IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3352	 47.59	-1	3636344..3638875	-	843	189426434	-	Glov_3385	-	Radical SAM domain protein
3353	 46.76	-1	3638896..3640929	-	677	189426435	-	Glov_3386	-	hypothetical protein
3354	 49.98	0	3640950..3643172	-	740	189426436	-	Glov_3387	-	hypothetical protein
3355	 50.79	0	3643186..3643752	-	188	189426437	-	Glov_3388	-	adenylylsulfate kinase
3356	 42.30	-2	3643740..3644720	-	326	189426438	-	Glov_3389	-	hypothetical protein
3357	 43.50	-2	3644713..3645489	-	258	189426439	-	Glov_3390	-	Methionyl-tRNA formyltransferase-like protein
3358	 46.55	-1	3645482..3646018	-	178	189426440	-	Glov_3391	-	hypothetical protein
3359	 46.98	-1	3646018..3646779	-	253	189426441	-	Glov_3392	-	transferase, putative
3360	 50.31	0	3646776..3647417	-	213	189426442	-	Glov_3393	-	peptidase C26
3361	 47.24	-1	3647414..3649801	-	795	189426443	-	Glov_3394	-	pyruvate phosphate dikinase PEP/pyruvate-binding
3362	 53.59	0	3650862..3651167	+	101	189426444	-	Glov_3396	-	transposase IS3/IS911 family protein
3363	 55.07	0	3651164..3651991	+	275	189426445	-	Glov_3397	-	Integrase catalytic region
3364	 46.17	-1	3652304..3652942	-	212	189426446	-	Glov_3398	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
3365	 45.35	-1	3652943..3653791	-	282	189426447	-	Glov_3399	-	histidine biosynthesis protein
3366	 47.79	-1	3653788..3654534	-	248	189426448	-	Glov_3400	-	acylneuraminate cytidylyltransferase
3367	 41.79	-2	3654539..3655993	-	484	189426449	-	Glov_3401	-	Radical SAM domain protein
3368	 45.80	-1	3655987..3657510	-	507	189426450	-	Glov_3402	-	DegT/DnrJ/EryC1/StrS aminotransferase
3369	 44.33	-2	3657512..3658393	-	293	189426451	-	Glov_3403	-	Xylose isomerase domain protein TIM barrel
3370	 48.08	-1	3658393..3658860	-	155	189426452	-	Glov_3404	-	GCN5-related N-acetyltransferase
3371	 46.98	-1	3658857..3659933	-	358	189426453	-	Glov_3405	-	N-acylneuraminate-9-phosphate synthase
3372	 49.72	0	3660148..3661038	-	296	189426454	-	Glov_3406	-	hypothetical protein
3373	 55.48	0	3661090..3662466	-	458	189426455	-	Glov_3407	-	two component, sigma54 specific, transcriptional regulator, Fis family
3374	 53.23	0	3662463..3663884	-	473	189426456	-	Glov_3408	-	integral membrane sensor signal transduction histidine kinase
3375	 55.07	0	3664004..3665296	+	430	189426457	-	Glov_3409	-	surface antigen (D15)
3376	 58.86	0	3665279..3667045	-	588	189426458	-	Glov_3410	-	ABC transporter related
3377	 58.05	0	3667059..3667499	-	146	189426459	-	Glov_3411	-	single-strand binding protein
3378	 58.58	0	3667639..3668343	+	234	189426460	-	Glov_3412	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3379	 65.05	+2	3668340..3668525	+	61	189426461	-	Glov_3413	-	hypothetical protein
3380	 58.08	0	3668529..3668924	+	131	189426462	-	Glov_3414	-	hypothetical protein
3381	 58.53	0	3668921..3670702	+	593	189426463	-	Glov_3415	-	beta-lactamase domain protein
3382	 58.61	0	3670862..3672499	-	545	189426464	-	Glov_3416	-	AMP-dependent synthetase and ligase
3383	 57.72	0	3672665..3673882	-	405	189426465	-	Glov_3417	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
3384	 57.22	0	3673983..3675104	-	373	189426466	-	Glov_3418	-	ABC-2 type transporter
