IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
246	 54.75	0	235131..236087	+	318	189423328	-	Glov_0256	-	hypothetical protein
247	 50.30	0	236212..236376	+	54	189423329	-	Glov_0257	-	hypothetical protein
248	 51.28	0	236389..237363	+	324	189423330	-	Glov_0258	-	hypothetical protein
249	 51.74	0	237448..237648	+	66	189423331	-	Glov_0259	-	hypothetical protein
250	 55.19	0	237645..237914	+	89	189423332	-	Glov_0260	-	hypothetical protein
251	 54.35	0	238014..238427	+	137	189423333	-	Glov_0261	-	hypothetical protein
252	 54.98	0	238417..239340	+	307	189423334	-	Glov_0262	-	ATPase associated with various cellular activities AAA_5
253	 52.85	0	239351..239683	+	110	189423335	-	Glov_0263	-	hypothetical protein
254	 54.24	0	239761..240645	+	294	189423336	-	Glov_0264	-	hypothetical protein
255	 53.81	0	240655..242373	+	572	189423337	-	Glov_0265	-	von Willebrand factor type A
256	 53.37	0	242459..243022	+	187	189423338	-	Glov_0266	-	hypothetical protein
257	 53.70	0	243006..243275	+	89	189423339	-	Glov_0267	-	hypothetical protein
258	 56.08	0	243384..246737	+	1117	189423340	-	Glov_0268	-	type III restriction protein res subunit
259	 50.11	0	246820..247254	+	144	189423341	-	Glov_0269	-	hypothetical protein
260	 52.58	0	247251..247463	+	70	189423342	-	Glov_0270	-	hypothetical protein
261	 53.79	0	247548..248246	+	232	189423343	-	Glov_0271	-	hypothetical protein
262	 54.60	0	248248..248769	+	173	189423344	-	Glov_0272	-	hypothetical protein
263	 56.14	0	248855..249310	+	151	189423345	-	Glov_0273	-	hypothetical protein
264	 55.56	0	249346..249858	+	170	189423346	-	Glov_0274	-	zinc finger CHC2-family protein
265	 51.22	0	249940..250431	+	163	189423347	-	Glov_0275	-	DNA repair protein RadC
266	 50.00	0	250569..250706	+	45	189423348	-	Glov_0276	-	hypothetical protein
267	 50.56	0	250883..252409	+	508	189423349	-	Glov_0277	-	filamentation induced by cAMP protein Fic
268	 38.19	-2	252479..252952	-	157	189423350	-	Glov_0278	-	conserved hypothetical cytosolic protein
269	 39.16	-2	252965..253513	-	182	189423351	-	Glov_0279	-	Domain of unknown function DUF1863
270	 42.53	-2	253552..255573	-	673	189423352	-	Glov_0280	-	hypothetical protein
271	 50.76	0	255586..255849	-	87	189423353	-	Glov_0281	-	hypothetical protein
272	 42.14	-2	255976..256827	+	283	189423354	-	Glov_0282	-	hypothetical protein
273	 49.81	0	256832..257608	+	258	189423355	-	Glov_0283	-	YcgL
274	 54.67	0	257605..258096	+	163	189423356	-	Glov_0284	-	hypothetical protein
275	 53.47	0	258097..259293	+	398	189423357	-	Glov_0285	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
276	 52.06	0	259284..259769	-	161	189423358	-	Glov_0286	-	hypothetical protein
277	 57.30	0	259766..260854	-	362	189423359	-	Glov_0287	-	integrase domain protein SAM domain protein
278	 52.78	0	260847..261206	-	119	189423360	-	Glov_0288	-	hypothetical protein
279	 51.89	0	261286..261549	-	87	189423361	-	Glov_0289	-	WGR domain protein
280	 46.45	-1	261791..262636	-	281	189423362	-	Glov_0290	-	HNH endonuclease
281	 44.96	-1	262656..264272	-	538	189423363	-	Glov_0291	-	hypothetical protein
282	 43.90	-2	264287..264712	-	141	189423364	-	Glov_0292	-	hypothetical protein
283	 43.35	-2	264709..266634	-	641	189423365	-	Glov_0293	-	Non-specific serine/threonine protein kinase
284	 44.72	-1	266668..267879	-	403	189423366	-	Glov_0294	-	Restriction endonuclease EcoRII
285	 50.54	0	267954..268418	-	154	189423367	-	Glov_0295	-	DNA mismatch endonuclease Vsr
286	 46.00	-1	268418..268717	-	99	189423368	-	Glov_0296	-	hypothetical protein
287	 44.44	-2	268714..268947	-	77	189423369	-	Glov_0297	-	hypothetical protein
288	 47.04	-1	268959..270206	-	415	189423370	-	Glov_0298	-	DNA-cytosine methyltransferase
289	 39.50	-2	270776..272380	-	534	189423371	-	Glov_0300	-	hypothetical protein
290	 39.60	-2	272373..275357	-	994	189423372	-	Glov_0301	-	histidine kinase
291	 44.15	-2	275350..276477	-	375	189423373	-	Glov_0302	-	DNA-cytosine methyltransferase
292	 43.92	-2	276848..277225	+	125	189423374	-	Glov_0303	-	hypothetical protein
293	 40.43	-2	277204..277527	-	107	189423375	-	Glov_0304	-	hypothetical protein
294	 54.23	0	277531..281148	-	1205	189423376	-	Glov_0305	-	hypothetical protein
295	 50.88	0	281126..281866	-	246	189423377	-	Glov_0306	-	hypothetical protein
296	 57.14	0	281875..282126	-	83	189423378	-	Glov_0307	-	hypothetical protein
