IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
638	 55.19	0	657520..658242	-	240	189423720	-	Glov_0651	-	hypothetical protein
639	 56.18	0	658253..658729	-	158	189423721	-	Glov_0652	-	MaoC domain protein dehydratase
640	 56.55	0	658811..659245	+	144	189423722	-	Glov_0653	-	7-cyano-7-deazaguanine reductase
641	 51.83	0	659294..659839	-	181	189423723	-	Glov_0654	-	hypothetical protein
642	 55.91	0	659857..660618	-	253	189423724	-	Glov_0655	-	Integral membrane protein TerC
643	 55.66	0	660766..661083	-	105	189423725	-	Glov_0656	-	protein of unknown function UPF0153
644	 62.71	+1	661220..662053	-	277	189423726	-	Glov_0657	-	protein of unknown function DUF191
645	 60.22	+1	662099..662563	-	154	189423727	-	Glov_0658	-	protein of unknown function DUF188
646	 61.18	+1	662560..663690	-	376	189423728	-	Glov_0659	-	hypothetical protein
647	 59.09	0	663909..665927	+	672	189423729	-	Glov_0660	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
648	 58.92	0	665990..668416	+	808	189423730	-	Glov_0661	-	molybdopterin oxidoreductase
649	 57.51	0	668494..670131	+	545	189423731	-	Glov_0662	-	Radical SAM domain protein
650	 56.83	0	670128..670310	+	60	189423732	-	Glov_0663	-	hypothetical protein
651	 56.44	0	670443..671606	-	387	189423733	-	Glov_0664	-	cell division protein FtsZ
652	 55.42	0	671690..672925	-	411	189423734	-	Glov_0665	-	cell division protein FtsA
653	 55.43	0	672961..673788	-	275	189423735	-	Glov_0666	-	Polypeptide-transport-associated domain protein FtsQ-type
654	 57.75	0	673788..674729	-	313	189423736	-	Glov_0667	-	D-alanine/D-alanine ligase
655	 57.10	0	674726..675634	-	302	189423737	-	Glov_0668	-	UDP-N-acetylenolpyruvoylglucosamine reductase
656	 58.21	0	675634..677004	-	456	189423738	-	Glov_0669	-	UDP-N-acetylmuramate/alanine ligase
657	 58.29	0	676989..678134	-	381	189423739	-	Glov_0670	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
658	 56.54	0	678131..679276	-	381	189423740	-	Glov_0671	-	cell division protein FtsW
659	 57.05	0	679280..680620	-	446	189423741	-	Glov_0672	-	UDP-N-acetylmuramoylalanine/D-glutamate ligase
660	 54.87	0	680622..681698	-	358	189423742	-	Glov_0673	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
661	 58.89	0	681703..683091	-	462	189423743	-	Glov_0674	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
662	 59.89	+1	683093..684613	-	506	189423744	-	Glov_0675	-	UDP-N-acetylmuramyl-tripeptide synthetase
663	 58.37	0	684623..686611	-	662	189423745	-	Glov_0676	-	Peptidoglycan glycosyltransferase
664	 53.10	0	686643..686981	-	112	189423746	-	Glov_0677	-	Septum formation initiator
665	 58.49	0	687002..687943	-	313	189423747	-	Glov_0678	-	S-adenosyl-methyltransferase MraW
666	 58.33	0	687944..688423	-	159	189423748	-	Glov_0679	-	protein of unknown function UPF0040
667	 52.61	0	688947..690902	+	651	189423749	-	Glov_0680	-	diguanylate cyclase/phosphodiesterase with GAF sensor
668	 55.56	0	690958..691299	-	113	189423750	-	Glov_0681	-	hypothetical protein
669	 53.44	0	691884..692609	-	241	189423751	-	Glov_0682	-	protein of unknown function DUF164
