IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
212	 51.32	0	204598..205053	+	151	189423294	-	Glov_0220	-	hypothetical protein
213	 47.91	-1	205053..205601	+	182	189423295	-	Glov_0221	-	Hemerythrin HHE cation binding domain protein
214	 41.86	-2	205624..205752	+	42	189423296	-	Glov_0222	-	hypothetical protein
215	 48.13	-1	205816..206403	+	195	189423297	-	Glov_0223	-	transcriptional regulator, TetR family
216	 52.06	0	206472..207731	+	419	189423298	-	Glov_0224	-	outer membrane efflux protein
217	 55.56	0	207755..208798	+	347	189423299	-	Glov_0225	-	efflux transporter, RND family, MFP subunit
218	 48.06	-1	208817..210133	-	438	189423300	-	Glov_0226	-	transposase IS204/IS1001/IS1096/IS1165 family protein
219	 57.99	0	210509..212053	-	514	189423301	-	Glov_0227	-	hypothetical protein
220	 52.71	0	212089..212919	-	276	189423302	-	Glov_0228	-	protein of unknown function DUF323
221	 53.87	0	213544..214746	+	400	189423303	-	Glov_0230	-	protein of unknown function DUF214
222	 52.24	0	214739..215473	+	244	189423304	-	Glov_0231	-	ABC transporter related
223	 50.19	0	215810..216616	+	268	189423305	-	Glov_0233	-	DNA/RNA non-specific endonuclease
224	 53.33	0	216613..216867	+	84	189423306	-	Glov_0234	-	hypothetical protein
225	 50.18	0	216887..217171	+	94	189423307	-	Glov_0235	-	protein of unknown function UPF0270
226	 52.25	0	217180..218760	+	526	189423308	-	Glov_0236	-	Exodeoxyribonuclease VII
227	 46.38	-1	218753..218959	+	68	189423309	-	Glov_0237	-	hypothetical protein
228	 47.83	-1	218981..219256	+	91	189423310	-	Glov_0238	-	histone family protein DNA-binding protein
229	 46.67	-1	219287..219526	+	79	189423311	-	Glov_0239	-	hypothetical protein
230	 52.92	0	219570..220478	+	302	189423312	-	Glov_0240	-	Exonuclease RNase T and DNA polymerase III
231	 52.69	0	220499..221092	+	197	189423313	-	Glov_0241	-	GCN5-related N-acetyltransferase
232	 50.29	0	221089..221259	+	56	189423314	-	Glov_0242	-	hypothetical protein
233	 57.81	0	221256..222023	+	255	189423315	-	Glov_0243	-	hypothetical protein
234	 55.88	0	222020..224206	+	728	189423316	-	Glov_0244	-	helicase, RecD/TraA family
235	 51.34	0	224203..224463	+	86	189423317	-	Glov_0245	-	hypothetical protein
236	 51.28	0	224561..226081	-	506	189423318	-	Glov_0246	-	ABC transporter related
237	 48.43	-1	226478..227179	-	233	189423319	-	Glov_0247	-	LexA DNA-binding domain protein
238	 54.04	0	227290..227796	+	168	189423320	-	Glov_0248	-	Lytic transglycosylase catalytic
239	 52.32	0	227783..228493	+	236	189423321	-	Glov_0249	-	hypothetical protein
240	 51.97	0	228468..229841	+	457	189423322	-	Glov_0250	-	TraG family protein
241	 50.58	0	229838..231304	+	488	189423323	-	Glov_0251	-	metal-dependent phosphohydrolase HD sub domain
242	 55.20	0	231301..232137	+	278	189423324	-	Glov_0252	-	glutaredoxin 2
243	 55.80	0	232134..233660	+	508	189423325	-	Glov_0253	-	hypothetical protein
244	 50.50	0	233682..234083	+	133	189423326	-	Glov_0254	-	hypothetical protein
245	 50.95	0	234602..235021	+	139	189423327	-	Glov_0255	-	single-strand binding protein
246	 54.75	0	235131..236087	+	318	189423328	-	Glov_0256	-	hypothetical protein
247	 50.30	0	236212..236376	+	54	189423329	-	Glov_0257	-	hypothetical protein
248	 51.28	0	236389..237363	+	324	189423330	-	Glov_0258	-	hypothetical protein
249	 51.74	0	237448..237648	+	66	189423331	-	Glov_0259	-	hypothetical protein
250	 55.19	0	237645..237914	+	89	189423332	-	Glov_0260	-	hypothetical protein
251	 54.35	0	238014..238427	+	137	189423333	-	Glov_0261	-	hypothetical protein
252	 54.98	0	238417..239340	+	307	189423334	-	Glov_0262	-	ATPase associated with various cellular activities AAA_5
253	 52.85	0	239351..239683	+	110	189423335	-	Glov_0263	-	hypothetical protein
254	 54.24	0	239761..240645	+	294	189423336	-	Glov_0264	-	hypothetical protein
255	 53.81	0	240655..242373	+	572	189423337	-	Glov_0265	-	von Willebrand factor type A
256	 53.37	0	242459..243022	+	187	189423338	-	Glov_0266	-	hypothetical protein
257	 53.70	0	243006..243275	+	89	189423339	-	Glov_0267	-	hypothetical protein
258	 56.08	0	243384..246737	+	1117	189423340	-	Glov_0268	-	type III restriction protein res subunit
259	 50.11	0	246820..247254	+	144	189423341	-	Glov_0269	-	hypothetical protein
260	 52.58	0	247251..247463	+	70	189423342	-	Glov_0270	-	hypothetical protein
261	 53.79	0	247548..248246	+	232	189423343	-	Glov_0271	-	hypothetical protein
