IslandPathversion 1.0

IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.54 STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1245	 60.95	0	1418400..1420061	+	553	78222473	-	Gmet_1259	-	dihydroxy-acid dehydratase
1246	 58.55	0	1420132..1421832	+	566	78222474	-	Gmet_1260	-	acetolactate synthase, large subunit
1247	 55.69	0	1421890..1422381	+	163	78222475	-	Gmet_1261	-	acetolactate synthase 3 regulatory subunit
1248	 57.72	0	1422446..1423462	+	338	78222476	-	Gmet_1262	-	ketol-acid reductoisomerase
1249	 54.64	0	1423613..1424269	+	218	78222477	-	Gmet_1263	-	phosphatidylserine decarboxylase
1250	 55.13	0	1424266..1425045	+	259	78222478	-	Gmet_1264	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1251	 54.78	0	1425537..1427075	+	512	78222479	-	Gmet_1265	-	2-isopropylmalate synthase
1252	 53.23	-1	1427204..1427404	-	66	78222480	-	Gmet_1266	-	cold-shock DNA-binding protein family protein
1253	 51.70	-1	1427611..1428639	-	342	78222481	-	Gmet_1267	-	hypothetical protein
1254	 59.58	0	1428796..1430079	+	427	78222482	-	Gmet_1268	-	3-isopropylmalate dehydratase large subunit
1255	 54.36	0	1430155..1430682	+	175	78222483	-	Gmet_1269	-	3-isopropylmalate dehydratase, small subunit
1256	 56.13	0	1430844..1432361	+	505	78222484	-	Gmet_1270	-	hypothetical protein
1257	 56.90	0	1432367..1433134	+	255	78222485	-	Gmet_1271	-	hypothetical protein
1258	 56.80	0	1433225..1434268	+	347	78222486	-	Gmet_1272	-	virulence factor MCE-like protein-related protein
1259	 57.36	0	1434362..1435231	+	289	78222487	-	Gmet_1273	-	hypothetical protein
1260	 61.76	0	1435253..1436047	-	264	78222488	-	Gmet_1274	-	purine phosphorylase family protein 1
1261	 56.86	0	1436258..1437022	+	254	78222489	-	Gmet_1275	-	3-deoxy-manno-octulosonate cytidylyltransferase
1262	 59.25	0	1437106..1438722	+	538	78222490	-	Gmet_1276	-	CTP synthetase
1263	 60.32	0	1438750..1439568	+	272	78222491	-	Gmet_1277	-	2-dehydro-3-deoxyphosphooctonate aldolase
1264	 60.77	0	1439647..1440612	+	321	78222492	-	Gmet_1278	-	KpsF/GutQ
1265	 54.26	0	1440612..1441127	+	171	78222493	-	Gmet_1279	-	phosphatase kdsC
1266	 53.47	-1	1441483..1442058	+	191	78222494	-	Gmet_1280	-	hypothetical protein
1267	 56.08	0	1442060..1442569	+	169	78222495	-	Gmet_1281	-	OstA-like protein
1268	 55.06	0	1442550..1443290	+	246	78222496	-	Gmet_1282	-	ABC transporter-related protein
1269	 56.13	0	1443385..1444836	+	483	78222497	-	Gmet_1283	-	sigma-54 (RpoN)
1270	 54.21	0	1444956..1445501	+	181	78222498	-	Gmet_1284	-	SSU ribosomal protein S30P / sigma 54 modulation protein
1271	 56.15	0	1445584..1446543	+	319	78222499	-	Gmet_1285	-	HPr kinase/phosphorylase
1272	 58.16	0	1446547..1447404	+	285	78222500	-	Gmet_1286	-	hypothetical protein
1273	 58.52	0	1447409..1447801	+	130	78222501	-	Gmet_1287	-	PTS system fructose subfamily IIA component
1274	 55.06	0	1447823..1448089	+	88	78222502	-	Gmet_1288	-	HPrNtr
1275	 57.44	0	1448070..1449836	+	588	78222503	-	Gmet_1289	-	phosphoenolpyruvate--protein phosphotransferase
1276	 61.28	0	1449945..1451114	+	389	78222504	-	Gmet_1290	-	S-adenosylmethionine synthetase
1277	 60.58	0	1451204..1451926	-	240	78222505	-	Gmet_1291	-	two component transcriptional regulator
