IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
66	 59.91	0	82324..82989	+	221	78221294	-	Gmet_0067	-	ribulose-5-phosphate 3-epimerase
67	 61.88	0	83027..83611	+	194	78221295	-	Gmet_0068	-	NUDIX hydrolase
68	 61.69	0	83666..84610	+	314	78221296	-	Gmet_0069	-	response regulator receiver modulated diguanylate cyclase
69	 65.33	0	84643..85314	-	223	78221297	-	Gmet_0070	-	DNA-3-methyladenine glycosylase III
70	 65.82	+1	85314..88505	-	1063	78221298	-	Gmet_0071	-	glutamate-ammonia ligase adenylyltransferase
71	 66.95	+1	88502..89542	-	346	78221299	-	Gmet_0072	-	translation initiation factor 2B subunit I
72	 65.28	0	89602..91041	-	479	78221300	gatB	Gmet_0073	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
73	 51.88	-1	91103..91474	-	123	78221301	-	Gmet_0074	-	DNA-damage-inducible protein D
74	 67.42	+1	91513..92970	-	485	78221302	-	Gmet_0075	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
75	 64.58	0	93142..93429	-	95	78221303	-	Gmet_0076	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
76	 63.09	0	93589..95574	-	661	78221304	-	Gmet_0077	-	histidine kinase
77	 67.26	+1	95728..97236	-	502	78221305	-	Gmet_0078	-	phospholipase D/transphosphatidylase
78	 45.57	-2	97371..98261	-	296	78221306	-	Gmet_0079	-	hypothetical protein
79	 41.47	-2	98285..98665	-	126	78221307	-	Gmet_0080	-	hypothetical protein
80	 53.59	-1	98843..100096	+	417	78221308	-	Gmet_0081	-	IS204/IS1001/IS1096/IS1165 transposase
81	 40.30	-2	100320..100994	-	224	78221309	-	Gmet_0082	-	hypothetical protein
82	 63.38	0	101105..103597	-	830	78221310	-	Gmet_0083	-	Band 7 protein
83	 65.20	0	103670..105166	-	498	78221311	-	Gmet_0084	-	hypothetical protein
84	 60.92	0	105262..105870	-	202	78221312	-	Gmet_0085	-	protein tyrosine/serine phosphatase
85	 68.64	+1	105926..109312	-	1128	78221313	-	Gmet_0086	-	2-acyl-glycerophospho-ethanolamine acyltransferase
86	 67.36	+1	109309..110313	-	334	78221314	-	Gmet_0087	-	amidohydrolase 2
87	 68.22	+1	110601..112076	+	491	78221315	-	Gmet_0088	-	sigma-54 factor, interaction region
88	 65.46	+1	112218..114446	-	742	78221316	-	Gmet_0089	-	ATP-dependent DNA helicase PcrA
89	 68.82	+1	114582..115091	+	169	78221317	-	Gmet_0090	-	methylated-DNA-(protein)-cysteine S-methyltransferase
90	 66.77	+1	115137..116111	+	324	78221318	-	Gmet_0091	-	lipid A biosynthesis acyltransferase
91	 64.65	0	116108..116800	-	230	78221319	-	Gmet_0092	-	Crp/FNR family transcriptional regulator
92	 51.30	-1	116890..117429	-	179	78221320	-	Gmet_0093	-	hypothetical protein
93	 52.87	-1	118485..119441	+	318	78221321	-	Gmet_0094	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
94	 69.05	+1	119490..120203	-	237	78221322	-	Gmet_0095	-	uracil-DNA glycosylase superfamily protein
95	 69.53	+1	120200..121246	-	348	78221323	-	Gmet_0096	-	peptidase M48, Ste24p
96	 63.27	0	121243..122508	-	421	78221324	-	Gmet_0097	-	hypothetical protein
97	 59.60	0	122523..122720	-	65	78221325	-	Gmet_0098	-	RNA-binding S4
98	 63.48	0	122821..123384	+	187	78221326	-	Gmet_0099	-	translation initiation factor 5A (eIF-5A)
