IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2903	 58.26	0	3150237..3150890	+	217	189425985	-	Glov_2935	-	protein of unknown function DUF1121
2904	 63.11	+1	3150903..3151634	+	243	189425986	-	Glov_2936	-	competence protein F, putative
2905	 55.35	0	3151736..3152212	+	158	189425987	-	Glov_2937	-	transcriptional regulator, BadM/Rrf2 family
2906	 60.56	+1	3152256..3153041	+	261	189425988	-	Glov_2938	-	ExsB family protein
2907	 58.30	0	3153032..3153904	-	290	189425989	-	Glov_2939	-	hypothetical protein
2908	 61.05	+1	3153929..3154444	-	171	189425990	-	Glov_2940	-	hypothetical protein
2909	 60.06	+1	3154462..3154779	-	105	189425991	-	Glov_2941	-	hypothetical protein
2910	 61.14	+1	3154970..3156325	-	451	189425992	-	Glov_2942	-	two component, sigma54 specific, transcriptional regulator, Fis family
2911	 61.06	+1	3156322..3157569	-	415	189425993	-	Glov_2943	-	integral membrane sensor signal transduction histidine kinase
2912	 52.50	0	3157723..3158463	+	246	189425994	-	Glov_2944	-	hypothetical protein
2913	 55.21	0	3158460..3160004	+	514	189425995	-	Glov_2945	-	integral membrane sensor signal transduction histidine kinase
2914	 53.20	0	3159999..3160451	-	150	189425996	-	Glov_2946	-	GCN5-related N-acetyltransferase
2915	 59.25	0	3160474..3161376	-	300	189425997	-	Glov_2947	-	protein of unknown function DUF815
2916	 58.28	0	3161393..3161881	-	162	189425998	-	Glov_2948	-	ybaK/ebsC protein
2917	 62.51	+1	3162025..3163035	-	336	189425999	-	Glov_2949	-	hydrogenase expression/formation protein HypE
2918	 60.05	+1	3163208..3164536	+	442	189426000	-	Glov_2950	-	hypothetical protein
2919	 55.82	0	3164560..3165306	+	248	189426001	-	Glov_2951	-	outer membrane assembly lipoprotein YfiO
2920	 59.83	+1	3165303..3165887	+	194	189426002	-	Glov_2952	-	protein of unknown function DUF205
2921	 58.45	0	3165893..3166525	-	210	189426003	-	Glov_2953	-	NUDIX hydrolase
2922	 58.22	0	3166627..3170010	+	1127	189426004	-	Glov_2954	-	multi-sensor hybrid histidine kinase
2923	 59.01	0	3170007..3170933	+	308	189426005	-	Glov_2955	-	response regulator receiver modulated diguanylate cyclase
2924	 59.47	0	3170940..3171815	+	291	189426006	-	Glov_2956	-	hypothetical protein
2925	 55.03	0	3171974..3174406	-	810	189426007	-	Glov_2957	-	PAS/PAC sensor hybrid histidine kinase
2926	 57.14	0	3174403..3175263	-	286	189426008	-	Glov_2958	-	ribonuclease BN
2927	 56.20	0	3175271..3175786	-	171	189426009	-	Glov_2959	-	Redoxin domain protein
2928	 57.66	0	3175965..3176297	+	110	189426010	-	Glov_2960	-	Cupin 2 conserved barrel domain protein
2929	 55.19	0	3176321..3177949	-	542	189426011	-	Glov_2961	-	methyl-accepting chemotaxis sensory transducer
2930	 54.13	0	3178054..3178659	-	201	189426012	-	Glov_2962	-	Carbonate dehydratase
2931	 54.04	0	3178687..3179256	-	189	189426013	-	Glov_2963	-	isochorismatase hydrolase
2932	 59.88	+1	3179357..3179680	-	107	189426014	-	Glov_2964	-	hypothetical protein
2933	 57.52	0	3179790..3181013	+	407	189426015	-	Glov_2965	-	hypothetical protein
2934	 58.29	0	3181028..3182101	+	357	189426016	-	Glov_2966	-	twitching motility protein
2935	 58.33	0	3182128..3182811	+	227	189426017	-	Glov_2967	-	hypothetical protein
