IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3507	 60.54	+1	3814902..3816125	+	407	189426589	-	Glov_3545	-	FMN-dependent alpha-hydroxy acid dehydrogenase
3508	 58.51	0	3816153..3817133	+	326	189426590	-	Glov_3546	-	ABC-type phosphate transport system periplasmic component-like protein
3509	 63.08	+1	3817152..3817346	+	64	189426591	-	Glov_3547	-	twin-arginine translocation protein, TatA/E family subunit
3510	 57.36	0	3817416..3818081	-	221	189426592	-	Glov_3548	-	outer membrane chaperone Skp (OmpH)
3511	 58.54	0	3818160..3819341	-	393	189426593	-	Glov_3549	-	methyl-accepting chemotaxis sensory transducer
3512	 60.60	+1	3819406..3821415	-	669	189426594	-	Glov_3550	-	Nitrate reductase
3513	 57.68	0	3821556..3822545	+	329	189426595	-	Glov_3551	-	ADP-L-glycero-D-manno-heptose-6-epimerase
3514	 55.66	0	3822572..3823198	+	208	189426596	-	Glov_3552	-	hypothetical protein
3515	 61.60	+1	3823285..3824232	-	315	189426597	-	Glov_3553	-	cobalamin biosynthesis protein CobD
3516	 60.22	+1	3824229..3826820	-	863	189426598	-	Glov_3554	-	cobyric acid synthase CobQ
3517	 51.74	0	3826846..3827823	-	325	189426599	-	Glov_3555	-	response regulator receiver modulated GAF sensor protein
3518	 57.59	0	3828402..3830306	+	634	189426600	-	Glov_3556	-	TonB-dependent receptor plug
3519	 60.29	+1	3830310..3831140	+	276	189426601	-	Glov_3557	-	periplasmic binding protein
3520	 65.93	+2	3831152..3832102	+	316	189426602	-	Glov_3558	-	transport system permease protein
3521	 60.77	+1	3832099..3832827	+	242	189426603	-	Glov_3559	-	ABC transporter related
3522	 47.24	-1	3832898..3833494	-	198	189426604	-	Glov_3560	-	hypothetical protein
3523	 45.77	-1	3833649..3834251	-	200	189426605	-	Glov_3561	-	hypothetical protein
3524	 54.71	0	3834414..3834848	-	144	189426606	-	Glov_3562	-	hypothetical protein
3525	 57.78	0	3835026..3835565	+	179	189426607	-	Glov_3563	-	YaeQ family protein
3526	 55.28	0	3835572..3835817	+	81	189426608	-	Glov_3564	-	protein of unknown function UPF0270
3527	 61.15	+1	3835845..3837203	-	452	189426609	-	Glov_3565	-	MATE efflux family protein
3528	 59.09	0	3837303..3839981	-	892	189426610	-	Glov_3566	-	pyruvate, phosphate dikinase
3529	 60.91	+1	3840300..3842210	-	636	189426611	-	Glov_3567	-	selenocysteine-specific translation elongation factor
3530	 55.25	0	3842207..3842530	-	107	189426612	-	Glov_3568	-	HNH endonuclease
3531	 62.01	+1	3842533..3843240	-	235	189426613	-	Glov_3569	-	two component transcriptional regulator, winged helix family
3532	 58.37	0	3843233..3844462	-	409	189426614	-	Glov_3570	-	protein of unknown function DUF214
3533	 61.21	+1	3844459..3844989	-	176	189426615	-	Glov_3571	-	Appr-1-p processing domain protein
3534	 52.91	0	3845017..3845394	-	125	189426616	-	Glov_3572	-	PilT protein domain protein
3535	 54.32	0	3845384..3845626	-	80	189426617	-	Glov_3573	-	hypothetical protein
3536	 60.55	+1	3845721..3846488	-	255	189426618	-	Glov_3574	-	RDD domain containing protein
3537	 62.40	+1	3846481..3847488	-	335	189426619	-	Glov_3575	-	protein of unknown function DUF95 transmembrane
3538	 61.80	+1	3847485..3848819	-	444	189426620	-	Glov_3576	-	protein of unknown function DUF58
3539	 61.80	+1	3848816..3849781	-	321	189426621	-	Glov_3577	-	ATPase associated with various cellular activities AAA_3
