IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 58.43	0	394784..395281	-	165	189423483	-	Glov_0412	-	peptidylprolyl isomerase FKBP-type
402	 59.80	+1	395338..395643	-	101	189423484	-	Glov_0413	-	protein of unknown function DUF167
403	 58.89	0	395633..396082	-	149	189423485	-	Glov_0414	-	DivIVA family protein
404	 54.01	0	396089..396412	-	107	189423486	-	Glov_0415	-	protein of unknown function YGGT
405	 60.61	+1	396573..397364	+	263	189423487	-	Glov_0416	-	Inositol-phosphate phosphatase
406	 56.85	0	397361..397696	+	111	189423488	-	Glov_0417	-	hypothetical protein
407	 56.91	0	397774..398757	+	327	189423489	-	Glov_0418	-	3-oxoacyl-(acyl-carrier-protein) synthase III
408	 59.38	0	398904..399452	+	182	189423490	-	Glov_0419	-	response regulator receiver and ANTAR domain protein
409	 59.27	0	399445..400350	-	301	189423491	-	Glov_0420	-	ADP-ribosyl-(dinitrogen reductase) hydrolase
410	 56.92	0	400380..400820	+	146	189423492	-	Glov_0421	-	hypothetical protein
411	 59.85	+1	400984..401805	+	273	189423493	-	Glov_0422	-	Radical SAM domain protein
412	 59.93	+1	401858..402658	+	266	189423494	-	Glov_0423	-	GCN5-related N-acetyltransferase
413	 59.32	0	402675..403817	+	380	189423495	-	Glov_0424	-	homocitrate synthase
414	 56.41	0	403957..404190	+	77	189423496	-	Glov_0425	-	hypothetical protein
415	 52.92	0	404346..404636	+	96	189423497	-	Glov_0426	-	hypothetical protein
416	 57.87	0	404649..405080	+	143	189423498	-	Glov_0427	-	nitrogenase-associated protein
417	 51.95	0	405274..406401	+	375	189423499	-	Glov_0428	-	hypothetical protein
418	 51.52	0	406437..406733	-	98	189423500	-	Glov_0429	-	hypothetical protein
419	 57.58	0	406730..407158	-	142	189423501	-	Glov_0430	-	peptidylprolyl isomerase FKBP-type
420	 61.11	+1	407155..407478	-	107	189423502	-	Glov_0431	-	hypothetical protein
421	 57.72	0	407613..408182	+	189	189423503	-	Glov_0432	-	hypothetical protein
422	 56.93	0	408267..408605	-	112	189423504	-	Glov_0433	-	alkylphosphonate utilization operon protein PhnA
423	 64.81	+2	408660..409844	-	394	189423505	-	Glov_0434	-	phosphoribosylglycinamide formyltransferase 2
424	 51.21	0	410145..410681	-	178	189423506	-	Glov_0435	-	Peptidase M23
425	 43.21	-2	410706..411434	-	242	189423507	-	Glov_0436	-	SMC domain protein
426	 48.15	-1	411458..411916	-	152	189423508	-	Glov_0437	-	hypothetical protein
427	 40.92	-2	411993..412625	-	210	189423509	-	Glov_0438	-	hypothetical protein
428	 53.60	0	412752..413861	+	369	189423510	-	Glov_0439	-	transposase IS116/IS110/IS902 family protein
429	 52.54	0	414219..415301	+	360	189423511	-	Glov_0440	-	transposase IS4 family protein
430	 50.85	0	415896..416363	-	155	189423512	-	Glov_0441	-	hypothetical protein
431	 57.77	0	416703..417365	+	220	189423513	-	Glov_0442	-	Methyltransferase type 11
432	 56.86	0	417376..417732	+	118	189423514	-	Glov_0443	-	hypothetical protein
433	 57.43	0	417729..418811	+	360	189423515	-	Glov_0444	-	ABC-type Fe3+ transport system periplasmic component-like protein