2936	 53.40	0	3183344..3184285	+	313	189426018	-	Glov_2968	-	hypothetical protein
2937	 54.14	0	3184503..3185021	+	172	189426019	-	Glov_2969	-	protein of unknown function DUF395 YeeE/YedE
2938	 52.84	0	3185018..3185545	+	175	189426020	-	Glov_2970	-	protein of unknown function DUF395 YeeE/YedE
2939	 45.47	-1	3185598..3186050	+	150	189426021	-	Glov_2971	-	hypothetical protein
2940	 44.85	-1	3186212..3186376	-	54	189426022	-	Glov_2972	-	hypothetical protein
2941	 49.03	-1	3186537..3186950	+	137	189426023	-	Glov_2973	-	hypothetical protein
2942	 52.72	0	3187084..3188022	-	312	189426024	-	Glov_2974	-	transposase IS4 family protein
2943	 51.46	0	3188122..3191376	+	1084	189426025	-	Glov_2975	-	diguanylate cyclase with PAS/PAC sensor
2944	 61.31	+1	3193503..3194660	-	385	189426026	-	Glov_2977	-	aminotransferase class I and II
2945	 58.12	0	3194660..3196321	-	553	189426027	-	Glov_2978	-	protein of unknown function DUF323
2946	 47.58	-1	3196424..3197188	-	254	189426028	-	Glov_2979	-	D12 class N6 adenine-specific DNA methyltransferase
2947	 49.62	-1	3197331..3197723	-	130	189426029	-	Glov_2980	-	hypothetical protein
2948	 56.81	0	3197725..3200058	-	777	189426030	-	Glov_2981	-	hypothetical protein
2949	 56.72	0	3200058..3200429	-	123	189426031	-	Glov_2982	-	hypothetical protein
2950	 56.98	0	3200426..3200869	-	147	189426032	-	Glov_2983	-	hypothetical protein
2951	 57.87	0	3200866..3201240	-	124	189426033	-	Glov_2984	-	hypothetical protein
2952	 51.20	0	3201240..3202739	-	499	189426034	-	Glov_2985	-	hypothetical protein
2953	 56.82	0	3202768..3203427	+	219	189426035	-	Glov_2986	-	dihydrouridine synthase, DuS
2954	 60.93	+1	3203407..3204939	-	510	189426036	-	Glov_2987	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
2955	 60.56	+1	3204943..3205827	-	294	189426037	-	Glov_2988	-	protein of unknown function DUF362
2956	 60.35	+1	3205882..3207384	-	500	189426038	-	Glov_2989	-	Radical SAM domain protein
2957	 40.04	-2	3207541..3208047	-	168	189426039	-	Glov_2990	-	hypothetical protein
2958	 31.93	-2	3208044..3209186	-	380	189426040	-	Glov_2991	-	abortive infection protein
2959	 60.73	+1	3209628..3211496	-	622	189426041	-	Glov_2992	-	Radical SAM domain protein
2960	 59.20	0	3211639..3212334	+	231	189426042	-	Glov_2993	-	type IV pilus assembly PilZ
2961	 56.14	0	3212392..3214377	+	661	189426043	-	Glov_2994	-	hypothetical protein
2962	 59.94	+1	3214396..3215391	+	331	189426044	-	Glov_2995	-	quinone oxidoreductase, YhdH/YhfP family
2963	 50.31	0	3215471..3215629	-	52	189426045	-	Glov_2996	-	hypothetical protein
2964	 59.39	0	3215788..3216282	+	164	189426046	-	Glov_2997	-	thioesterase superfamily protein
2965	 56.11	0	3216331..3216813	+	160	189426047	-	Glov_2998	-	SEC-C motif domain protein
2966	 60.87	+1	3216810..3217430	+	206	189426048	-	Glov_2999	-	protein of unknown function UPF0126
2967	 61.73	+1	3217418..3218530	-	370	189426049	-	Glov_3000	-	Methyltransferase type 12
2968	 53.54	0	3218601..3219080	+	159	189426050	-	Glov_3001	-	Domain of unknown function DUF1791
2969	 57.31	0	3219030..3219617	-	195	189426051	-	Glov_3002	-	nitroreductase