3540	 59.49	0	3849778..3850947	-	389	189426622	-	Glov_3578	-	hypothetical protein
3541	 59.17	0	3850931..3852571	-	546	189426623	-	Glov_3579	-	hypothetical protein
3542	 58.26	0	3852568..3852888	-	106	189426624	-	Glov_3580	-	rhomboid family protein
3543	 54.71	0	3852885..3853436	-	183	189426625	-	Glov_3581	-	hypothetical protein
3544	 55.00	0	3853433..3854032	-	199	189426626	-	Glov_3582	-	hypothetical protein
3545	 56.98	0	3854032..3854919	-	295	189426627	-	Glov_3583	-	MJ0042 family finger-like protein
3546	 57.45	0	3855051..3855896	-	281	189426628	-	Glov_3584	-	apurinic endonuclease Apn1
3547	 62.54	+1	3855897..3857108	-	403	189426629	-	Glov_3585	-	molybdenum cofactor synthesis domain protein
3548	 57.30	0	3857111..3858028	-	305	189426630	-	Glov_3586	-	quinolinate synthetase complex, A subunit
3549	 58.48	0	3858352..3859035	-	227	189426631	-	Glov_3587	-	hypothetical protein
3550	 56.43	0	3859037..3859417	-	126	189426632	-	Glov_3588	-	hypothetical protein
3551	 53.33	0	3859588..3859842	-	84	189426633	-	Glov_3589	-	ribosomal protein L27
3552	 53.40	0	3859877..3860185	-	102	189426634	-	Glov_3590	-	ribosomal protein L21
3553	 54.19	0	3860464..3861120	-	218	189426635	-	Glov_3591	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
3554	 52.58	0	3861160..3861450	-	96	189426636	-	Glov_3592	-	DNA polymerase beta domain protein region
3555	 52.74	0	3861443..3861844	-	133	189426637	-	Glov_3593	-	nucleotidyltransferase substrate binding protein, HI0074 family
3556	 57.37	0	3861857..3863395	-	512	189426638	-	Glov_3594	-	phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
3557	 55.64	0	3863411..3864625	-	404	189426639	-	Glov_3595	-	efflux transporter, RND family, MFP subunit
3558	 61.48	+1	3865162..3866202	+	346	189426640	-	Glov_3596	-	translation initiation factor, aIF-2BI family
3559	 58.68	0	3866204..3869407	+	1067	189426641	-	Glov_3597	-	(Glutamate--ammonia-ligase) adenylyltransferase
3560	 58.47	0	3869404..3870660	+	418	189426642	-	Glov_3598	-	gamma-glutamyl phosphate reductase
3561	 59.68	+1	3870819..3872393	-	524	189426643	-	Glov_3599	-	FAD dependent oxidoreductase
3562	 55.31	0	3872399..3872803	-	134	189426644	-	Glov_3600	-	response regulator receiver protein
3563	 57.00	0	3872810..3874009	-	399	189426645	-	Glov_3601	-	response regulator receiver sensor signal transduction histidine kinase
3564	 51.54	0	3874037..3874492	-	151	189426646	-	Glov_3602	-	UspA domain protein
3565	 52.02	0	3874492..3874887	-	131	189426647	-	Glov_3603	-	response regulator receiver protein
3566	 58.66	0	3875012..3875848	-	278	189426648	-	Glov_3604	-	transcriptional regulator, putative
3567	 56.89	0	3875860..3876606	-	248	189426649	-	Glov_3605	-	Tetratricopeptide TPR_2 repeat protein
3568	 57.30	0	3876673..3877590	-	305	189426650	-	Glov_3606	-	PfkB domain protein
3569	 54.62	0	3877603..3878457	-	284	189426651	-	Glov_3607	-	methylthioadenosine phosphorylase
3570	 57.93	0	3878454..3879746	-	430	189426652	-	Glov_3608	-	diguanylate cyclase with PAS/PAC sensor
3571	 58.33	0	3879748..3880275	-	175	189426653	-	Glov_3609	-	4-vinyl reductase 4VR
3572	 58.90	0	3880268..3881323	-	351	189426654	-	Glov_3610	-	radical SAM enzyme, Cfr family