1278	 59.16	0	1451923..1452948	-	341	78222506	-	Gmet_1292	-	histidine kinase
1279	 59.76	0	1453010..1454095	+	361	78222507	-	Gmet_1293	-	2-nitropropane dioxygenase, NPD
1280	 62.82	0	1454255..1455685	+	476	78222508	-	Gmet_1294	-	S-adenosyl-L-homocysteine hydrolase
1281	 61.94	0	1455763..1457601	-	612	78222509	-	Gmet_1295	-	peptidase M3B, oligoendopeptidase-related clade 3
1282	 63.74	0	1457674..1457946	+	90	78222510	-	Gmet_1296	-	Smr protein/MutS2-like
1283	 63.57	0	1458039..1460267	-	742	78222511	-	Gmet_1297	-	ribonucleotide-diphosphate reductase subunit alpha
1284	 56.97	0	1460524..1461585	+	353	78222512	-	Gmet_1298	-	diguanylate cyclase with GAF sensor
1285	 62.26	0	1461582..1462919	+	445	78222513	-	Gmet_1299	-	putative lipoprotein
1286	 64.83	0	1462945..1464090	+	381	78222514	-	Gmet_1300	-	cysteine desulphurase-like protein
1287	 55.19	0	1464167..1464436	+	89	78222515	-	Gmet_1301	-	hypothetical protein
1288	 59.70	0	1464504..1465823	+	439	78222516	-	Gmet_1302	-	PhoH-like protein
1289	 65.50	+1	1465823..1466848	+	341	78222517	-	Gmet_1303	-	O-sialoglycoprotein endopeptidase
1290	 61.11	0	1466845..1467672	+	275	78222518	ksgA	Gmet_1304	-	dimethyladenosine transferase
1291	 56.69	0	1467726..1468226	-	166	78222519	-	Gmet_1305	-	MucR family transcriptional regulator
1292	 53.05	-1	1468408..1468620	+	70	78222520	-	Gmet_1306	-	2-oxoglutarate ferredoxin oxidoreductase, delta subunit
1293	 61.95	0	1468719..1469777	+	352	78222521	-	Gmet_1307	-	2-ketoisovalerate ferredoxin reductase
1294	 60.75	0	1469855..1470598	+	247	78222522	-	Gmet_1308	-	thiamine pyrophosphate enzyme, C-terminal TPP-binding
1295	 56.76	0	1470641..1471195	+	184	78222523	-	Gmet_1309	-	pyruvate ferredoxin/flavodoxin oxidoreductase
1296	 55.23	0	1471606..1472829	+	407	78222524	-	Gmet_1310	-	IS204/IS1001/IS1096/IS1165 transposase
1297	 56.69	0	1473046..1474128	+	360	78222525	-	Gmet_1311	-	GDP-mannose 4,6-dehydratase
1298	 55.28	0	1474121..1475086	+	321	78222526	-	Gmet_1312	-	NAD-dependent epimerase/dehydratase
1299	 58.96	0	1475099..1475500	+	133	78222527	-	Gmet_1313	-	hypothetical protein
1300	 52.21	-1	1475490..1475918	+	142	78222528	-	Gmet_1314	-	hypothetical protein
1301	 53.25	-1	1475970..1477139	-	389	78222529	-	Gmet_1315	-	transposase IS4
1302	 46.98	-2	1477315..1477761	+	148	78222530	-	Gmet_1316	-	nucleotidyltransferase
1303	 44.12	-2	1477761..1478177	+	138	78222531	-	Gmet_1317	-	hypothetical protein
1304	 53.99	0	1478531..1478806	+	91	78222532	-	Gmet_1319	-	hypothetical protein
1305	 42.68	-2	1478842..1479162	+	106	78222533	-	Gmet_1320	-	DNA polymerase, beta-like region
1306	 45.45	-2	1479367..1479597	+	76	78222534	-	Gmet_1321	-	hypothetical protein
1307	 49.35	-1	1479599..1479829	+	76	78222535	-	Gmet_1322	-	YcfA-like
1308	 53.33	-1	1479851..1480075	+	74	78222536	-	Gmet_1323	-	hypothetical protein
1309	 49.46	-1	1480322..1481251	+	309	78222537	-	Gmet_1324	-	WxcM-like protein
1310	 46.07	-2	1481248..1482354	+	368	78222538	-	Gmet_1325	-	DegT/DnrJ/EryC1/StrS aminotransferase
1311	 40.90	-2	1482351..1483619	+	422	78222539	-	Gmet_1326	-	lipopolysaccharide biosynthesis protein
