IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
814	 49.20	-1	850848..851345	-	165	189423896	-	Glov_0828	-	Rubrerythrin
815	 50.19	0	851692..851952	-	86	189423897	-	Glov_0829	-	hypothetical protein
816	 56.07	0	852016..853620	+	534	189423898	-	Glov_0830	-	Recombinase
817	 56.63	0	853586..854452	+	288	189423899	-	Glov_0831	-	parB-like partition protein
818	 50.67	0	854458..855351	+	297	189423900	-	Glov_0832	-	RepB plasmid partition
819	 44.58	-2	855426..855674	-	82	189423901	-	Glov_0833	-	hypothetical protein
820	 51.98	0	855677..855928	-	83	189423902	-	Glov_0834	-	hypothetical protein
821	 55.47	0	855943..857076	-	377	189423903	-	Glov_0835	-	aminotransferase class V
822	 49.84	0	857196..858110	+	304	189423904	-	Glov_0836	-	transcriptional regulator, LysR family
823	 49.72	0	858128..858658	-	176	189423905	-	Glov_0837	-	GCN5-related N-acetyltransferase
824	 52.54	0	859471..860553	+	360	189423906	-	Glov_0839	-	transposase IS4 family protein
825	 46.30	-1	862092..862577	-	161	189423907	-	Glov_0840	-	hypothetical protein
826	 59.56	0	862616..865360	-	914	189423908	-	Glov_0841	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
827	 52.00	0	865490..866662	-	390	189423909	-	Glov_0842	-	Na+/H+ antiporter NhaA
828	 58.05	0	866713..869694	-	993	189423910	-	Glov_0843	-	type I site-specific deoxyribonuclease, HsdR family
829	 47.37	-1	869696..870856	-	386	189423911	-	Glov_0844	-	restriction endonuclease S subunits-like protein
830	 52.21	0	870849..871256	-	135	189423912	-	Glov_0845	-	hypothetical protein
831	 45.96	-1	871278..872045	-	255	189423913	-	Glov_0846	-	hypothetical protein
832	 56.22	0	872110..873363	+	417	189423914	-	Glov_0847	-	transposase IS204/IS1001/IS1096/IS1165 family protein
833	 48.46	-1	873312..873926	-	204	189423915	-	Glov_0848	-	hypothetical protein
834	 56.66	0	873973..875451	-	492	189423916	-	Glov_0849	-	N-6 DNA methylase
835	 56.61	0	875448..876938	-	496	189423917	-	Glov_0850	-	N-6 DNA methylase
836	 60.58	+1	876979..878193	-	404	189423918	-	Glov_0851	-	filamentation induced by cAMP protein Fic
837	 56.73	0	878543..878884	-	113	189423919	-	Glov_0852	-	hypothetical protein
838	 47.91	-1	878926..879570	-	214	189423920	-	Glov_0853	-	hypothetical protein
839	 50.96	0	879567..880037	-	156	189423921	-	Glov_0854	-	hypothetical protein
840	 57.06	0	880030..880518	-	162	189423922	-	Glov_0855	-	hypothetical protein
841	 57.87	0	880520..881485	-	321	189423923	-	Glov_0856	-	hypothetical protein
842	 52.59	0	881989..882990	-	333	189423924	-	Glov_0857	-	phage replisome organizer
843	 48.09	-1	883380..884111	+	243	189423925	-	Glov_0858	-	transcriptional regulator, XRE family
844	 50.40	0	884232..885866	+	544	189423926	-	Glov_0859	-	Resolvase domain
845	 52.14	0	886173..887597	+	474	189423927	-	Glov_0860	-	cytochrome c, putative
846	 53.68	0	887824..888408	+	194	189423928	-	Glov_0861	-	heterodisulfide reductase subunit
847	 57.22	0	888405..889283	+	292	189423929	-	Glov_0862	-	CoB--CoM heterodisulfide reductase
848	 55.31	0	889294..889707	+	137	189423930	-	Glov_0863	-	response regulator receiver protein
