version 1.0
Geobacter metallireducens GS-15, complete genome - 1..3997420 3519 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 62 58.33 0 77504..78559 + 351 78221290 - Gmet_0063 - TrkA family potassium uptake protein 63 62.39 0 78552..79322 + 256 78221291 - Gmet_0064 - xylose isomerase-like TIM barrel 64 64.50 0 79368..80801 - 477 78221292 - Gmet_0065 - cardiolipin synthetase 2 65 67.49 +1 80968..82308 + 446 78221293 - Gmet_0066 - Fmu, rRNA SAM-dependent methyltransferase:Nop2p 66 59.91 0 82324..82989 + 221 78221294 - Gmet_0067 - ribulose-5-phosphate 3-epimerase 67 61.88 0 83027..83611 + 194 78221295 - Gmet_0068 - NUDIX hydrolase 68 61.69 0 83666..84610 + 314 78221296 - Gmet_0069 - response regulator receiver modulated diguanylate cyclase 69 65.33 0 84643..85314 - 223 78221297 - Gmet_0070 - DNA-3-methyladenine glycosylase III 70 65.82 +1 85314..88505 - 1063 78221298 - Gmet_0071 - glutamate-ammonia ligase adenylyltransferase 71 66.95 +1 88502..89542 - 346 78221299 - Gmet_0072 - translation initiation factor 2B subunit I 72 65.28 0 89602..91041 - 479 78221300 gatB Gmet_0073 - aspartyl/glutamyl-tRNA amidotransferase subunit B 73 51.88 -1 91103..91474 - 123 78221301 - Gmet_0074 - DNA-damage-inducible protein D 74 67.42 +1 91513..92970 - 485 78221302 - Gmet_0075 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A 75 64.58 0 93142..93429 - 95 78221303 - Gmet_0076 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 76 63.09 0 93589..95574 - 661 78221304 - Gmet_0077 - histidine kinase 77 67.26 +1 95728..97236 - 502 78221305 - Gmet_0078 - phospholipase D/transphosphatidylase 78 45.57 -2 97371..98261 - 296 78221306 - Gmet_0079 - hypothetical protein 79 41.47 -2 98285..98665 - 126 78221307 - Gmet_0080 - hypothetical protein 80 53.59 -1 98843..100096 + 417 78221308 - Gmet_0081 - IS204/IS1001/IS1096/IS1165 transposase 81 40.30 -2 100320..100994 - 224 78221309 - Gmet_0082 - hypothetical protein 82 63.38 0 101105..103597 - 830 78221310 - Gmet_0083 - Band 7 protein 83 65.20 0 103670..105166 - 498 78221311 - Gmet_0084 - hypothetical protein 84 60.92 0 105262..105870 - 202 78221312 - Gmet_0085 - protein tyrosine/serine phosphatase 85 68.64 +1 105926..109312 - 1128 78221313 - Gmet_0086 - 2-acyl-glycerophospho-ethanolamine acyltransferase 86 67.36 +1 109309..110313 - 334 78221314 - Gmet_0087 - amidohydrolase 2 87 68.22 +1 110601..112076 + 491 78221315 - Gmet_0088 - sigma-54 factor, interaction region 88 65.46 +1 112218..114446 - 742 78221316 - Gmet_0089 - ATP-dependent DNA helicase PcrA 89 68.82 +1 114582..115091 + 169 78221317 - Gmet_0090 - methylated-DNA-(protein)-cysteine S-methyltransferase 90 66.77 +1 115137..116111 + 324 78221318 - Gmet_0091 - lipid A biosynthesis acyltransferase 91 64.65 0 116108..116800 - 230 78221319 - Gmet_0092 - Crp/FNR family transcriptional regulator 92 51.30 -1 116890..117429 - 179 78221320 - Gmet_0093 - hypothetical protein 93 52.87 -1 118485..119441 + 318 78221321 - Gmet_0094 - IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase 94 69.05 +1 119490..120203 - 237 78221322 - Gmet_0095 - uracil-DNA glycosylase superfamily protein 95 69.53 +1 120200..121246 - 348 78221323 - Gmet_0096 - peptidase M48, Ste24p 96 63.27 0 121243..122508 - 421 78221324 - Gmet_0097 - hypothetical protein 97 59.60 0 122523..122720 - 65 78221325 - Gmet_0098 - RNA-binding S4 98 63.48 0 122821..123384 + 187 78221326 - Gmet_0099 - translation initiation factor 5A (eIF-5A) 99 57.94 0 123704..125560 - 618 78221327 - Gmet_0100 - cytochrome c family protein 100 64.21 0 125888..127762 - 624 78221328 - Gmet_0101 - radical SAM family protein 101 60.72 0 127820..128374 - 184 78221329 - Gmet_0102 - hypothetical protein 102 66.88 +1 128528..129958 + 476 78221330 - Gmet_0103 - UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase 103 65.30 0 129995..131824 + 609 78221331 - Gmet_0104 - glutamine--fructose-6-phosphate transaminase 104 59.57 0 131835..132299 - 154 78221332 - Gmet_0105 - hypothetical protein 105 60.95 0 132351..133295 - 314 78221333 - Gmet_0106 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 106 63.43 0 133443..134615 - 390 78221334 - Gmet_0107 - hypothetical protein 107 62.91 0 134615..135493 - 292 78221335 - Gmet_0108 - ATPase 108 64.14 0 135784..137049 - 421 78221336 - Gmet_0109 - peptidase M48, Ste24p 109 64.47 0 137064..137792 - 242 78221337 - Gmet_0110 - nucleic acid binding, OB-fold, tRNA/helicase-type 110 63.88 0 137916..139028 - 370 78221338 - Gmet_0111 - general secretory system II, protein E-like 