical protein
1546	 52.02	-1	1766121..1766441	-	106	78222774	-	Gmet_1562	-	hypothetical protein
1547	 48.43	-1	1768107..1768424	-	105	78222775	-	Gmet_1565	-	hypothetical protein
1548	 63.69	0	1768827..1770071	+	414	78222776	-	Gmet_1566	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
1549	 56.81	0	1770084..1770296	+	70	78222777	-	Gmet_1567	-	ThiS, thiamine-biosynthesis
1550	 61.11	0	1770296..1771105	+	269	78222778	-	Gmet_1568	-	UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB
59.54	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.