1312	 29.21	-2	1483641..1484876	+	411	78222540	-	Gmet_1327	-	hypothetical protein
1313	 40.00	-2	1485079..1485963	+	294	78222541	-	Gmet_1328	-	glycosyl transferase family protein
1314	 36.29	-2	1485942..1487294	+	450	78222542	-	Gmet_1329	-	hypothetical protein
1315	 29.31	-2	1487369..1488487	+	372	78222543	-	Gmet_1330	-	hypothetical protein
1316	 32.69	-2	1488513..1489592	+	359	78222544	-	Gmet_1331	-	hypothetical protein
1317	 33.23	-2	1489652..1490641	+	329	78222545	-	Gmet_1332	-	hypothetical protein
1318	 53.59	-1	1490891..1492144	+	417	78222546	-	Gmet_1333	-	IS204/IS1001/IS1096/IS1165 transposase
1319	 38.10	-2	1492253..1493155	+	300	78222547	-	Gmet_1334	-	glycosyl transferase family protein
1320	 51.52	-1	1493177..1494193	+	338	78222548	-	Gmet_1335	-	NAD-dependent epimerase/dehydratase
1321	 54.85	0	1494288..1495472	+	394	78222549	-	Gmet_1336	-	hypothetical protein
1322	 52.58	-1	1495498..1496058	+	186	78222550	-	Gmet_1337	-	sugar transferase
1323	 57.91	0	1496100..1498040	+	646	78222551	-	Gmet_1338	-	polysaccharide biosynthesis protein CapD
1324	 55.19	0	1498144..1498413	+	89	78222552	-	Gmet_1339	-	AbrB family transcriptional regulator
1325	 50.85	-1	1498389..1498799	+	136	78222553	-	Gmet_1340	-	PilT protein-like
1326	 61.79	0	1499016..1500695	+	559	78222554	-	Gmet_1341	-	hypothetical protein
1327	 62.86	0	1500964..1502382	-	472	78222555	-	Gmet_1343	-	Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
1328	 62.68	0	1502588..1503865	+	425	78222556	-	Gmet_1344	-	polysaccharide export protein
1329	 63.56	0	1503856..1505562	+	568	78222557	-	Gmet_1345	-	polysaccharide biosynthesis/export domain-containing protein
1330	 59.45	0	1505575..1506780	+	401	78222558	-	Gmet_1346	-	lipopolysaccharide biosynthesis
1331	 63.36	0	1506811..1507989	+	392	78222559	-	Gmet_1347	-	phosphoesterase, PA-phosphatase related
1332	 62.85	0	1508061..1508741	+	226	78222560	-	Gmet_1348	-	HAD family hydrolase
1333	 66.71	+1	1508874..1511402	+	842	78222561	-	Gmet_1349	-	ATP-dependent helicase HrpB
1334	 62.10	0	1511428..1512150	-	240	78222562	-	Gmet_1350	-	peptidase M23B
1335	 57.52	0	1512484..1512822	+	112	78222563	-	Gmet_1351	-	nitrogen regulatory protein P-II
1336	 59.59	0	1512872..1514284	+	470	78222564	-	Gmet_1352	-	L-glutamine synthetase
1337	 63.48	0	1514414..1515481	+	355	78222565	-	Gmet_1353	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1338	 61.59	0	1515493..1517205	+	570	78222566	-	Gmet_1354	-	prolyl-tRNA synthetase
1339	 60.42	0	1517233..1517952	+	239	78222567	-	Gmet_1355	-	orotidine-5'-phosphate decarboxylase
1340	 60.16	0	1517972..1518724	+	250	78222568	-	Gmet_1356	-	RNA methyltransferase TrmH, group 3
1341	 53.67	-1	1519234..1521018	+	594	78222569	aspS	Gmet_1357	-	aspartyl-tRNA synthetase
1342	 55.56	0	1521033..1521725	+	230	78222570	-	Gmet_1358	-	peptidoglycan-binding LysM
1343	 52.41	-1	1521978..1524200	+	740	78222571	-	Gmet_1359	-	isocitrate dehydrogenase NADP-dependent, monomeric type
1344	 54.09	0	1524251..1525204	+	317	78222572	-	Gmet_1360	-	malate dehydrogenase (NAD)
59.54	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.