IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1668	 56.43	0	1800661..1802115	+	484	189424750	-	Glov_1691	-	succinic semialdehyde dehydrogenase
1669	 48.72	-1	1802125..1802358	+	77	189424751	-	Glov_1692	-	hypothetical protein
1670	 53.10	0	1802355..1802693	+	112	189424752	-	Glov_1693	-	Dinitrogenase iron-molybdenum cofactor biosynthesis protein
1671	 56.31	0	1802717..1804135	+	472	189424753	-	Glov_1694	-	two component, sigma54 specific, transcriptional regulator, Fis family
1672	 55.64	0	1804122..1805744	+	540	189424754	-	Glov_1695	-	integral membrane sensor signal transduction histidine kinase
1673	 54.18	0	1805812..1806516	+	234	189424755	-	Glov_1696	-	Peroxiredoxin
1674	 49.79	0	1806893..1807135	+	80	189424756	-	Glov_1697	-	hypothetical protein
1675	 52.81	0	1807179..1807445	+	88	189424757	-	Glov_1698	-	hypothetical protein
1676	 50.19	0	1807567..1807833	+	88	189424758	-	Glov_1699	-	hypothetical protein
1677	 45.03	-1	1807846..1808016	+	56	189424759	-	Glov_1700	-	twin-arginine translocation protein, TatA/E family subunit
1678	 54.65	0	1808080..1808595	-	171	189424760	-	Glov_1701	-	hypothetical protein
1679	 50.76	0	1808661..1809515	-	284	189424761	-	Glov_1702	-	histidine kinase, HAMP region domain protein
1680	 51.97	0	1809608..1810621	-	337	189424762	-	Glov_1703	-	cytochrome c family protein
1681	 55.71	0	1810680..1812011	-	443	189424763	-	Glov_1704	-	polysulphide reductase-like protein
1682	 53.80	0	1812008..1812916	-	302	189424764	-	Glov_1705	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1683	 56.31	0	1812948..1813478	-	176	189424765	-	Glov_1706	-	hypothetical protein
1684	 46.33	-1	1813553..1813729	-	58	189424766	-	Glov_1707	-	hypothetical protein
1685	 51.18	0	1813796..1814176	-	126	189424767	-	Glov_1708	-	response regulator receiver protein
1686	 49.45	-1	1814206..1814571	-	121	189424768	-	Glov_1709	-	hypothetical protein
1687	 52.21	0	1814845..1816317	-	490	189424769	-	Glov_1710	-	cytochrome c family protein
1688	 54.27	0	1816342..1816809	-	155	189424770	-	Glov_1711	-	hypothetical protein
1689	 50.37	0	1816800..1817069	-	89	189424771	-	Glov_1712	-	hypothetical protein
1690	 44.44	-2	1817248..1817562	-	104	189424772	-	Glov_1713	-	hypothetical protein
1691	 43.50	-2	1817670..1817846	-	58	189424773	-	Glov_1714	-	hypothetical protein
1692	 55.81	0	1817870..1818136	-	88	189424774	-	Glov_1715	-	hypothetical protein
1693	 50.39	0	1818155..1818541	-	128	189424775	-	Glov_1716	-	response regulator receiver protein
1694	 49.22	-1	1818553..1818810	-	85	189424776	-	Glov_1717	-	hypothetical protein
1695	 53.72	0	1819086..1820498	-	470	189424777	-	Glov_1718	-	multi-sensor signal transduction histidine kinase
1696	 49.68	0	1820661..1822055	+	464	189424778	-	Glov_1719	-	cytochrome c, putative
1697	 54.92	0	1822219..1822533	+	104	189424779	-	Glov_1720	-	hypothetical protein
1698	 54.08	0	1822836..1826807	-	1323	189424780	-	Glov_1721	-	peptidase S8 and S53 subtilisin kexin sedolisin
1699	 50.66	0	1827347..1830370	+	1007	189424781	-	Glov_1722	-	multi-sensor hybrid histidine kinase
1700	 52.07	0	1830400..1831098	-	232	189424782	-	Glov_1723	-	hypothetical protein
1701	 56.93	0	1831227..1832222	-	331	189424783	-	Glov_1724	-	2-dehydropantoate 2-reductase