670	 55.53	0	692624..693790	-	388	189423752	-	Glov_0683	-	protein of unknown function DUF34
671	 55.67	0	694018..694581	-	187	189423753	-	Glov_0684	-	translation elongation factor P
672	 56.50	0	694700..695122	-	140	189423754	-	Glov_0685	-	Ankyrin
673	 54.34	0	695628..696065	+	145	189423755	-	Glov_0686	-	hypothetical protein
674	 54.98	0	696073..696876	-	267	189423756	-	Glov_0687	-	UspA domain protein
675	 56.98	0	696918..697898	-	326	189423757	-	Glov_0688	-	Porphobilinogen synthase
676	 54.13	0	698094..699425	+	443	189423758	-	Glov_0689	-	OmpA/MotB domain protein
677	 60.24	+1	699520..699768	-	82	189423759	-	Glov_0690	-	hypothetical protein
678	 56.50	0	699884..702862	-	992	189423760	-	Glov_0691	-	Glu/Leu/Phe/Val dehydrogenase
679	 59.16	0	703019..703564	+	181	189423761	-	Glov_0692	-	cob(I)alamin adenosyltransferase
680	 50.63	0	703672..704070	+	132	189423762	-	Glov_0693	-	hypothetical protein
681	 54.81	0	704073..704384	+	103	189423763	-	Glov_0694	-	hypothetical protein
682	 54.27	0	704498..705997	+	499	189423764	-	Glov_0695	-	Lytic transglycosylase catalytic
683	 51.49	0	706038..706775	+	245	189423765	-	Glov_0696	-	hypothetical protein
684	 53.60	0	706772..707521	+	249	189423766	-	Glov_0697	-	response regulator receiver protein
685	 54.03	0	707640..708707	-	355	189423767	-	Glov_0698	-	PpiC-type peptidyl-prolyl cis-trans isomerase
686	 53.49	0	708771..709688	-	305	189423768	-	Glov_0699	-	PpiC-type peptidyl-prolyl cis-trans isomerase
687	 60.83	+1	709791..713288	-	1165	189423769	-	Glov_0700	-	transcription-repair coupling factor
688	 55.44	0	713309..713878	-	189	189423770	-	Glov_0701	-	hypothetical protein
689	 60.01	+1	714027..715409	+	460	189423771	-	Glov_0702	-	UDP-N-acetylglucosamine pyrophosphorylase
690	 57.86	0	715402..717513	+	703	189423772	-	Glov_0703	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
691	 59.08	0	717517..720336	+	939	189423773	-	Glov_0704	-	excinuclease ABC, A subunit
692	 52.56	0	720351..720506	+	51	189423774	-	Glov_0705	-	hypothetical protein
693	 56.17	0	720503..721483	-	326	189423775	-	Glov_0706	-	Auxin Efflux Carrier
694	 60.12	+1	721496..722503	-	335	189423776	-	Glov_0707	-	Auxin Efflux Carrier
695	 58.65	0	722509..723456	-	315	189423777	-	Glov_0708	-	protein of unknown function DUF534
696	 57.60	0	723453..725603	-	716	189423778	-	Glov_0709	-	protein serine/threonine phosphatase
697	 59.78	+1	725711..726814	-	367	189423779	-	Glov_0710	-	Mandelate racemase/muconate lactonizing protein
698	 56.92	0	727003..727443	-	146	189423780	-	Glov_0711	-	hypothetical protein
699	 61.63	+1	727577..728668	-	363	189423781	-	Glov_0712	-	iron-containing alcohol dehydrogenase
700	 57.05	0	728720..729811	-	363	189423782	-	Glov_0713	-	ABC transporter related
701	 56.61	0	729808..732075	-	755	189423783	-	Glov_0714	-	polar amino acid ABC transporter, inner membrane subunit
702	 61.36	+1	732072..732203	-	43	189423784	-	Glov_0715	-	hypothetical protein