3573	 53.48	0	3881379..3881795	-	138	189426655	-	Glov_3611	-	Nucleoside-diphosphate kinase
3574	 60.36	+1	3881979..3883373	+	464	189426656	-	Glov_3612	-	sun protein
3575	 58.71	0	3883384..3884049	+	221	189426657	-	Glov_3613	-	Ribulose-phosphate 3-epimerase
3576	 57.45	0	3884063..3884995	+	310	189426658	-	Glov_3614	-	response regulator receiver modulated diguanylate cyclase
3577	 56.72	0	3885043..3886500	+	485	189426659	-	Glov_3615	-	transglutaminase domain protein
3578	 59.15	0	3886588..3887865	-	425	189426660	-	Glov_3616	-	peptidase M16 domain protein
3579	 55.40	0	3887862..3888296	-	144	189426661	-	Glov_3617	-	histidine triad (HIT) protein
3580	 56.83	0	3888440..3889384	-	314	189426662	-	Glov_3618	-	integral membrane sensor signal transduction histidine kinase
3581	 52.38	0	3889489..3889971	+	160	189426663	-	Glov_3619	-	hypothetical protein
3582	 56.58	0	3890032..3890586	-	184	189426664	-	Glov_3620	-	hypothetical protein
3583	 60.55	+1	3890631..3893147	-	838	189426665	-	Glov_3621	-	helicase c2
3584	 50.67	0	3893346..3895208	+	620	189426666	-	Glov_3623	-	integral membrane sensor signal transduction histidine kinase
3585	 53.43	0	3895205..3896617	+	470	189426667	-	Glov_3624	-	two component, sigma54 specific, transcriptional regulator, Fis family
3586	 50.47	0	3896885..3898675	+	596	189426668	-	Glov_3625	-	flavocytochrome c
3587	 51.97	0	3898779..3900023	+	414	189426669	-	Glov_3626	-	major facilitator superfamily MFS_1
3588	 44.65	-1	3900062..3901369	+	435	189426670	-	Glov_3627	-	outer membrane porin
3589	 56.67	0	3901475..3903424	-	649	189426671	-	Glov_3628	-	ABC transporter related
3590	 57.68	0	3903428..3904117	-	229	189426672	-	Glov_3629	-	ABC transporter related
3591	 55.84	0	3904120..3904581	-	153	189426673	-	Glov_3630	-	protein of unknown function DUF163
3592	 55.40	0	3904594..3905010	-	138	189426674	-	Glov_3631	-	iojap-like protein
3593	 56.54	0	3905007..3905648	-	213	189426675	-	Glov_3632	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
3594	 54.66	0	3905657..3906697	-	346	189426676	-	Glov_3633	-	NAD-dependent epimerase/dehydratase
3595	 56.97	0	3906714..3907610	-	298	189426677	-	Glov_3634	-	formyl transferase domain protein
3596	 56.87	0	3907607..3908545	-	312	189426678	-	Glov_3635	-	glycosyl transferase family 2
3597	 57.42	0	3908542..3909687	-	381	189426679	-	Glov_3636	-	3'-5' exonuclease
3598	 54.98	0	3909687..3910730	-	347	189426680	-	Glov_3637	-	Radical SAM domain protein
3599	 58.08	0	3910727..3911122	-	131	189426681	-	Glov_3638	-	tol-pal system-associated acyl-CoA thioesterase
3600	 54.17	0	3911341..3911988	-	215	189426682	-	Glov_3639	-	methyltransferase GidB
3601	 55.73	0	3911990..3913864	-	624	189426683	-	Glov_3640	-	glucose inhibited division protein A
3602	 56.25	0	3913895..3915277	-	460	189426684	-	Glov_3641	-	tRNA modification GTPase TrmE
3603	 47.21	-1	3915289..3916881	-	530	189426685	-	Glov_3642	-	60 kDa inner membrane insertion protein
3604	 51.64	0	3916900..3917112	-	70	189426686	-	Glov_3643	-	protein of unknown function DUF37
3605	 52.42	0	3917091..3917462	-	123	189426687	-	Glov_3644	-	ribonuclease P protein component
3606	 48.00	-1	3917480..3917629	-	49	189426688	-	Glov_3645	-	ribosomal protein L34
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.