IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1133	 55.78	0	1202908..1203210	-	100	189424215	-	Glov_1150	-	hypothetical protein
1134	 56.57	0	1203447..1204853	-	468	189424216	-	Glov_1151	-	two component, sigma54 specific, transcriptional regulator, Fis family
1135	 56.23	0	1204840..1206315	-	491	189424217	-	Glov_1152	-	integral membrane sensor signal transduction histidine kinase
1136	 57.02	0	1206312..1207223	-	303	189424218	-	Glov_1153	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1137	 58.19	0	1207270..1207611	+	113	189424219	-	Glov_1154	-	transcriptional regulator, ArsR family
1138	 57.35	0	1207715..1208755	+	346	189424220	-	Glov_1155	-	arsenical-resistance protein
1139	 53.29	0	1208947..1211526	+	859	189424221	-	Glov_1156	-	diguanylate cyclase/phosphodiesterase
1140	 61.95	+1	1211588..1212181	+	197	189424222	-	Glov_1157	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
1141	 59.57	0	1212181..1212687	+	168	189424223	-	Glov_1158	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1142	 61.03	+1	1212684..1213676	+	330	189424224	-	Glov_1159	-	molybdenum cofactor biosynthesis protein A
1143	 59.82	+1	1213681..1214469	+	262	189424225	-	Glov_1160	-	MOSC domain containing protein
1144	 48.36	-1	1214643..1215587	-	314	189424226	-	Glov_1161	-	Rhodanese domain protein
1145	 54.42	0	1215638..1216609	-	323	189424227	-	Glov_1162	-	Polysulphide reductase NrfD
1146	 59.14	0	1216622..1217179	-	185	189424228	-	Glov_1163	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1147	 56.91	0	1217181..1219373	-	730	189424229	-	Glov_1164	-	Formate dehydrogenase
1148	 55.66	0	1219441..1219767	-	108	189424230	-	Glov_1165	-	hypothetical protein
1149	 54.39	0	1219947..1221290	-	447	189424231	-	Glov_1166	-	two component, sigma54 specific, transcriptional regulator, Fis family
1150	 52.17	0	1221283..1222938	-	551	189424232	-	Glov_1167	-	PAS/PAC sensor signal transduction histidine kinase
1151	 52.11	0	1222935..1223195	-	86	189424233	-	Glov_1168	-	hypothetical protein
1152	 52.38	0	1223185..1224024	-	279	189424234	-	Glov_1169	-	protein of unknown function DUF323
1153	 50.86	0	1224069..1225175	-	368	189424235	-	Glov_1170	-	protein of unknown function DUF395 YeeE/YedE
1154	 52.19	0	1225351..1225647	-	98	189424236	-	Glov_1171	-	hypothetical protein
1155	 54.52	0	1225729..1226691	-	320	189424237	-	Glov_1172	-	cytochrome c family protein
1156	 57.80	0	1226769..1227050	-	93	189424238	-	Glov_1173	-	hypothetical protein
1157	 52.68	0	1227079..1227414	-	111	189424239	-	Glov_1174	-	hypothetical protein
1158	 53.13	0	1227474..1228943	-	489	189424240	-	Glov_1175	-	outer membrane porin FmdC, putative
1159	 52.35	0	1229111..1230004	+	297	189424241	-	Glov_1176	-	transcriptional regulator, LysR family
1160	 50.41	0	1230159..1231610	+	483	189424242	-	Glov_1177	-	cytochrome c family protein
1161	 54.32	0	1231787..1232734	+	315	189424243	-	Glov_1178	-	permease
1162	 53.99	0	1232742..1233017	+	91	189424244	-	Glov_1179	-	hypothetical protein
1163	 53.44	0	1233040..1233402	+	120	189424245	-	Glov_1180	-	heterodisulfide reductase subunit A and related polyferredoxins-like protein
