IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2606	 55.90	0	2820600..2822132	+	510	189425688	-	Glov_2632	-	integral membrane sensor signal transduction histidine kinase
2607	 59.47	0	2822129..2823532	+	467	189425689	-	Glov_2633	-	two component, sigma54 specific, transcriptional regulator, Fis family
2608	 57.43	0	2823670..2825976	+	768	189425690	-	Glov_2634	-	diguanylate cyclase with PAS/PAC sensor
2609	 59.13	0	2825976..2827301	+	441	189425691	-	Glov_2635	-	hypothetical protein
2610	 54.69	0	2827340..2827648	-	102	189425692	-	Glov_2636	-	hypothetical protein
2611	 58.08	0	2827717..2828112	-	131	189425693	-	Glov_2637	-	protein of unknown function UPF0047
2612	 57.50	0	2828192..2829271	-	359	189425694	-	Glov_2638	-	branched-chain amino acid aminotransferase
2613	 56.01	0	2829562..2829852	+	96	189425695	-	Glov_2639	-	histone family protein DNA-binding protein
2614	 56.26	0	2829955..2831319	-	454	189425696	-	Glov_2640	-	sodium:neurotransmitter symporter
2615	 60.55	+1	2831356..2833317	-	653	189425697	-	Glov_2641	-	hypothetical protein
2616	 58.12	0	2833320..2834138	-	272	189425698	-	Glov_2642	-	ATPase associated with various cellular activities AAA_5
2617	 54.21	0	2834163..2836097	-	644	189425699	-	Glov_2643	-	peptidase S9 prolyl oligopeptidase active site domain protein
2618	 59.91	+1	2836130..2837845	-	571	189425700	-	Glov_2644	-	Xanthine/uracil/vitamin C permease
2619	 58.49	0	2838107..2839036	-	309	189425701	-	Glov_2645	-	protein of unknown function DUF6 transmembrane
2620	 51.21	0	2839186..2840304	+	372	189425702	-	Glov_2646	-	transposase IS4 family protein
2621	 59.11	0	2840871..2842472	-	533	189425703	-	Glov_2647	-	hybrid cluster protein
2622	 48.20	-1	2842749..2842970	+	73	189425704	-	Glov_2648	-	hypothetical protein
2623	 57.89	0	2842973..2843428	+	151	189425705	-	Glov_2649	-	hypothetical protein
2624	 59.02	0	2843428..2843976	+	182	189425706	-	Glov_2650	-	Hemerythrin HHE cation binding domain protein
2625	 60.38	+1	2844143..2844619	+	158	189425707	-	Glov_2651	-	cytochrome c, class I
2626	 61.25	+1	2844619..2848200	+	1193	189425708	-	Glov_2652	-	nitrate reductase, alpha subunit
2627	 60.06	+1	2848205..2849656	+	483	189425709	-	Glov_2653	-	nitrate reductase, beta subunit
2628	 61.61	+1	2849653..2850186	+	177	189425710	-	Glov_2654	-	nitrate reductase molybdenum cofactor assembly chaperone
2629	 60.82	+1	2850180..2850863	+	227	189425711	-	Glov_2655	-	respiratory nitrate reductase, gamma subunit
2630	 58.45	0	2850873..2852126	+	417	189425712	-	Glov_2656	-	major facilitator superfamily MFS_1
2631	 59.75	+1	2852151..2853524	+	457	189425713	-	Glov_2657	-	nitrite transporter
2632	 57.31	0	2853543..2853980	+	145	189425714	-	Glov_2658	-	putative PAS/PAC sensor protein
2633	 60.75	+1	2853981..2854892	-	303	189425715	-	Glov_2659	-	cytochrome b5
2634	 57.12	0	2854981..2855514	+	177	189425716	-	Glov_2660	-	protein of unknown function DUF1130
2635	 47.93	-1	2855710..2856216	-	168	189425717	-	Glov_2661	-	hypothetical protein
2636	 62.06	+1	2856312..2857157	-	281	189425718	-	Glov_2662	-	lipoic acid synthetase
2637	 61.35	+1	2857154..2857981	-	275	189425719	-	Glov_2663	-	biotin/lipoate A/B protein ligase