3385	 60.25	+1	3675105..3677894	-	929	189426467	-	Glov_3419	-	ABC transporter related
3386	 55.87	0	3677891..3678964	-	357	189426468	-	Glov_3420	-	secretion protein HlyD family protein
3387	 50.58	0	3679023..3680048	-	341	189426469	-	Glov_3421	-	putative PAS/PAC sensor protein
3388	 48.51	-1	3680271..3681041	-	256	189426470	-	Glov_3422	-	short-chain dehydrogenase/reductase SDR
3389	 49.95	0	3681115..3682167	-	350	189426471	-	Glov_3423	-	hypothetical protein
3390	 51.89	0	3682208..3682762	-	184	189426472	-	Glov_3424	-	hypothetical protein
3391	 49.60	-1	3682828..3683571	-	247	189426473	-	Glov_3425	-	hypothetical protein
3392	 49.14	-1	3683650..3684813	-	387	189426474	-	Glov_3426	-	transposase IS4 family protein
3393	 46.09	-1	3684956..3685927	-	323	189426475	-	Glov_3427	-	glycosyl transferase family 39
3394	 50.35	0	3686184..3686747	-	187	189426476	-	Glov_3429	-	hypothetical protein
3395	 50.23	0	3686752..3686964	-	70	189426477	-	Glov_3430	-	hypothetical protein
3396	 45.26	-1	3687078..3687647	-	189	189426478	-	Glov_3431	-	transcriptional regulator, TetR family
3397	 50.28	0	3687743..3688651	-	302	189426479	-	Glov_3432	-	Phospholipase A(1)
3398	 62.27	+1	3688675..3690108	-	477	189426480	-	Glov_3433	-	RND efflux system, outer membrane lipoprotein, NodT family
3399	 57.29	0	3690110..3693277	-	1055	189426481	-	Glov_3434	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
3400	 59.50	0	3693290..3694489	-	399	189426482	-	Glov_3435	-	efflux transporter, RND family, MFP subunit
3401	 50.26	0	3694549..3695133	-	194	189426483	-	Glov_3436	-	transcriptional regulator, TetR family
3402	 43.52	-2	3695158..3695265	+	35	189426484	-	Glov_3437	-	hypothetical protein
3403	 53.40	0	3695446..3696018	+	190	189426485	-	Glov_3438	-	transcriptional regulator, TetR family
3404	 53.14	0	3696068..3696910	+	280	189426486	-	Glov_3439	-	OmpA/MotB domain protein
3405	 46.89	-1	3696952..3698625	-	557	189426487	-	Glov_3440	-	diguanylate cyclase
3406	 56.41	0	3698937..3700739	-	600	189426488	-	Glov_3441	-	GTP-binding protein TypA
3407	 52.19	0	3700829..3702769	-	646	189426489	-	Glov_3442	-	diguanylate cyclase with PAS/PAC sensor
3408	 49.46	-1	3702776..3703606	-	276	189426490	-	Glov_3443	-	ABC transporter, substrate-binding protein, putative
3409	 58.31	0	3703720..3705717	+	665	189426491	-	Glov_3444	-	excinuclease ABC, B subunit
3410	 57.66	0	3705857..3708010	-	717	189426492	-	Glov_3445	-	Hpt sensor hybrid histidine kinase
3411	 56.21	0	3708007..3708876	-	289	189426493	-	Glov_3446	-	metal dependent phosphohydrolase
3412	 56.85	0	3708863..3709198	-	111	189426494	-	Glov_3447	-	hypothetical protein
3413	 54.78	0	3709333..3709677	+	114	189426495	-	Glov_3448	-	hypothetical protein
3414	 51.48	0	3711556..3712773	-	405	189426496	-	Glov_3450	-	transposase mutator type
3415	 58.40	0	3713292..3714029	-	245	189426497	-	Glov_3451	-	extracellular solute-binding protein, family 1
3416	 60.53	+1	3714207..3715217	+	336	189426498	-	Glov_3452	-	4-hydroxythreonine-4-phosphate dehydrogenase
3417	 59.48	0	3715214..3715909	+	231	189426499	-	Glov_3453	-	sugar fermentation stimulation protein