434	 58.81	0	418802..419488	+	228	189423516	-	Glov_0445	-	cobalamin synthesis protein P47K
435	 60.78	+1	419494..420495	+	333	189423517	-	Glov_0446	-	ABC transporter related
436	 55.51	0	420782..421588	+	268	189423518	-	Glov_0447	-	transcriptional regulator, ModE family
437	 57.71	0	421627..422631	+	334	189423519	-	Glov_0448	-	modD protein
438	 52.91	0	422659..423414	+	251	189423520	-	Glov_0449	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
439	 52.60	0	423435..424202	+	255	189423521	-	Glov_0450	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
440	 61.36	+1	424205..424882	+	225	189423522	-	Glov_0451	-	molybdate ABC transporter, inner membrane subunit
441	 59.07	0	424889..425941	+	350	189423523	-	Glov_0452	-	molybdate ABC transporter, ATPase subunit
442	 56.90	0	425944..426987	-	347	189423524	-	Glov_0453	-	Ion transport 2 domain protein
443	 61.66	+1	426998..427576	-	192	189423525	-	Glov_0454	-	nuclease (SNase domain protein)
444	 60.48	+1	427684..428847	+	387	189423526	-	Glov_0455	-	aminotransferase class I and II
445	 58.87	0	428894..429496	+	200	189423527	-	Glov_0456	-	small GTP-binding protein
446	 58.80	0	429493..430293	+	266	189423528	-	Glov_0457	-	protein of unknown function DUF198
447	 62.55	+1	430290..431018	+	242	189423529	-	Glov_0458	-	purine or other phosphorylase family 1
448	 59.42	0	431025..431576	-	183	189423530	-	Glov_0459	-	hypothetical protein
449	 58.66	0	431605..432291	-	228	189423531	-	Glov_0460	-	alanine racemase domain protein
450	 59.82	+1	432295..434004	-	569	189423532	-	Glov_0461	-	methyl-accepting chemotaxis sensory transducer
451	 59.50	0	434004..434603	-	199	189423533	-	Glov_0462	-	maf protein
452	 49.10	-1	434590..434868	-	92	189423534	-	Glov_0463	-	hypothetical protein
453	 57.10	0	434858..436258	-	466	189423535	-	Glov_0464	-	FAD linked oxidase domain protein
454	 55.04	0	436363..437772	-	469	189423536	-	Glov_0465	-	PAS/PAC sensor signal transduction histidine kinase
455	 58.35	0	437756..438910	-	384	189423537	-	Glov_0466	-	iron-containing alcohol dehydrogenase
456	 56.60	0	439103..441406	+	767	189423538	-	Glov_0467	-	transcriptional regulator, Fis family
457	 51.37	0	441619..441801	+	60	189423539	-	Glov_0468	-	hypothetical protein
458	 54.17	0	441897..443408	-	503	189423540	-	Glov_0469	-	ribonuclease, Rne/Rng family
459	 57.58	0	443445..445931	-	828	189423541	-	Glov_0470	-	Radical SAM domain protein
460	 57.95	0	446215..447705	-	496	189423542	-	Glov_0471	-	ammonium transporter
461	 51.62	0	447748..448086	-	112	189423543	-	Glov_0472	-	nitrogen regulatory protein P-II
462	 53.67	0	448440..448739	+	99	189423544	-	Glov_0473	-	Rieske (2Fe-2S) domain protein
463	 55.79	0	448726..450177	+	483	189423545	-	Glov_0474	-	phospholipase D/Transphosphatidylase
464	 51.59	0	450276..450872	+	198	189423546	-	Glov_0475	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
465	 57.49	0	450983..453106	+	707	189423547	-	Glov_0476	-	DNA polymerase B, exonuclease
466	 52.70	0	453160..453381	-	73	189423548	-	Glov_0477	-	hypothetical protein
