IslandPathversion 1.0

IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.54 STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1301	 53.25	-1	1475970..1477139	-	389	78222529	-	Gmet_1315	-	transposase IS4
1302	 46.98	-2	1477315..1477761	+	148	78222530	-	Gmet_1316	-	nucleotidyltransferase
1303	 44.12	-2	1477761..1478177	+	138	78222531	-	Gmet_1317	-	hypothetical protein
1304	 53.99	0	1478531..1478806	+	91	78222532	-	Gmet_1319	-	hypothetical protein
1305	 42.68	-2	1478842..1479162	+	106	78222533	-	Gmet_1320	-	DNA polymerase, beta-like region
1306	 45.45	-2	1479367..1479597	+	76	78222534	-	Gmet_1321	-	hypothetical protein
1307	 49.35	-1	1479599..1479829	+	76	78222535	-	Gmet_1322	-	YcfA-like
1308	 53.33	-1	1479851..1480075	+	74	78222536	-	Gmet_1323	-	hypothetical protein
1309	 49.46	-1	1480322..1481251	+	309	78222537	-	Gmet_1324	-	WxcM-like protein
1310	 46.07	-2	1481248..1482354	+	368	78222538	-	Gmet_1325	-	DegT/DnrJ/EryC1/StrS aminotransferase
1311	 40.90	-2	1482351..1483619	+	422	78222539	-	Gmet_1326	-	lipopolysaccharide biosynthesis protein
1312	 29.21	-2	1483641..1484876	+	411	78222540	-	Gmet_1327	-	hypothetical protein
1313	 40.00	-2	1485079..1485963	+	294	78222541	-	Gmet_1328	-	glycosyl transferase family protein
1314	 36.29	-2	1485942..1487294	+	450	78222542	-	Gmet_1329	-	hypothetical protein
1315	 29.31	-2	1487369..1488487	+	372	78222543	-	Gmet_1330	-	hypothetical protein
1316	 32.69	-2	1488513..1489592	+	359	78222544	-	Gmet_1331	-	hypothetical protein
1317	 33.23	-2	1489652..1490641	+	329	78222545	-	Gmet_1332	-	hypothetical protein
1318	 53.59	-1	1490891..1492144	+	417	78222546	-	Gmet_1333	-	IS204/IS1001/IS1096/IS1165 transposase
1319	 38.10	-2	1492253..1493155	+	300	78222547	-	Gmet_1334	-	glycosyl transferase family protein
1320	 51.52	-1	1493177..1494193	+	338	78222548	-	Gmet_1335	-	NAD-dependent epimerase/dehydratase
1321	 54.85	0	1494288..1495472	+	394	78222549	-	Gmet_1336	-	hypothetical protein
1322	 52.58	-1	1495498..1496058	+	186	78222550	-	Gmet_1337	-	sugar transferase
1323	 57.91	0	1496100..1498040	+	646	78222551	-	Gmet_1338	-	polysaccharide biosynthesis protein CapD
1324	 55.19	0	1498144..1498413	+	89	78222552	-	Gmet_1339	-	AbrB family transcriptional regulator
1325	 50.85	-1	1498389..1498799	+	136	78222553	-	Gmet_1340	-	PilT protein-like
1326	 61.79	0	1499016..1500695	+	559	78222554	-	Gmet_1341	-	hypothetical protein
1327	 62.86	0	1500964..1502382	-	472	78222555	-	Gmet_1343	-	Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
1328	 62.68	0	1502588..1503865	+	425	78222556	-	Gmet_1344	-	polysaccharide export protein
1329	 63.56	0	1503856..1505562	+	568	78222557	-	Gmet_1345	-	polysaccharide biosynthesis/export domain-containing protein
1330	 59.45	0	1505575..1506780	+	401	78222558	-	Gmet_1346	-	lipopolysaccharide biosynthesis
1331	 63.36	0	1506811..1507989	+	392	78222559	-	Gmet_1347	-	phosphoesterase, PA-phosphatase related
1332	 62.85	0	1508061..1508741	+	226	78222560	-	Gmet_1348	-	HAD family hydrolase
1333	 66.71	+1	1508874..1511402	+	842	78222561	-	Gmet_1349	-	ATP-dependent helicase HrpB
1334	 62.10	0	1511428..1512150	-	240	78222562	-	Gmet_1350	-	peptidase M23B