1702	 54.65	0	1832487..1833476	-	329	189424784	-	Glov_1725	-	O-methyltransferase family 2
1703	 53.67	0	1833745..1836390	+	881	189424785	-	Glov_1726	-	multi-sensor hybrid histidine kinase
1704	 55.66	0	1836460..1838067	-	535	189424786	-	Glov_1727	-	CTP synthase
1705	 53.36	0	1838106..1838864	-	252	189424787	-	Glov_1728	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
1706	 53.10	0	1838981..1840240	-	419	189424788	-	Glov_1729	-	diguanylate phosphodiesterase
1707	 56.43	0	1840265..1841329	-	354	189424789	-	Glov_1730	-	response regulator receiver modulated CheB methylesterase
1708	 52.35	0	1841334..1842206	-	290	189424790	-	Glov_1731	-	MCP methyltransferase, CheR-type
1709	 55.01	0	1842211..1842579	-	122	189424791	-	Glov_1732	-	response regulator receiver protein
1710	 55.06	0	1842611..1845082	-	823	189424792	-	Glov_1733	-	methyl-accepting chemotaxis sensory transducer
1711	 48.17	-1	1845105..1845596	-	163	189424793	-	Glov_1734	-	CheW protein
1712	 53.16	0	1845720..1848326	-	868	189424794	-	Glov_1735	-	methyl-accepting chemotaxis sensory transducer
1713	 52.09	0	1848358..1848954	-	198	189424795	-	Glov_1736	-	beta-lactamase domain protein
1714	 50.57	0	1848962..1849570	-	202	189424796	-	Glov_1737	-	MCP methyltransferase, CheR-type
1715	 55.49	0	1849570..1851699	-	709	189424797	-	Glov_1738	-	CheA signal transduction histidine kinase
1716	 53.83	0	1851781..1852146	-	121	189424798	-	Glov_1739	-	response regulator receiver protein
1717	 48.18	-1	1852148..1852504	-	118	189424799	-	Glov_1740	-	sulfate transporter/antisigma-factor antagonist STAS
1718	 53.07	0	1852520..1854313	-	597	189424800	-	Glov_1741	-	methyl-accepting chemotaxis sensory transducer
1719	 53.63	0	1854342..1854740	-	132	189424801	-	Glov_1742	-	response regulator receiver protein
1720	 51.80	0	1854753..1855223	-	156	189424802	-	Glov_1743	-	hypothetical protein
1721	 53.32	0	1855348..1856478	-	376	189424803	-	Glov_1744	-	response regulator receiver sensor signal transduction histidine kinase
1722	 53.11	0	1856475..1857728	-	417	189424804	-	Glov_1745	-	response regulator receiver sensor signal transduction histidine kinase
1723	 55.85	0	1857930..1859621	-	563	189424805	-	Glov_1746	-	PAS modulated sigma54 specific transcriptional regulator, Fis family
1724	 56.48	0	1859701..1860171	+	156	189424806	-	Glov_1747	-	CMP/dCMP deaminase zinc-binding
1725	 56.07	0	1860168..1860620	+	150	189424807	-	Glov_1748	-	ATP-cone domain protein
1726	 57.16	0	1860630..1861733	+	367	189424808	-	Glov_1749	-	riboflavin biosynthesis protein RibD
1727	 57.48	0	1861718..1862359	+	213	189424809	-	Glov_1750	-	riboflavin synthase, alpha subunit
1728	 55.89	0	1862377..1863582	+	401	189424810	-	Glov_1751	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1729	 56.63	0	1863582..1864109	+	175	189424811	-	Glov_1752	-	protein of unknown function DUF208
1730	 54.76	0	1864195..1864362	-	55	189424812	-	Glov_1753	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1731	 51.18	0	1864619..1865884	+	421	189424813	-	Glov_1754	-	acetate kinase
1732	 54.01	0	1865938..1866735	-	265	189424814	-	Glov_1755	-	TPR repeat-containing protein
1733	 50.38	0	1866874..1869219	+	781	189424815	-	Glov_1756	-	PTSINtr with GAF domain, PtsP