467	 55.78	0	453627..454508	-	293	189423549	-	Glov_0478	-	glucose-1-phosphate thymidylyltransferase
468	 55.33	0	454533..455546	-	337	189423550	-	Glov_0479	-	NAD-dependent epimerase/dehydratase
469	 59.62	0	455552..456772	-	406	189423551	-	Glov_0480	-	threonine dehydratase
470	 59.34	0	456776..458986	-	736	189423552	-	Glov_0481	-	UvrD/REP helicase
471	 59.63	0	459018..459998	-	326	189423553	-	Glov_0482	-	pseudouridine synthase, RluA family
472	 51.52	0	460077..460340	-	87	189423554	-	Glov_0483	-	hypothetical protein
473	 60.33	+1	460420..461586	-	388	189423555	-	Glov_0484	-	2-alkenal reductase
474	 54.21	0	461720..462313	+	197	189423556	-	Glov_0485	-	transcriptional regulator, XRE family
475	 57.95	0	462374..463027	-	217	189423557	-	Glov_0486	-	ThiJ/PfpI domain protein
476	 58.39	0	463024..463941	-	305	189423558	-	Glov_0487	-	NAD-dependent epimerase/dehydratase
477	 60.97	+1	464009..464587	+	192	189423559	-	Glov_0488	-	hypothetical protein
478	 58.99	0	464661..466979	+	772	189423560	-	Glov_0489	-	ATP-dependent protease La
479	 57.88	0	466982..467755	+	257	189423561	-	Glov_0490	-	protein of unknown function DUF140
480	 51.37	0	467772..468320	+	182	189423562	-	Glov_0491	-	hypothetical protein
481	 51.39	0	468310..468525	+	71	189423563	-	Glov_0492	-	hypothetical protein
482	 56.48	0	468529..469284	+	251	189423564	-	Glov_0493	-	ABC transporter related
483	 54.89	0	469290..469790	+	166	189423565	-	Glov_0494	-	hypothetical protein
484	 57.25	0	469820..470902	+	360	189423566	-	Glov_0495	-	Mammalian cell entry related domain protein
485	 60.23	+1	470919..472424	+	501	189423567	-	Glov_0496	-	peptidase M16 domain protein
486	 57.56	0	472421..473836	+	471	189423568	-	Glov_0497	-	peptidase M16 domain protein
487	 54.61	0	473944..474225	+	93	189423569	-	Glov_0498	-	anti-sigma-28 factor, FlgM
488	 53.68	0	474287..475618	+	443	189423570	-	Glov_0499	-	hypothetical protein
489	 55.33	0	475651..476823	+	390	189423571	-	Glov_0500	-	hypothetical protein
490	 62.09	+1	476820..477650	-	276	189423572	-	Glov_0501	-	Uroporphyrinogen-III synthase
491	 60.49	+1	477622..478560	-	312	189423573	-	Glov_0502	-	porphobilinogen deaminase
492	 59.54	0	478585..479889	-	434	189423574	-	Glov_0503	-	glutamyl-tRNA reductase
493	 58.21	0	479901..480716	-	271	189423575	-	Glov_0504	-	cytochrome c-type biogenesis protein CcsB
494	 56.97	0	480930..481259	+	109	189423576	-	Glov_0505	-	thioredoxin
495	 57.58	0	481261..481788	+	175	189423577	-	Glov_0506	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
496	 57.88	0	481819..482694	-	291	189423578	-	Glov_0507	-	UTP-glucose-1-phosphate uridylyltransferase
497	 59.77	+1	482698..483552	-	284	189423579	-	Glov_0508	-	Methenyltetrahydrofolate cyclohydrolase
498	 56.76	0	483781..484002	-	73	189423580	-	Glov_0509	-	regulatory protein, FmdB family
499	 62.79	+1	484055..484777	-	240	189423581	-	Glov_0510	-	Smr protein/MutS2
500	 61.00	+1	484788..486005	-	405	189423582	-	Glov_0511	-	protein of unknown function DUF401
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.