1335	 57.52	0	1512484..1512822	+	112	78222563	-	Gmet_1351	-	nitrogen regulatory protein P-II
1336	 59.59	0	1512872..1514284	+	470	78222564	-	Gmet_1352	-	L-glutamine synthetase
1337	 63.48	0	1514414..1515481	+	355	78222565	-	Gmet_1353	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1338	 61.59	0	1515493..1517205	+	570	78222566	-	Gmet_1354	-	prolyl-tRNA synthetase
1339	 60.42	0	1517233..1517952	+	239	78222567	-	Gmet_1355	-	orotidine-5'-phosphate decarboxylase
1340	 60.16	0	1517972..1518724	+	250	78222568	-	Gmet_1356	-	RNA methyltransferase TrmH, group 3
1341	 53.67	-1	1519234..1521018	+	594	78222569	aspS	Gmet_1357	-	aspartyl-tRNA synthetase
1342	 55.56	0	1521033..1521725	+	230	78222570	-	Gmet_1358	-	peptidoglycan-binding LysM
1343	 52.41	-1	1521978..1524200	+	740	78222571	-	Gmet_1359	-	isocitrate dehydrogenase NADP-dependent, monomeric type
1344	 54.09	0	1524251..1525204	+	317	78222572	-	Gmet_1360	-	malate dehydrogenase (NAD)
1345	 47.69	-2	1525401..1525595	+	64	78222573	-	Gmet_1361	-	Iron-sulfur cluster-binding protein
1346	 56.00	0	1525620..1526753	+	377	78222574	-	Gmet_1362	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1347	 55.80	0	1526756..1527574	+	272	78222575	-	Gmet_1363	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1348	 53.55	-1	1527605..1528153	+	182	78222576	-	Gmet_1364	-	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit
1349	 51.50	-1	1528304..1529470	+	388	78222577	-	Gmet_1365	-	metal dependent phosphohydrolase
1350	 54.68	0	1529556..1530506	+	316	78222578	-	Gmet_1366	-	hypothetical protein
1351	 53.39	-1	1530546..1531283	+	245	78222579	-	Gmet_1367	-	hypothetical protein
1352	 55.87	0	1531365..1532003	+	212	78222580	-	Gmet_1368	-	hypothetical protein
1353	 61.45	0	1532028..1532774	+	248	78222581	-	Gmet_1369	-	RNA methyltransferase TrmH, group 1
1354	 60.38	0	1532771..1533088	+	105	78222582	-	Gmet_1370	-	hypothetical protein
1355	 60.17	0	1533085..1533669	+	194	78222583	-	Gmet_1371	-	hypothetical protein
1356	 65.52	+1	1533681..1534553	+	290	78222584	-	Gmet_1372	-	hypothetical protein
1357	 62.74	0	1534575..1535210	+	211	78222585	-	Gmet_1373	-	hypothetical protein
1358	 60.94	0	1535207..1536760	-	517	78222586	-	Gmet_1374	-	EmrB/QacA family drug resistance transporter
1359	 64.89	0	1536773..1537897	-	374	78222587	-	Gmet_1375	-	secretion protein HlyD
1360	 62.92	0	1537900..1539207	-	435	78222588	-	Gmet_1376	-	Outer membrane efflux protein
1361	 63.33	0	1539404..1541563	-	719	78222589	-	Gmet_1377	-	lytic transglycosylase, catalytic
1362	 54.70	0	1541771..1542430	-	219	78222590	-	Gmet_1378	-	response regulator receiver domain-containing protein
1363	 52.13	-1	1542427..1544166	-	579	78222591	-	Gmet_1379	-	histidine kinase
1364	 56.61	0	1544746..1545411	+	221	78222592	-	Gmet_1380	-	DSBA oxidoreductase
1365	 58.62	0	1545438..1546133	+	231	78222593	-	Gmet_1381	-	putative disulfide oxidoreductase
1366	 56.87	0	1546191..1548068	+	625	78222594	-	Gmet_1382	-	arylsulfotransferase
1367	 62.33	0	1548165..1548671	+	168	78222595	-	Gmet_1383	-	thioredoxin family protein
1368	 58.27	0	1548685..1549434	+	249	78222596	-	Gmet_1384	-	cytochrome c biogenesis protein, transmembrane region