111 64.84 0 139091..139855 - 254 78221339 - Gmet_0112 - heat shock protein DnaJ-like 112 57.30 0 140100..140462 + 120 78221340 - Gmet_0113 - hypothetical protein 113 58.71 0 140475..140876 - 133 78221341 - Gmet_0114 - hypothetical protein 114 63.40 0 141014..141871 - 285 78221342 - Gmet_0115 - patatin 115 67.43 +1 141947..142996 - 349 78221343 - Gmet_0116 - hydrogenase expression/formation protein HypE 116 67.95 +1 142993..144084 - 363 78221344 - Gmet_0117 - hydrogenase formation HypD protein 117 60.61 0 144081..144311 - 76 78221345 - Gmet_0118 - hydrogenase expression/formation protein (HUPF/HYPC) 118 68.24 +1 144317..146599 - 760 78221346 - Gmet_0119 - hydrogenase maturation protein HypF 119 63.40 0 146616..147350 - 244 78221347 - Gmet_0120 - hydrogenase accessory protein HypB 120 65.18 0 147559..147894 + 111 78221348 - Gmet_0121 - cytochrome c family protein, putative 121 65.42 +1 147911..149353 + 480 78221349 - Gmet_0122 - pyruvate kinase 122 67.82 +1 149369..150493 + 374 78221350 - Gmet_0123 - flavin oxidoreductase/NADH oxidase 123 68.13 +1 150580..151875 + 431 78221351 - Gmet_0124 - radical SAM family protein 124 69.34 +1 151872..152618 + 248 78221352 - Gmet_0125 - hypothetical protein 125 63.19 0 152699..152986 + 95 78221353 - Gmet_0126 - hypothetical protein 126 64.62 0 152989..153720 + 243 78221354 - Gmet_0127 - hypothetical protein 127 64.00 0 153799..156612 - 937 78221355 - Gmet_0128 - excinuclease ABC subunit A 128 62.54 0 156786..157076 - 96 78221356 - Gmet_0129 - hypothetical protein 129 63.29 0 157342..157992 + 216 78221357 - Gmet_0130 - putative prophage repressor 130 64.49 0 158320..158961 + 213 78221358 - Gmet_0131 - hypothetical protein 131 52.87 -1 159269..160225 + 318 78221359 - Gmet_0132 - IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase 132 67.08 +1 160295..162481 - 728 78221360 - Gmet_0133 - polyphosphate kinase 133 59.43 0 162483..163436 - 317 78221361 - Gmet_0134 - magnesium/cobalt transporter CorA 134 67.59 +1 163535..164944 - 469 78221362 - Gmet_0135 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit 135 65.12 0 165102..165746 + 214 78221363 - Gmet_0136 - ribosomal L11 methyltransferase 136 61.33 0 165784..166383 + 199 78221364 - Gmet_0137 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 137 65.39 +1 166488..167897 + 469 78221365 - Gmet_0138 - hypothetical protein 138 66.84 +1 167907..169037 - 376 78221366 - Gmet_0139 - hypothetical protein 139 65.26 0 169144..169854 - 236 78221367 - Gmet_0140 - hypothetical protein 140 65.42 +1 170135..170854 - 239 78221368 - Gmet_0141 - cytochrome c assembly protein 141 63.04 0 171026..172267 + 413 78221369 - Gmet_0142 - hypothetical protein 142 63.94 0 172442..173467 + 341 78221370 - Gmet_0143 - putative lipoprotein 143 66.23 +1 173599..175206 + 535 78221371 - Gmet_0144 - thiolase, putative 144 55.45 0 175224..175526 + 100 78221372 - Gmet_0145 - hypothetical protein 145 57.78 0 175545..175769 + 74 78221373 - Gmet_0146 - hypothetical protein 146 68.32 +1 175822..180354 + 1510 78221374 - Gmet_0147 - glutamate synthase (ferredoxin) 147 62.96 0 180391..180579 + 62 78221375 - Gmet_0148 - 4Fe-4S ferredoxin, iron-sulfur binding protein 148 67.08 +1 180613..181827 + 404 78221376 - Gmet_0149 - acetate kinase 149 64.27 0 182924..183340 + 138 78221377 - Gmet_0152 - NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 150 65.66 +1 183479..185854 + 791 78221378 - Gmet_0153 - trifunctional NADH dehydrogenase I subunit B/C/D 151 66.09 +1 185865..186386 + 173 78221379 - Gmet_0154 - NADH dehydrogenase subunit E 152 59.76 0 186383..186715 + 110 78221380 - Gmet_0155 - cytochrome c, class I 153 61.06 0 186775..187113 + 112 78221381 - Gmet_0156 - hypothetical protein 154 68.16 +1 187117..188385 + 422 78221382 - Gmet_0157 - respiratory-chain NADH dehydrogenase domain-containing protein 155 65.96 +1 188385..188954 + 189 78221383 - Gmet_0158 - hypothetical protein 156 68.27 +1 188964..190892 + 642 78221384 - Gmet_0159 - NADH dehydrogenase subunit G 157 51.61 -1 191076..191447 + 123 78221385 - Gmet_0160 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding 158 64.34 0 191547..192536 + 329 78221386 - Gmet_0161 - respiratory-chain NADH dehydrogenase, subunit 1 159 62.91 0 192666..193091 + 141 78221387 - Gmet_0162 - ankyrin 160 66.31 +1 193125..193679 + 184 78221388 - Gmet_0163 - NADH dehydrogenase subunit I 161 56.31 0 193772..193993 + 73 78221389 - Gmet_0164 - hypothetical protein 59.54 MEAN 5.81 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.