2638	 54.70	0	2858329..2858871	+	180	189425720	-	Glov_2664	-	flavin reductase domain protein FMN-binding
2639	 31.19	-2	2859048..2859653	+	201	189425721	-	Glov_2665	-	HhH-GPD family protein
2640	 49.27	-1	2860090..2861049	+	319	189425722	-	Glov_2666	-	hypothetical protein
2641	 45.03	-1	2861062..2862360	+	432	189425723	-	Glov_2667	-	hypothetical protein
2642	 52.26	0	2862875..2864359	+	494	189425724	-	Glov_2668	-	hypothetical protein
2643	 57.28	0	2864588..2865322	+	244	189425725	-	Glov_2669	-	methyltransferase
2644	 57.10	0	2865319..2866290	+	323	189425726	-	Glov_2670	-	methyltransferase
2645	 57.68	0	2866587..2868032	-	481	189425727	-	Glov_2671	-	Glycine dehydrogenase (decarboxylating)
2646	 59.24	0	2868023..2869369	-	448	189425728	-	Glov_2672	-	Glycine dehydrogenase (decarboxylating)
2647	 54.67	0	2869379..2869753	-	124	189425729	-	Glov_2673	-	glycine cleavage system H protein
2648	 53.14	0	2869795..2870208	-	137	189425730	-	Glov_2674	-	hypothetical protein
2649	 57.86	0	2870235..2871335	-	366	189425731	-	Glov_2675	-	glycine cleavage system T protein
2650	 54.88	0	2871357..2871797	-	146	189425732	-	Glov_2676	-	hypothetical protein
2651	 55.69	0	2871942..2873189	+	415	189425733	-	Glov_2677	-	metal dependent phosphohydrolase
2652	 59.12	0	2873260..2874279	-	339	189425734	-	Glov_2678	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2653	 54.78	0	2874559..2875938	+	459	189425735	-	Glov_2679	-	diguanylate cyclase
2654	 60.00	+1	2875940..2877604	-	554	189425736	-	Glov_2680	-	DNA repair protein RecN
2655	 55.59	0	2877611..2878468	-	285	189425737	-	Glov_2681	-	ATP-NAD/AcoX kinase
2656	 49.24	-1	2878605..2881088	-	827	189425738	-	Glov_2682	-	integral membrane sensor hybrid histidine kinase
2657	 51.71	0	2881319..2882368	+	349	189425739	-	Glov_2683	-	hypothetical protein
2658	 53.87	0	2882372..2884309	+	645	189425740	-	Glov_2684	-	integral membrane sensor hybrid histidine kinase
2659	 61.87	+1	2884323..2885468	-	381	189425741	-	Glov_2685	-	Glycerate kinase
2660	 57.38	0	2885465..2886013	-	182	189425742	-	Glov_2686	-	NUDIX hydrolase
2661	 64.93	+2	2886048..2887604	-	518	189425743	-	Glov_2687	-	FAD dependent oxidoreductase
2662	 63.98	+1	2887601..2889091	-	496	189425744	-	Glov_2688	-	glycerol kinase
2663	 53.07	0	2889661..2890116	-	151	189425745	-	Glov_2689	-	SsrA-binding protein
2664	 49.58	-1	2890281..2891234	+	317	189425746	-	Glov_2690	-	magnesium and cobalt transport protein CorA
2665	 56.53	0	2891267..2893969	+	900	189425747	-	Glov_2691	-	UTP-GlnB uridylyltransferase, GlnD
2666	 61.94	+1	2893966..2894853	+	295	189425748	-	Glov_2692	-	tyrosine recombinase XerD
2667	 55.90	0	2894921..2895691	+	256	189425749	-	Glov_2693	-	beta-lactamase domain protein
2668	 52.54	0	2895850..2896932	-	360	189425750	-	Glov_2694	-	transposase IS4 family protein
2669	 59.49	0	2897210..2898505	+	431	189425751	-	Glov_2695	-	adenylosuccinate lyase
2670	 55.86	0	2898498..2899607	+	369	189425752	-	Glov_2696	-	MscS Mechanosensitive ion channel
2671	 58.52	0	2899627..2900031	+	134	189425753	-	Glov_2697	-	hypothetical protein
2672	 58.49	0	2900028..2901140	+	370	189425754	-	Glov_2698	-	hypothetical protein