2970	 65.52	+2	3219610..3220653	-	347	189426052	-	Glov_3003	-	zinc-binding alcohol dehydrogenase family protein
2971	 62.60	+1	3220643..3221749	-	368	189426053	-	Glov_3004	-	alanine dehydrogenase
2972	 54.52	0	3222124..3222732	+	202	189426054	-	Glov_3005	-	OmpW family protein
2973	 54.59	0	3222823..3223857	+	344	189426055	-	Glov_3006	-	beta-lactamase domain protein
2974	 54.17	0	3223913..3224440	-	175	189426056	-	Glov_3007	-	DTW domain containing protein
2975	 54.41	0	3224482..3225207	+	241	189426057	-	Glov_3008	-	hypothetical protein
2976	 43.28	-2	3225360..3225560	+	66	189426058	-	Glov_3009	-	cold-shock DNA-binding domain protein
2977	 45.33	-1	3225701..3225850	+	49	189426059	-	Glov_3010	-	hypothetical protein
2978	 54.88	0	3225886..3227523	-	545	189426060	-	Glov_3011	-	ABC transporter related
2979	 54.73	0	3227681..3228283	-	200	189426061	-	Glov_3012	-	transcriptional regulator, TetR family
2980	 56.75	0	3228524..3230086	+	520	189426062	-	Glov_3013	-	Acetyl-CoA hydrolase
2981	 52.31	0	3230138..3230353	+	71	189426063	-	Glov_3014	-	hypothetical protein
2982	 59.72	+1	3230378..3231859	-	493	189426064	-	Glov_3015	-	glutamate synthase, NADH/NADPH, small subunit
2983	 58.51	0	3231911..3236485	-	1524	189426065	-	Glov_3016	-	Glutamate synthase (ferredoxin)
2984	 56.52	0	3236835..3237317	-	160	189426066	-	Glov_3017	-	GreA/GreB family elongation factor
2985	 57.71	0	3237349..3238107	-	252	189426067	-	Glov_3018	-	hypothetical protein
2986	 56.53	0	3238138..3239124	-	328	189426068	-	Glov_3019	-	aminoglycoside phosphotransferase
2987	 60.16	+1	3239121..3240518	-	465	189426069	-	Glov_3020	-	DEAD/DEAH box helicase domain protein
2988	 40.95	-2	3240606..3240710	-	34	189426070	-	Glov_3021	-	hypothetical protein
2989	 55.09	0	3240809..3241024	-	71	189426071	-	Glov_3022	-	hypothetical protein
2990	 55.38	0	3241066..3242040	-	324	189426072	-	Glov_3023	-	hypothetical protein
2991	 53.47	0	3242230..3243078	+	282	189426073	-	Glov_3024	-	MscS Mechanosensitive ion channel
2992	 53.45	0	3243093..3243614	-	173	189426074	-	Glov_3025	-	GCN5-related N-acetyltransferase
2993	 57.72	0	3243759..3245021	-	420	189426075	-	Glov_3026	-	protein of unknown function DUF445
2994	 59.83	+1	3245140..3245373	-	77	189426076	-	Glov_3027	-	protein of unknown function DUF1653
2995	 60.49	+1	3245591..3246319	+	242	189426077	-	Glov_3028	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2996	 56.88	0	3246401..3246676	-	91	189426078	-	Glov_3029	-	hypothetical protein
2997	 62.04	+1	3246698..3247216	-	172	189426079	-	Glov_3030	-	protein of unknown function UPF0066
2998	 56.68	0	3247386..3248477	+	363	189426080	-	Glov_3031	-	BioD-like protein N-terminal domain of phosphotransacetylase-like protein
2999	 52.94	0	3248534..3248941	-	135	189426081	-	Glov_3032	-	Secreted repeat of unknown function
3000	 58.03	0	3249242..3250561	+	439	189426082	-	Glov_3033	-	Diaminopimelate decarboxylase
3001	 61.16	+1	3250635..3251759	-	374	189426083	-	Glov_3034	-	peptidase T-like protein
3002	 59.66	0	3252098..3253339	+	413	189426084	-	Glov_3035	-	hypothetical protein
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.