262	 54.60	0	248248..248769	+	173	189423344	-	Glov_0272	-	hypothetical protein
263	 56.14	0	248855..249310	+	151	189423345	-	Glov_0273	-	hypothetical protein
264	 55.56	0	249346..249858	+	170	189423346	-	Glov_0274	-	zinc finger CHC2-family protein
265	 51.22	0	249940..250431	+	163	189423347	-	Glov_0275	-	DNA repair protein RadC
266	 50.00	0	250569..250706	+	45	189423348	-	Glov_0276	-	hypothetical protein
267	 50.56	0	250883..252409	+	508	189423349	-	Glov_0277	-	filamentation induced by cAMP protein Fic
268	 38.19	-2	252479..252952	-	157	189423350	-	Glov_0278	-	conserved hypothetical cytosolic protein
269	 39.16	-2	252965..253513	-	182	189423351	-	Glov_0279	-	Domain of unknown function DUF1863
270	 42.53	-2	253552..255573	-	673	189423352	-	Glov_0280	-	hypothetical protein
271	 50.76	0	255586..255849	-	87	189423353	-	Glov_0281	-	hypothetical protein
272	 42.14	-2	255976..256827	+	283	189423354	-	Glov_0282	-	hypothetical protein
273	 49.81	0	256832..257608	+	258	189423355	-	Glov_0283	-	YcgL
274	 54.67	0	257605..258096	+	163	189423356	-	Glov_0284	-	hypothetical protein
275	 53.47	0	258097..259293	+	398	189423357	-	Glov_0285	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
276	 52.06	0	259284..259769	-	161	189423358	-	Glov_0286	-	hypothetical protein
277	 57.30	0	259766..260854	-	362	189423359	-	Glov_0287	-	integrase domain protein SAM domain protein
278	 52.78	0	260847..261206	-	119	189423360	-	Glov_0288	-	hypothetical protein
279	 51.89	0	261286..261549	-	87	189423361	-	Glov_0289	-	WGR domain protein
280	 46.45	-1	261791..262636	-	281	189423362	-	Glov_0290	-	HNH endonuclease
281	 44.96	-1	262656..264272	-	538	189423363	-	Glov_0291	-	hypothetical protein
282	 43.90	-2	264287..264712	-	141	189423364	-	Glov_0292	-	hypothetical protein
283	 43.35	-2	264709..266634	-	641	189423365	-	Glov_0293	-	Non-specific serine/threonine protein kinase
284	 44.72	-1	266668..267879	-	403	189423366	-	Glov_0294	-	Restriction endonuclease EcoRII
285	 50.54	0	267954..268418	-	154	189423367	-	Glov_0295	-	DNA mismatch endonuclease Vsr
286	 46.00	-1	268418..268717	-	99	189423368	-	Glov_0296	-	hypothetical protein
287	 44.44	-2	268714..268947	-	77	189423369	-	Glov_0297	-	hypothetical protein
288	 47.04	-1	268959..270206	-	415	189423370	-	Glov_0298	-	DNA-cytosine methyltransferase
289	 39.50	-2	270776..272380	-	534	189423371	-	Glov_0300	-	hypothetical protein
290	 39.60	-2	272373..275357	-	994	189423372	-	Glov_0301	-	histidine kinase
291	 44.15	-2	275350..276477	-	375	189423373	-	Glov_0302	-	DNA-cytosine methyltransferase
292	 43.92	-2	276848..277225	+	125	189423374	-	Glov_0303	-	hypothetical protein
293	 40.43	-2	277204..277527	-	107	189423375	-	Glov_0304	-	hypothetical protein
294	 54.23	0	277531..281148	-	1205	189423376	-	Glov_0305	-	hypothetical protein
295	 50.88	0	281126..281866	-	246	189423377	-	Glov_0306	-	hypothetical protein
296	 57.14	0	281875..282126	-	83	189423378	-	Glov_0307	-	hypothetical protein
297	 51.92	0	282137..282631	-	164	189423379	-	Glov_0308	-	type IV secretory protease
298	 48.35	-1	282609..283001	-	130	189423380	-	Glov_0309	-	hypothetical protein
299	 52.65	0	283025..283987	-	320	189423381	-	Glov_0310	-	type-F conjugative transfer system pilin assembly protein TrbC
300	 55.82	0	283987..285009	-	340	189423382	-	Glov_0311	-	TraU family protein
301	 50.96	0	284993..285463	-	156	189423383	-	Glov_0312	-	hypothetical protein
302	 55.86	0	285460..286116	-	218	189423384	-	Glov_0313	-	conserved hypothetical cytosolic protein
303	 55.82	0	286113..289487	-	1124	189423385	-	Glov_0314	-	hypothetical protein
304	 55.49	0	289493..291496	-	667	189423386	-	Glov_0315	-	hypothetical protein
305	 52.70	0	291453..293900	-	815	189423387	-	Glov_0316	-	sex pilus assembly protein
306	 53.54	0	293903..294397	-	164	189423388	-	Glov_0317	-	hypothetical protein
307	 53.66	0	294394..295662	-	422	189423389	-	Glov_0318	-	TraB pilus assembly family protein
308	 49.05	-1	295652..296599	-	315	189423390	-	Glov_0319	-	hypothetical protein
309	 51.30	0	296599..297177	-	192	189423391	-	Glov_0320	-	conserved hypothetical sex pilus assembly and synthesis protein
310	 49.44	-1	297200..297466	-	88	189423392	-	Glov_0321	-	hypothetical protein
311	 57.33	0	297526..297825	-	99	189423393	-	Glov_0322	-	hypothetical protein
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.