1164	 50.53	0	1233415..1233699	+	94	189424246	-	Glov_1181	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1165	 54.05	0	1233820..1234128	+	102	189424247	-	Glov_1182	-	hypothetical protein
1166	 52.94	0	1234155..1234460	+	101	189424248	-	Glov_1183	-	hypothetical protein
1167	 53.95	0	1234464..1234691	+	75	189424249	-	Glov_1184	-	redox-active disulfide protein 2
1168	 51.06	0	1234691..1235068	+	125	189424250	-	Glov_1185	-	Thioredoxin domain
1169	 58.48	0	1235065..1235748	+	227	189424251	-	Glov_1186	-	cytochrome c biogenesis protein transmembrane region
1170	 55.14	0	1235789..1236760	+	323	189424252	-	Glov_1187	-	hypothetical protein
1171	 55.13	0	1236791..1237258	+	155	189424253	-	Glov_1188	-	Rhodanese domain protein
1172	 57.69	0	1237261..1237572	+	103	189424254	-	Glov_1189	-	transcriptional regulator, ArsR family
1173	 56.77	0	1237592..1238248	+	218	189424255	-	Glov_1190	-	Co/Zn/Cd cation transporter-like protein
1174	 59.68	+1	1238245..1239174	+	309	189424256	-	Glov_1191	-	cation diffusion facilitator family transporter
1175	 53.60	0	1239280..1240389	+	369	189424257	-	Glov_1192	-	transposase IS116/IS110/IS902 family protein
1176	 57.23	0	1240839..1240997	+	52	189424258	-	Glov_1193	-	hypothetical protein
1177	 59.87	+1	1241040..1241834	-	264	189424259	-	Glov_1194	-	hypothetical protein
1178	 59.37	0	1241810..1242220	-	136	189424260	-	Glov_1195	-	hypothetical protein
1179	 58.78	0	1242217..1242837	-	206	189424261	-	Glov_1196	-	Cytochrome b/b6 domain
1180	 64.63	+1	1242978..1243370	-	130	189424262	-	Glov_1197	-	Rieske (2Fe-2S) domain protein
1181	 60.38	+1	1243325..1244581	-	418	189424263	-	Glov_1198	-	hypothetical protein
1182	 59.37	0	1244535..1246397	-	620	189424264	-	Glov_1199	-	hypothetical protein
1183	 52.19	0	1246522..1246818	-	98	189424265	-	Glov_1200	-	hypothetical protein
1184	 55.07	0	1246900..1247865	-	321	189424266	-	Glov_1201	-	hypothetical protein
1185	 55.44	0	1247908..1248192	-	94	189424267	-	Glov_1202	-	hypothetical protein
1186	 54.70	0	1248231..1248581	-	116	189424268	-	Glov_1203	-	hypothetical protein
1187	 54.46	0	1248650..1249861	-	403	189424269	-	Glov_1204	-	phosphate-selective porin O and P
1188	 56.25	0	1249927..1251279	-	450	189424270	-	Glov_1205	-	rhodanese-like protein
1189	 54.81	0	1251605..1252498	+	297	189424271	-	Glov_1206	-	transcriptional regulator, LysR family
1190	 54.91	0	1252535..1253206	+	223	189424272	-	Glov_1207	-	exsB protein
1191	 50.56	0	1253590..1254936	+	448	189424273	-	Glov_1208	-	cytochrome bd ubiquinol oxidase subunit I
1192	 53.29	0	1254938..1255969	+	343	189424274	-	Glov_1209	-	cytochrome d ubiquinol oxidase, subunit II
1193	 59.28	0	1256052..1257053	-	333	189424275	-	Glov_1210	-	phosphate acetyltransferase
1194	 60.87	+1	1257177..1258367	-	396	189424276	-	Glov_1211	-	tryptophan synthase, beta subunit
1195	 58.25	0	1258367..1258984	-	205	189424277	-	Glov_1212	-	Phosphoribosylanthranilate isomerase
1196	 60.18	+1	1259051..1260406	-	451	189424278	-	Glov_1213	-	pyridoxal-phosphate dependent TrpB-like enzyme
1197	 57.20	0	1260564..1261883	-	439	189424279	-	Glov_1214	-	Homoserine dehydrogenase
1198	 59.21	0	1261880..1262308	-	142	189424280	-	Glov_1215	-	NusB antitermination factor