99	 57.94	0	123704..125560	-	618	78221327	-	Gmet_0100	-	cytochrome c family protein
100	 64.21	0	125888..127762	-	624	78221328	-	Gmet_0101	-	radical SAM family protein
101	 60.72	0	127820..128374	-	184	78221329	-	Gmet_0102	-	hypothetical protein
102	 66.88	+1	128528..129958	+	476	78221330	-	Gmet_0103	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
103	 65.30	0	129995..131824	+	609	78221331	-	Gmet_0104	-	glutamine--fructose-6-phosphate transaminase
104	 59.57	0	131835..132299	-	154	78221332	-	Gmet_0105	-	hypothetical protein
105	 60.95	0	132351..133295	-	314	78221333	-	Gmet_0106	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
106	 63.43	0	133443..134615	-	390	78221334	-	Gmet_0107	-	hypothetical protein
107	 62.91	0	134615..135493	-	292	78221335	-	Gmet_0108	-	ATPase
108	 64.14	0	135784..137049	-	421	78221336	-	Gmet_0109	-	peptidase M48, Ste24p
109	 64.47	0	137064..137792	-	242	78221337	-	Gmet_0110	-	nucleic acid binding, OB-fold, tRNA/helicase-type
110	 63.88	0	137916..139028	-	370	78221338	-	Gmet_0111	-	general secretory system II, protein E-like
111	 64.84	0	139091..139855	-	254	78221339	-	Gmet_0112	-	heat shock protein DnaJ-like
112	 57.30	0	140100..140462	+	120	78221340	-	Gmet_0113	-	hypothetical protein
113	 58.71	0	140475..140876	-	133	78221341	-	Gmet_0114	-	hypothetical protein
114	 63.40	0	141014..141871	-	285	78221342	-	Gmet_0115	-	patatin
115	 67.43	+1	141947..142996	-	349	78221343	-	Gmet_0116	-	hydrogenase expression/formation protein HypE
116	 67.95	+1	142993..144084	-	363	78221344	-	Gmet_0117	-	hydrogenase formation HypD protein
117	 60.61	0	144081..144311	-	76	78221345	-	Gmet_0118	-	hydrogenase expression/formation protein (HUPF/HYPC)
118	 68.24	+1	144317..146599	-	760	78221346	-	Gmet_0119	-	hydrogenase maturation protein HypF
119	 63.40	0	146616..147350	-	244	78221347	-	Gmet_0120	-	hydrogenase accessory protein HypB
120	 65.18	0	147559..147894	+	111	78221348	-	Gmet_0121	-	cytochrome c family protein, putative
121	 65.42	+1	147911..149353	+	480	78221349	-	Gmet_0122	-	pyruvate kinase
122	 67.82	+1	149369..150493	+	374	78221350	-	Gmet_0123	-	flavin oxidoreductase/NADH oxidase
123	 68.13	+1	150580..151875	+	431	78221351	-	Gmet_0124	-	radical SAM family protein
124	 69.34	+1	151872..152618	+	248	78221352	-	Gmet_0125	-	hypothetical protein
125	 63.19	0	152699..152986	+	95	78221353	-	Gmet_0126	-	hypothetical protein
126	 64.62	0	152989..153720	+	243	78221354	-	Gmet_0127	-	hypothetical protein
127	 64.00	0	153799..156612	-	937	78221355	-	Gmet_0128	-	excinuclease ABC subunit A
128	 62.54	0	156786..157076	-	96	78221356	-	Gmet_0129	-	hypothetical protein
129	 63.29	0	157342..157992	+	216	78221357	-	Gmet_0130	-	putative prophage repressor
130	 64.49	0	158320..158961	+	213	78221358	-	Gmet_0131	-	hypothetical protein
131	 52.87	-1	159269..160225	+	318	78221359	-	Gmet_0132	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
132	 67.08	+1	160295..162481	-	728	78221360	-	Gmet_0133	-	polyphosphate kinase