3418	 51.20	0	3716035..3716325	-	96	189426500	-	Glov_3454	-	Stress responsive alpha-beta barrel domain protein
3419	 52.16	0	3716478..3717173	+	231	189426501	-	Glov_3455	-	hypothetical protein
3420	 57.36	0	3717306..3718229	+	307	189426502	-	Glov_3456	-	glycosyl transferase family 51
3421	 59.12	0	3718232..3719410	+	392	189426503	-	Glov_3457	-	phospholipase D/Transphosphatidylase
3422	 60.32	+1	3719416..3720171	+	251	189426504	-	Glov_3458	-	TatD-related deoxyribonuclease
3423	 56.43	0	3720229..3720570	+	113	189426505	-	Glov_3459	-	cytochrome c family protein, putative
3424	 54.63	0	3720670..3720885	+	71	189426506	-	Glov_3460	-	hypothetical protein
3425	 53.87	0	3720958..3721293	+	111	189426507	-	Glov_3461	-	hydrogenase expression/synthesis HypA
3426	 56.73	0	3721358..3723208	-	616	189426508	-	Glov_3462	-	Phosphoenolpyruvate carboxykinase (GTP)
3427	 56.80	0	3723333..3724163	-	276	189426509	-	Glov_3463	-	beta-lactamase domain protein
3428	 46.48	-1	3724313..3724525	-	70	189426510	-	Glov_3464	-	hypothetical protein
3429	 56.47	0	3724540..3727764	-	1074	189426511	-	Glov_3465	-	acriflavin resistance protein
3430	 51.60	0	3727775..3728086	-	103	189426512	-	Glov_3466	-	hypothetical protein
3431	 58.27	0	3728083..3729213	-	376	189426513	-	Glov_3467	-	efflux transporter, RND family, MFP subunit
3432	 58.05	0	3729213..3730559	-	448	189426514	-	Glov_3468	-	outer membrane efflux protein
3433	 53.97	0	3730704..3731270	-	188	189426515	-	Glov_3469	-	peptidoglycan-associated lipoprotein
3434	 56.07	0	3731380..3732672	-	430	189426516	-	Glov_3470	-	Tol-Pal system beta propeller repeat protein TolB
3435	 58.27	0	3732669..3733406	-	245	189426517	-	Glov_3471	-	TonB family protein
3436	 53.86	0	3733411..3733824	-	137	189426518	-	Glov_3472	-	protein TolR
3437	 54.24	0	3733834..3734517	-	227	189426519	-	Glov_3473	-	protein TolQ
3438	 58.68	0	3734591..3735379	-	262	189426520	-	Glov_3474	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3439	 58.81	0	3735382..3737724	-	780	189426521	-	Glov_3475	-	cell divisionFtsK/SpoIIIE
3440	 54.17	0	3737733..3738140	-	135	189426522	-	Glov_3476	-	OsmC family protein
3441	 52.87	0	3738137..3738991	-	284	189426523	-	Glov_3477	-	lipoprotein, putative
3442	 58.70	0	3739331..3740434	+	367	189426524	-	Glov_3478	-	homoserine O-acetyltransferase
3443	 59.20	0	3740438..3741214	+	258	189426525	-	Glov_3479	-	PP-loop domain protein
3444	 56.54	0	3741211..3741684	+	157	189426526	-	Glov_3480	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3445	 59.79	+1	3741681..3742247	+	188	189426527	-	Glov_3481	-	Chromate transporter
3446	 57.54	0	3742248..3742751	+	167	189426528	-	Glov_3482	-	Chromate transporter
3447	 53.16	0	3742779..3743126	+	115	189426529	-	Glov_3483	-	response regulator receiver protein
3448	 53.33	0	3743221..3743445	+	74	189426530	-	Glov_3484	-	nitrogen-fixing NifU domain protein
3449	 48.30	-1	3743523..3743669	-	48	189426531	-	Glov_3485	-	hypothetical protein
3450	 49.02	-1	3743701..3743853	-	50	189426532	-	Glov_3486	-	hypothetical protein
3451	 53.01	0	3744382..3746292	-	636	189426533	-	Glov_3487	-	hypothetical protein
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.