849	 57.86	0	889708..891705	+	665	189423931	-	Glov_0864	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
850	 59.88	+1	891836..892336	+	166	189423932	-	Glov_0865	-	methyl-viologen-reducing hydrogenase delta subunit
851	 55.56	0	892326..893252	+	308	189423933	-	Glov_0866	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
852	 56.52	0	893268..894272	+	334	189423934	-	Glov_0867	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
853	 39.42	-2	894314..894691	+	125	189423935	-	Glov_0868	-	hypothetical protein
854	 56.97	0	894743..895588	+	281	189423936	-	Glov_0869	-	oxidoreductase FAD/NAD(P)-binding domain protein
855	 50.91	0	895676..896170	-	164	189423937	-	Glov_0870	-	protein-disulfide isomerase
856	 57.47	0	896183..897259	-	358	189423938	-	Glov_0871	-	response regulator receiver sensor signal transduction histidine kinase
857	 56.76	0	897261..897977	-	238	189423939	-	Glov_0872	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
858	 62.05	+1	897974..899380	-	468	189423940	-	Glov_0873	-	L-seryl-tRNA(Sec) selenium transferase
859	 54.63	0	899390..900070	-	226	189423941	-	Glov_0874	-	transcriptional regulator, GntR family
860	 54.70	0	900266..901318	+	350	189423942	-	Glov_0875	-	TrkA-N domain protein
861	 55.34	0	901311..902078	+	255	189423943	-	Glov_0876	-	Xylose isomerase domain protein TIM barrel
862	 60.02	+1	902087..903079	+	330	189423944	-	Glov_0877	-	UDP-glucose 4-epimerase
863	 62.58	+1	903199..905841	+	880	189423945	-	Glov_0878	-	CBS domain containing protein
864	 62.12	+1	905896..907083	-	395	189423946	-	Glov_0879	-	major facilitator superfamily MFS_1
865	 52.70	0	907080..907523	-	147	189423947	-	Glov_0880	-	hypothetical protein
866	 61.08	+1	907542..908741	-	399	189423948	-	Glov_0881	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
867	 40.23	-2	909041..910663	-	540	189423949	-	Glov_0882	-	methyl-accepting chemotaxis sensory transducer
868	 46.56	-1	910741..911670	-	309	189423950	-	Glov_0883	-	hypothetical protein
869	 50.95	0	912782..913519	-	245	189423951	-	Glov_0885	-	IstB domain protein ATP-binding protein
870	 52.34	0	913506..915020	-	504	189423952	-	Glov_0886	-	Integrase catalytic region
871	 40.88	-2	915803..916213	-	136	189423953	-	Glov_0887	-	hypothetical protein
872	 50.37	0	916626..918257	+	543	189423954	-	Glov_0888	-	putative sigma54 specific transcriptional regulator
873	 60.07	+1	918320..919942	-	540	189423955	-	Glov_0889	-	methyl-accepting chemotaxis sensory transducer
874	 60.91	+1	920153..921784	+	543	189423956	-	Glov_0890	-	putative sigma54 specific transcriptional regulator
875	 47.92	-1	921998..922093	-	31	189423957	-	Glov_0891	-	hypothetical protein
876	 56.57	0	922163..923143	-	326	189423958	-	Glov_0892	-	molybdenum cofactor biosynthesis protein A
877	 58.72	0	923130..924350	-	406	189423959	-	Glov_0893	-	molybdenum cofactor synthesis domain protein
878	 60.15	+1	924800..926011	+	403	189423960	-	Glov_0894	-	major facilitator superfamily MFS_1
879	 54.81	0	926192..927001	+	269	189423961	-	Glov_0895	-	initiator RepB protein
880	 57.26	0	927442..928494	+	350	189423962	-	Glov_0896	-	Methyltransferase type 11