133	 59.43	0	162483..163436	-	317	78221361	-	Gmet_0134	-	magnesium/cobalt transporter CorA
134	 67.59	+1	163535..164944	-	469	78221362	-	Gmet_0135	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
135	 65.12	0	165102..165746	+	214	78221363	-	Gmet_0136	-	ribosomal L11 methyltransferase
136	 61.33	0	165784..166383	+	199	78221364	-	Gmet_0137	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
137	 65.39	+1	166488..167897	+	469	78221365	-	Gmet_0138	-	hypothetical protein
138	 66.84	+1	167907..169037	-	376	78221366	-	Gmet_0139	-	hypothetical protein
139	 65.26	0	169144..169854	-	236	78221367	-	Gmet_0140	-	hypothetical protein
140	 65.42	+1	170135..170854	-	239	78221368	-	Gmet_0141	-	cytochrome c assembly protein
141	 63.04	0	171026..172267	+	413	78221369	-	Gmet_0142	-	hypothetical protein
142	 63.94	0	172442..173467	+	341	78221370	-	Gmet_0143	-	putative lipoprotein
143	 66.23	+1	173599..175206	+	535	78221371	-	Gmet_0144	-	thiolase, putative
144	 55.45	0	175224..175526	+	100	78221372	-	Gmet_0145	-	hypothetical protein
145	 57.78	0	175545..175769	+	74	78221373	-	Gmet_0146	-	hypothetical protein
146	 68.32	+1	175822..180354	+	1510	78221374	-	Gmet_0147	-	glutamate synthase (ferredoxin)
147	 62.96	0	180391..180579	+	62	78221375	-	Gmet_0148	-	4Fe-4S ferredoxin, iron-sulfur binding protein
148	 67.08	+1	180613..181827	+	404	78221376	-	Gmet_0149	-	acetate kinase
149	 64.27	0	182924..183340	+	138	78221377	-	Gmet_0152	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
150	 65.66	+1	183479..185854	+	791	78221378	-	Gmet_0153	-	trifunctional NADH dehydrogenase I subunit B/C/D
151	 66.09	+1	185865..186386	+	173	78221379	-	Gmet_0154	-	NADH dehydrogenase subunit E
152	 59.76	0	186383..186715	+	110	78221380	-	Gmet_0155	-	cytochrome c, class I
153	 61.06	0	186775..187113	+	112	78221381	-	Gmet_0156	-	hypothetical protein
154	 68.16	+1	187117..188385	+	422	78221382	-	Gmet_0157	-	respiratory-chain NADH dehydrogenase domain-containing protein
155	 65.96	+1	188385..188954	+	189	78221383	-	Gmet_0158	-	hypothetical protein
156	 68.27	+1	188964..190892	+	642	78221384	-	Gmet_0159	-	NADH dehydrogenase subunit G
157	 51.61	-1	191076..191447	+	123	78221385	-	Gmet_0160	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
158	 64.34	0	191547..192536	+	329	78221386	-	Gmet_0161	-	respiratory-chain NADH dehydrogenase, subunit 1
159	 62.91	0	192666..193091	+	141	78221387	-	Gmet_0162	-	ankyrin
160	 66.31	+1	193125..193679	+	184	78221388	-	Gmet_0163	-	NADH dehydrogenase subunit I
161	 56.31	0	193772..193993	+	73	78221389	-	Gmet_0164	-	hypothetical protein
162	 65.02	0	194113..194598	+	161	78221390	-	Gmet_0165	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
163	 56.84	0	194652..194936	+	94	78221391	-	Gmet_0166	-	hypothetical protein
164	 63.43	0	194952..195260	+	102	78221392	-	Gmet_0167	-	NADH-ubiquinone oxidoreductase, chain 4L
165	 66.61	+1	195257..197134	+	625	78221393	-	Gmet_0168	-	NADH-plastoquinone oxidoreductase, chain 5
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.