703	 60.04	+1	732213..734687	-	824	189423785	-	Glov_0716	-	Extracellular ligand-binding receptor
704	 60.69	+1	734760..735947	-	395	189423786	-	Glov_0717	-	glycoside hydrolase family 3 domain protein
705	 57.84	0	736155..736868	-	237	189423787	-	Glov_0718	-	Acetolactate decarboxylase
706	 57.85	0	736906..738084	-	392	189423788	-	Glov_0719	-	Beta-N-acetylhexosaminidase
707	 54.86	0	738120..738500	-	126	189423789	-	Glov_0720	-	hypothetical protein
708	 48.07	-1	738882..739322	-	146	189423790	-	Glov_0721	-	hypothetical protein
709	 57.12	0	739548..740312	-	254	189423791	-	Glov_0722	-	hypothetical protein
710	 52.88	0	740315..740713	-	132	189423792	-	Glov_0723	-	hypothetical protein
711	 50.44	0	741013..741240	-	75	189423793	-	Glov_0724	-	hypothetical protein
712	 52.59	0	741260..741607	-	115	189423794	-	Glov_0725	-	hypothetical protein
713	 52.74	0	741737..741973	-	78	189423795	-	Glov_0726	-	protein of unknown function DUF1566
714	 49.33	-1	742022..742171	-	49	189423796	-	Glov_0727	-	hypothetical protein
715	 46.54	-1	742333..742809	-	158	189423797	-	Glov_0728	-	Cyanovirin-N domain protein
716	 50.00	0	742869..743312	-	147	189423798	-	Glov_0729	-	hypothetical protein
717	 51.11	0	744066..744425	-	119	189423799	-	Glov_0730	-	hypothetical protein
718	 50.59	0	744410..744832	-	140	189423800	-	Glov_0731	-	hypothetical protein
719	 64.86	+2	744981..746144	-	387	189423801	-	Glov_0732	-	protein of unknown function DUF819
720	 59.01	0	746153..746557	-	134	189423802	-	Glov_0733	-	hypothetical protein
721	 49.45	-1	746688..747053	-	121	189423803	-	Glov_0734	-	hypothetical protein
722	 59.15	0	747173..748249	-	358	189423804	-	Glov_0735	-	hypothetical protein
723	 45.57	-1	748301..748684	-	127	189423805	-	Glov_0736	-	hypothetical protein
724	 60.47	+1	748822..750048	-	408	189423806	-	Glov_0737	-	putative sigma54 specific transcriptional regulator
725	 50.90	0	750070..750348	-	92	189423807	-	Glov_0738	-	hypothetical protein
726	 56.65	0	750404..751951	-	515	189423808	-	Glov_0739	-	polar amino acid ABC transporter, inner membrane subunit
727	 53.31	0	752033..752818	-	261	189423809	-	Glov_0740	-	ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein
728	 57.04	0	752905..754296	-	463	189423810	-	Glov_0741	-	hypothetical protein
729	 49.30	-1	754340..754696	-	118	189423811	-	Glov_0742	-	hypothetical protein
730	 61.46	+1	754898..755089	-	63	189423812	-	Glov_0743	-	hypothetical protein
731	 44.86	-1	755265..755663	-	132	189423813	-	Glov_0744	-	hypothetical protein
732	 49.43	-1	755706..756146	-	146	189423814	-	Glov_0745	-	hypothetical protein
733	 58.99	0	756310..757533	-	407	189423815	-	Glov_0746	-	protein of unknown function DUF214
734	 57.81	0	757530..758195	-	221	189423816	-	Glov_0747	-	ABC transporter related
735	 55.43	0	758197..760020	-	607	189423817	-	Glov_0748	-	putative PAS/PAC sensor protein
736	 57.03	0	760032..761504	-	490	189423818	-	Glov_0749	-	outer membrane efflux protein
737	 53.52	0	761501..761926	-	141	189423819	-	Glov_0750	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.