1369	 56.50	0	1549548..1550462	+	304	78222597	-	Gmet_1385	-	hypothetical protein
1370	 64.78	0	1550693..1552972	+	759	78222598	-	Gmet_1386	-	3'-5' exoribonuclease, VacB and RNase II:ribonuclease R
1371	 59.58	0	1553226..1554086	+	286	78222599	-	Gmet_1387	-	Sec-independent periplasmic protein translocase
1372	 61.09	0	1554093..1555061	+	322	78222600	-	Gmet_1388	-	riboflavin kinase / FMN adenylyltransferase
1373	 63.40	0	1555058..1556068	+	336	78222601	-	Gmet_1389	-	hypothetical protein
1374	 60.08	0	1556068..1556826	+	252	78222602	-	Gmet_1390	-	SAM-binding motif-containing protein
1375	 60.22	0	1556833..1558692	+	619	78222603	-	Gmet_1391	-	hypothetical protein
1376	 62.72	0	1558696..1559556	+	286	78222604	-	Gmet_1392	-	shikimate dehydrogenase
1377	 60.11	0	1559620..1561326	+	568	78222605	-	Gmet_1393	-	type II secretion system protein E
1378	 61.75	0	1561466..1562563	+	365	78222606	-	Gmet_1394	-	pilus retraction protein PilT
1379	 60.26	0	1562595..1563812	+	405	78222607	-	Gmet_1395	-	type II secretion system protein
1380	 56.87	0	1563822..1565465	+	547	78222608	-	Gmet_1396	-	signal transduction histidine kinase, nitrogen specific, NtrB
1381	 61.22	0	1565515..1566891	+	458	78222609	-	Gmet_1397	-	two component, sigma54 specific, Fis family transcriptional regulator
1382	 53.59	-1	1567009..1568262	+	417	78222610	-	Gmet_1398	-	IS204/IS1001/IS1096/IS1165 transposase
1383	 44.76	-2	1568489..1568698	+	69	78222611	-	Gmet_1399	-	N-terminal methylation
1384	 45.91	-2	1568751..1569092	+	113	78222612	-	Gmet_1400	-	hypothetical protein
1385	 47.67	-2	1569181..1569996	+	271	78222613	-	Gmet_1401	-	hypothetical protein
1386	 48.74	-1	1569993..1570862	+	289	78222614	-	Gmet_1402	-	hypothetical protein
1387	 48.48	-1	1570855..1571745	+	296	78222615	-	Gmet_1403	-	ABC transporter-related protein
1388	 42.89	-2	1571732..1573447	+	571	78222616	-	Gmet_1404	-	hypothetical protein
1389	 47.85	-2	1573431..1574291	+	286	78222617	-	Gmet_1405	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
1390	 38.51	-2	1574281..1575111	+	276	78222618	-	Gmet_1406	-	hypothetical protein
1391	 43.73	-2	1575101..1575802	+	233	78222619	-	Gmet_1407	-	ABC transporter-related protein
1392	 45.54	-2	1575783..1576847	+	354	78222620	-	Gmet_1408	-	glycosyl transferase, group 1
1393	 40.94	-2	1576844..1578118	+	424	78222621	-	Gmet_1409	-	hypothetical protein
1394	 51.99	-1	1578140..1579243	+	367	78222622	-	Gmet_1410	-	glycosyl transferase family protein
1395	 54.80	0	1579409..1581346	+	645	78222623	-	Gmet_1411	-	threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
1396	 50.23	-1	1581445..1581876	+	143	78222624	-	Gmet_1412	-	translation initiation factor 3
1397	 50.00	-1	1581910..1582107	+	65	78222625	rpmI	Gmet_1413	-	50S ribosomal protein L35
1398	 55.37	0	1582260..1582613	+	117	78222626	rplT	Gmet_1414	-	50S ribosomal protein L20
1399	 56.15	0	1582689..1583705	+	338	78222627	-	Gmet_1415	-	phenylalanyl-tRNA synthetase, alpha subunit
1400	 55.32	0	1583776..1586181	+	801	78222628	-	Gmet_1416	-	phenylalanyl-tRNA synthetase beta subunit
59.54	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.