881	 58.18	0	928531..929355	+	274	189423963	-	Glov_0897	-	MIP family channel protein
882	 46.59	-1	929737..930015	-	92	189423964	-	Glov_0898	-	hypothetical protein
883	 56.32	0	930159..932429	+	756	189423965	-	Glov_0899	-	Formate dehydrogenase
884	 52.38	0	932489..932824	+	111	189423966	-	Glov_0900	-	putative oxidoreductase iron-sulfur subunit
885	 52.96	0	932901..933170	-	89	189423967	-	Glov_0901	-	hypothetical protein
886	 39.30	-2	933326..933526	+	66	189423968	-	Glov_0902	-	hypothetical protein
887	 53.80	0	933781..934884	+	367	189423969	-	Glov_0903	-	hypothetical protein
888	 53.11	0	934914..935717	+	267	189423970	-	Glov_0904	-	N-acetyltransferase
889	 52.57	0	935795..936901	+	368	189423971	-	Glov_0905	-	major facilitator superfamily MFS_1
890	 52.34	0	936981..938495	+	504	189423972	-	Glov_0906	-	Integrase catalytic region
891	 50.95	0	938482..939219	+	245	189423973	-	Glov_0907	-	IstB domain protein ATP-binding protein
892	 53.54	0	939556..939951	+	131	189423974	-	Glov_0908	-	molybdopterin biosynthesis MoaE protein
893	 57.48	0	939975..940562	+	195	189423975	-	Glov_0909	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
894	 54.22	0	940605..940829	-	74	189423976	-	Glov_0910	-	hypothetical protein
895	 61.40	+1	940937..941962	-	341	189423977	-	Glov_0911	-	phospho-2-dehydro-3-deoxyheptonate aldolase
896	 53.03	0	941987..943438	-	483	189423978	-	Glov_0912	-	Aldehyde Dehydrogenase
897	 58.10	0	943658..944089	-	143	189423979	-	Glov_0913	-	MOSC domain containing protein
898	 60.08	+1	944130..944645	-	171	189423980	-	Glov_0914	-	molybdopterin-guanine dinucleotide biosynthesis protein B
899	 49.27	-1	944768..945727	-	319	189423981	-	Glov_0915	-	hypothetical protein
900	 54.68	0	945900..946241	-	113	189423982	-	Glov_0916	-	zinc finger CDGSH-type domain protein
901	 58.88	0	946431..948137	+	568	189423983	-	Glov_0917	-	sigma54 specific transcriptional regulator, Fis family
902	 58.43	0	948442..949230	+	262	189423984	-	Glov_0918	-	hypothetical protein
903	 59.67	0	949274..950230	+	318	189423985	-	Glov_0919	-	protein of unknown function DUF169
904	 57.63	0	950258..950755	+	165	189423986	-	Glov_0920	-	GCN5-related N-acetyltransferase
905	 60.27	+1	950752..951564	+	270	189423987	-	Glov_0921	-	beta-lactamase domain protein
906	 62.07	+1	951561..952148	+	195	189423988	-	Glov_0922	-	flavin reductase domain protein FMN-binding
907	 61.70	+1	952179..955298	+	1039	189423989	-	Glov_0923	-	Methyltransferase type 11
908	 51.00	0	955447..955797	+	116	189423990	-	Glov_0924	-	hypothetical protein
909	 59.74	+1	955824..956603	+	259	189423991	-	Glov_0925	-	hypothetical protein
910	 51.36	0	956802..957095	+	97	189423992	-	Glov_0926	-	hypothetical protein
911	 63.25	+1	957161..957658	-	165	189423993	-	Glov_0927	-	molybdenum cofactor synthesis domain protein
912	 58.80	0	957655..958137	-	160	189423994	-	Glov_0928	-	molybdenum cofactor biosynthesis protein C
913	 64.44	+1	958173..958802	-	209	189423995	-	Glov_0929	-	Lysine exporter protein (LYSE/YGGA)
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.