1199	 56.41	0	1262310..1262777	-	155	189424281	-	Glov_1216	-	6,7-dimethyl-8-ribityllumazine synthase
1200	 66.15	+2	1262881..1263264	-	127	189424282	-	Glov_1217	-	hypothetical protein
1201	 56.40	0	1263384..1264250	-	288	189424283	-	Glov_1218	-	nitrogenase iron protein
1202	 57.48	0	1264699..1265340	-	213	189424284	-	Glov_1219	-	hypothetical protein
1203	 59.53	0	1265443..1270557	-	1704	189424285	-	Glov_1220	-	alpha-2-macroglobulin domain protein
1204	 49.48	-1	1270711..1271001	+	96	189424286	-	Glov_1221	-	addiction module killer protein
1205	 50.17	0	1271011..1271307	+	98	189424287	-	Glov_1222	-	putative transcriptional regulator
1206	 39.74	-2	1271657..1272358	-	233	189424288	-	Glov_1223	-	hypothetical protein
1207	 45.07	-1	1272691..1273116	-	141	189424289	-	Glov_1224	-	PilT protein domain protein
1208	 43.21	-2	1273113..1273355	-	80	189424290	-	Glov_1225	-	hypothetical protein
1209	 58.54	0	1273431..1274021	-	196	189424291	-	Glov_1226	-	hypothetical protein
1210	 60.37	+1	1274018..1274779	-	253	189424292	-	Glov_1227	-	VanW family protein
1211	 58.01	0	1274831..1275973	-	380	189424293	-	Glov_1228	-	oxygen-independent coproporphyrinogen III oxidase
1212	 56.23	0	1276184..1276480	+	98	189424294	-	Glov_1229	-	cytochrome c class I
1213	 56.45	0	1276495..1276905	-	136	189424295	-	Glov_1230	-	hypothetical protein
1214	 51.85	0	1277082..1277270	-	62	189424296	-	Glov_1231	-	hypothetical protein
1215	 57.94	0	1277307..1277936	-	209	189424297	-	Glov_1232	-	transcriptional repressor, LexA family
1216	 54.05	0	1278383..1279492	+	369	189424298	-	Glov_1233	-	transposase IS116/IS110/IS902 family protein
1217	 61.75	+1	1280028..1281350	-	440	189424299	-	Glov_1234	-	Radical SAM domain protein
1218	 58.17	0	1281347..1283464	-	705	189424300	-	Glov_1235	-	Organic solvent tolerance protein
1219	 62.63	+1	1283464..1284750	-	428	189424301	-	Glov_1236	-	FolC bifunctional protein
1220	 57.36	0	1284753..1285601	-	282	189424302	-	Glov_1237	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
1221	 59.90	+1	1285626..1286423	-	265	189424303	-	Glov_1238	-	tryptophan synthase, alpha subunit
1222	 56.71	0	1286420..1288579	-	719	189424304	-	Glov_1239	-	methyl-accepting chemotaxis sensory transducer
1223	 56.14	0	1288876..1289559	-	227	189424305	-	Glov_1240	-	hypothetical protein
1224	 54.81	0	1289816..1290220	-	134	189424306	-	Glov_1241	-	transcriptional regulator, BadM/Rrf2 family
1225	 53.40	0	1290404..1291255	-	283	189424307	-	Glov_1242	-	Sec-independent protein translocase, TatC subunit
1226	 59.50	0	1291313..1293571	-	752	189424308	-	Glov_1243	-	ribonuclease R
1227	 53.33	0	1293785..1294159	-	124	189424309	-	Glov_1244	-	hypothetical protein
1228	 52.15	0	1294329..1295072	+	247	189424310	-	Glov_1245	-	protein of unknown function DUF28
1229	 55.34	0	1295116..1295583	+	155	189424311	-	Glov_1246	-	peptide methionine sulfoxide reductase
1230	 58.29	0	1295583..1296119	+	178	189424312	-	Glov_1247	-	crossover junction endodeoxyribonuclease RuvC
1231	 55.72	0	1296116..1296718	+	200	189424313	-	Glov_1248	-	Holliday junction DNA helicase RuvA
1232	 54.12	0	1296908..1297744	-	278	189424314	-	Glov_1249	-	hypothetical protein
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.