2673	 59.85	+1	2901150..2904140	+	996	189425755	-	Glov_2699	-	phosphoribosylformylglycinamidine synthase II
2674	 55.28	0	2904137..2905111	+	324	189425756	-	Glov_2700	-	diguanylate cyclase with PAS/PAC sensor
2675	 59.90	+1	2905108..2905935	+	275	189425757	-	Glov_2701	-	Phosphoribosylformylglycinamidine synthase
2676	 59.17	0	2905932..2907359	+	475	189425758	-	Glov_2702	-	amidophosphoribosyltransferase
2677	 59.78	+1	2907356..2907907	+	183	189425759	-	Glov_2703	-	orotate phosphoribosyltransferase
2678	 59.73	+1	2907904..2908653	+	249	189425760	-	Glov_2704	-	hemolysin A
2679	 59.42	0	2908650..2908994	+	114	189425761	-	Glov_2705	-	histidine triad (HIT) protein
2680	 58.73	0	2909148..2909336	+	62	189425762	-	Glov_2706	-	hypothetical protein
2681	 60.81	+1	2909329..2909550	+	73	189425763	-	Glov_2707	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
2682	 56.46	0	2909684..2910457	+	257	189425764	-	Glov_2708	-	ribosomal protein S2
2683	 56.62	0	2910527..2911462	+	311	189425765	-	Glov_2709	-	translation elongation factor Ts
2684	 57.22	0	2911582..2912301	+	239	189425766	-	Glov_2710	-	uridylate kinase
2685	 53.41	0	2912304..2912861	+	185	189425767	-	Glov_2711	-	ribosome recycling factor
2686	 58.70	0	2912863..2913603	+	246	189425768	-	Glov_2712	-	undecaprenyl diphosphate synthase
2687	 58.69	0	2913627..2914403	+	258	189425769	-	Glov_2713	-	phosphatidate cytidylyltransferase
2688	 61.55	+1	2914406..2915578	+	390	189425770	-	Glov_2714	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2689	 58.18	0	2915575..2916705	+	376	189425771	-	Glov_2715	-	membrane-associated zinc metalloprotease
2690	 64.64	+1	2916702..2917391	+	229	189425772	-	Glov_2716	-	peptidase M22 glycoprotease
2691	 61.00	+1	2917487..2918650	+	387	189425773	-	Glov_2717	-	succinyl-CoA synthetase, beta subunit
2692	 61.51	+1	2918665..2919537	+	290	189425774	-	Glov_2718	-	succinyl-CoA synthetase, alpha subunit
2693	 53.81	0	2919827..2920207	+	126	189425775	-	Glov_2719	-	hypothetical protein
2694	 40.00	-2	2920510..2920674	+	54	189425776	-	Glov_2720	-	hypothetical protein
2695	 44.59	-2	2920714..2920935	+	73	189425777	-	Glov_2721	-	hypothetical protein
2696	 55.94	0	2920996..2922132	+	378	189425778	-	Glov_2722	-	response regulator receiver modulated metal dependent phosphohydrolase
2697	 60.17	+1	2922316..2925855	+	1179	189425779	-	Glov_2723	-	DNA polymerase III, alpha subunit
2698	 60.88	+1	2926008..2926958	+	316	189425780	-	Glov_2724	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
2699	 58.72	0	2927031..2927420	+	129	189425781	-	Glov_2725	-	protein of unknown function DUF454
2700	 56.86	0	2927417..2927518	+	33	189425782	-	Glov_2726	-	hypothetical protein
2701	 56.48	0	2927522..2927629	+	35	189425783	-	Glov_2727	-	hypothetical protein
2702	 60.85	+1	2927626..2928450	+	274	189425784	-	Glov_2728	-	pseudouridine synthase
2703	 59.12	0	2928463..2929854	+	463	189425785	-	Glov_2729	-	asparaginyl-tRNA synthetase
2704	 57.80	0	2929858..2930139	+	93	189425786	-	Glov_2730	-	protein of unknown function DUF503
2705	 58.57	0	2930237..2932633	+	798	189425787	-	Glov_2731	-	metal dependent phosphohydrolase
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.