297	 51.92	0	282137..282631	-	164	189423379	-	Glov_0308	-	type IV secretory protease
298	 48.35	-1	282609..283001	-	130	189423380	-	Glov_0309	-	hypothetical protein
299	 52.65	0	283025..283987	-	320	189423381	-	Glov_0310	-	type-F conjugative transfer system pilin assembly protein TrbC
300	 55.82	0	283987..285009	-	340	189423382	-	Glov_0311	-	TraU family protein
301	 50.96	0	284993..285463	-	156	189423383	-	Glov_0312	-	hypothetical protein
302	 55.86	0	285460..286116	-	218	189423384	-	Glov_0313	-	conserved hypothetical cytosolic protein
303	 55.82	0	286113..289487	-	1124	189423385	-	Glov_0314	-	hypothetical protein
304	 55.49	0	289493..291496	-	667	189423386	-	Glov_0315	-	hypothetical protein
305	 52.70	0	291453..293900	-	815	189423387	-	Glov_0316	-	sex pilus assembly protein
306	 53.54	0	293903..294397	-	164	189423388	-	Glov_0317	-	hypothetical protein
307	 53.66	0	294394..295662	-	422	189423389	-	Glov_0318	-	TraB pilus assembly family protein
308	 49.05	-1	295652..296599	-	315	189423390	-	Glov_0319	-	hypothetical protein
309	 51.30	0	296599..297177	-	192	189423391	-	Glov_0320	-	conserved hypothetical sex pilus assembly and synthesis protein
310	 49.44	-1	297200..297466	-	88	189423392	-	Glov_0321	-	hypothetical protein
311	 57.33	0	297526..297825	-	99	189423393	-	Glov_0322	-	hypothetical protein
312	 51.93	0	297880..298632	-	250	189423394	-	Glov_0323	-	protein-disulfide isomerase
313	 50.50	0	298629..299234	-	201	189423395	-	Glov_0324	-	OmpA/MotB domain protein
314	 53.13	0	299514..300806	-	430	189423396	-	Glov_0325	-	HipA domain protein
315	 53.39	0	300796..301134	-	112	189423397	-	Glov_0326	-	transcriptional regulator, XRE family
316	 47.48	-1	301277..301594	-	105	189423398	-	Glov_0327	-	hypothetical protein
317	 51.93	0	301604..302485	-	293	189423399	-	Glov_0328	-	hypothetical protein
318	 49.58	-1	302701..303297	-	198	189423400	-	Glov_0329	-	hypothetical protein
319	 47.62	-1	303386..303847	-	153	189423401	-	Glov_0330	-	hypothetical protein
320	 50.85	0	303903..304547	-	214	189423402	-	Glov_0331	-	putative RNA polymerase, sigma 70 family subunit
321	 47.27	-1	304694..305023	-	109	189423403	-	Glov_0332	-	hypothetical protein
322	 50.48	0	305287..306126	-	279	189423404	-	Glov_0333	-	TrfA family protein
323	 30.89	-2	306314..306436	-	40	189423405	-	Glov_0334	-	hypothetical protein
324	 46.75	-1	306642..307334	+	230	189423406	-	Glov_0335	-	putative phage repressor
325	 47.44	-1	307349..308851	+	500	189423407	-	Glov_0336	-	Resolvase domain
326	 57.89	0	308706..309878	-	390	189423408	-	Glov_0337	-	Mg chelatase, subunit ChlI
327	 59.08	0	309880..310683	-	267	189423409	-	Glov_0338	-	protein of unknown function DUF152
328	 57.81	0	310701..311321	-	206	189423410	-	Glov_0339	-	SNARE associated Golgi protein
329	 52.51	0	311406..311843	+	145	189423411	-	Glov_0340	-	lipoprotein, putative
330	 59.64	0	311852..312805	+	317	189423412	-	Glov_0341	-	tyrosine recombinase XerC
331	 55.11	0	312845..313519	-	224	189423413	-	Glov_0342	-	hypothetical protein
332	 56.68	0	313526..314266	-	246	189423414	-	Glov_0343	-	hypothetical protein
333	 57.06	0	314453..315430	+	325	189423415	-	Glov_0344	-	Integrase catalytic region
334	 57.52	0	315525..317120	-	531	189423416	-	Glov_0345	-	Acetyl-CoA hydrolase
335	 58.43	0	317317..318105	-	262	189423417	-	Glov_0346	-	tRNA pseudouridine synthase A
336	 59.13	0	318224..319324	-	366	189423418	-	Glov_0347	-	aspartate-semialdehyde dehydrogenase
337	 57.23	0	319392..320483	-	363	189423419	-	Glov_0348	-	3-isopropylmalate dehydrogenase
338	 58.95	0	320612..321778	-	388	189423420	-	Glov_0349	-	Methionine adenosyltransferase
339	 58.02	0	321847..322170	-	107	189423421	-	Glov_0350	-	hypothetical protein
340	 61.70	+1	322170..322934	-	254	189423422	-	Glov_0351	-	protein of unknown function DUF169
341	 58.18	0	322970..323299	-	109	189423423	-	Glov_0352	-	RNP-1 like RNA-binding protein
342	 63.57	+1	323446..323703	-	85	189423424	-	Glov_0353	-	protein of unknown function UPF0153
343	 57.69	0	323708..324019	-	103	189423425	-	Glov_0354	-	Rhodanese domain protein
344	 54.04	0	324043..324810	-	255	189423426	-	Glov_0355	-	hypothetical protein
345	 59.07	0	324888..326282	-	464	189423427	-	Glov_0356	-	adenosylhomocysteinase
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.