1734	 46.04	-1	1869317..1870111	-	264	189424816	-	Glov_1757	-	hypothetical protein
1735	 51.63	0	1870148..1871098	-	316	189424817	-	Glov_1758	-	hypothetical protein
1736	 54.44	0	1871288..1873732	+	814	189424818	-	Glov_1759	-	DNA internalization-related competence protein ComEC/Rec2
1737	 53.09	0	1873776..1875197	+	473	189424819	-	Glov_1760	-	response regulator receiver modulated diguanylate cyclase
1738	 55.87	0	1875194..1876453	+	419	189424820	-	Glov_1761	-	histidyl-tRNA synthetase
1739	 54.15	0	1876450..1878207	+	585	189424821	-	Glov_1762	-	Cytochrome bd-type quinol oxidase subunit 1-like protein
1740	 51.40	0	1878204..1879271	+	355	189424822	-	Glov_1763	-	hypothetical protein
1741	 52.49	0	1879417..1880883	+	488	189424823	-	Glov_1764	-	cytochrome c family protein
1742	 54.68	0	1880978..1881394	+	138	189424824	-	Glov_1765	-	hypothetical protein
1743	 51.31	0	1881407..1882552	-	381	189424825	-	Glov_1766	-	type IV pilus assembly PilZ
1744	 50.75	0	1882568..1882768	-	66	189424826	-	Glov_1767	-	hypothetical protein
1745	 55.67	0	1882824..1884023	-	399	189424827	-	Glov_1768	-	aminotransferase class I and II
1746	 48.48	-1	1884071..1884565	-	164	189424828	-	Glov_1769	-	pantetheine-phosphate adenylyltransferase
1747	 58.07	0	1884555..1885124	-	189	189424829	-	Glov_1770	-	methyltransferase
1748	 54.03	0	1885316..1886209	+	297	189424830	-	Glov_1771	-	metal dependent phosphohydrolase
1749	 53.29	0	1886236..1887558	-	440	189424831	-	Glov_1772	-	metal dependent phosphohydrolase
1750	 61.24	+1	1887732..1890128	+	798	189424832	-	Glov_1773	-	ATP-dependent helicase HrpB
1751	 58.10	0	1890139..1891644	+	501	189424833	-	Glov_1774	-	hypothetical protein
1752	 56.32	0	1891641..1892984	+	447	189424834	-	Glov_1775	-	deoxyribodipyrimidine photolyase
1753	 56.90	0	1892984..1894960	+	658	189424835	-	Glov_1776	-	sodium/hydrogen exchanger
1754	 55.91	0	1895051..1896082	+	343	189424836	-	Glov_1777	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1755	 52.25	0	1896082..1896747	+	221	189424837	-	Glov_1778	-	hypothetical protein
1756	 59.50	0	1897134..1899143	+	669	189424838	-	Glov_1779	-	anaerobic ribonucleoside-triphosphate reductase
1757	 54.80	0	1899157..1899333	+	58	189424839	-	Glov_1780	-	hypothetical protein
1758	 57.22	0	1899312..1899893	+	193	189424840	-	Glov_1781	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1759	 55.85	0	1900092..1900886	+	264	189424841	-	Glov_1782	-	hypothetical protein
1760	 53.54	0	1900916..1901677	-	253	189424842	-	Glov_1783	-	diguanylate cyclase
1761	 53.57	0	1901689..1901856	-	55	189424843	-	Glov_1784	-	hypothetical protein
1762	 55.84	0	1901914..1904055	-	713	189424844	-	Glov_1785	-	ferrous iron transport protein B
1763	 51.52	0	1904052..1904282	-	76	189424845	-	Glov_1786	-	FeoA family protein
1764	 55.56	0	1904279..1904575	-	98	189424846	-	Glov_1787	-	FeoA family protein
1765	 55.85	0	1904677..1905471	-	264	189424847	-	Glov_1788	-	hypothetical protein
1766	 42.86	-2	1905553..1905678	-	41	189424848	-	Glov_1789	-	hypothetical protein
1767	 51.62	0	1905680..1906018	-	112	189424849	-	Glov_1790	-	hypothetical protein
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.