IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1090	 58.48	0	1159611..1159781	-	56	189424172	-	Glov_1107	-	hypothetical protein
1091	 55.99	0	1160004..1160462	+	152	189424173	-	Glov_1108	-	hypothetical protein
1092	 55.43	0	1160497..1162320	+	607	189424174	-	Glov_1109	-	Radical SAM domain protein
1093	 50.99	0	1162301..1162753	+	150	189424175	-	Glov_1110	-	hypothetical protein
1094	 60.02	+1	1162754..1163656	-	300	189424176	-	Glov_1111	-	pseudouridine synthase, RluA family
1095	 57.14	0	1163728..1164546	-	272	189424177	-	Glov_1112	-	hypothetical protein
1096	 60.22	+1	1164543..1165349	-	268	189424178	-	Glov_1113	-	hypothetical protein
1097	 52.04	0	1165519..1167207	+	562	189424179	-	Glov_1114	-	thiamine pyrophosphate protein TPP binding domain protein
1098	 51.98	0	1167277..1169394	+	705	189424180	-	Glov_1115	-	TonB-dependent receptor
1099	 54.21	0	1169410..1170324	+	304	189424181	-	Glov_1116	-	ABC-type uncharacterized transport system periplasmic component-like protein
1100	 51.84	0	1170338..1172650	+	770	189424182	-	Glov_1117	-	integral membrane sensor hybrid histidine kinase
1101	 52.02	0	1172647..1174005	+	452	189424183	-	Glov_1118	-	response regulator receiver sensor signal transduction histidine kinase
1102	 58.22	0	1174095..1174970	-	291	189424184	-	Glov_1119	-	ATP phosphoribosyltransferase
1103	 53.97	0	1174967..1175344	-	125	189424185	-	Glov_1120	-	Phosphoribosyl-AMP cyclohydrolase
1104	 58.00	0	1175506..1177179	+	557	189424186	-	Glov_1121	-	methyl-accepting chemotaxis sensory transducer
1105	 53.47	0	1177303..1177446	+	47	189424187	-	Glov_1122	-	hypothetical protein
1106	 49.77	0	1177668..1177880	-	70	189424188	-	Glov_1123	-	hypothetical protein
1107	 38.80	-2	1177877..1178242	-	121	189424189	-	Glov_1124	-	hypothetical protein
1108	 54.36	0	1178511..1180760	-	749	189424190	-	Glov_1125	-	hypothetical protein
1109	 51.85	0	1180790..1181383	-	197	189424191	-	Glov_1126	-	hypothetical protein
1110	 58.33	0	1181503..1181898	-	131	189424192	-	Glov_1127	-	hypothetical protein
1111	 59.60	0	1181895..1182092	-	65	189424193	-	Glov_1128	-	hypothetical protein
1112	 38.34	-2	1182200..1182958	+	252	189424194	-	Glov_1129	-	putative transcriptional regulator
1113	 51.52	0	1183157..1183486	-	109	189424195	-	Glov_1130	-	transcriptional regulator, XRE family
1114	 48.91	-1	1183493..1183858	-	121	189424196	-	Glov_1131	-	protein of unknown function DUF891
1115	 54.41	0	1183910..1184464	-	184	189424197	-	Glov_1132	-	Resolvase domain
1116	 53.91	0	1184727..1185071	-	114	189424198	-	Glov_1133	-	plasmid maintenance system antidote protein, XRE family
1117	 50.18	0	1185040..1185318	-	92	189424199	-	Glov_1134	-	conserved hypothetical cytosolic protein
1118	 52.73	0	1185368..1186630	-	420	189424200	-	Glov_1135	-	integrase family protein
1119	 56.19	0	1187067..1187801	-	244	189424201	-	Glov_1136	-	Sporulation domain protein
1120	 59.06	0	1187812..1189506	-	564	189424202	-	Glov_1137	-	arginyl-tRNA synthetase
1121	 51.98	0	1189503..1189679	-	58	189424203	-	Glov_1138	-	hypothetical protein
1122	 54.00	0	1189692..1189991	-	99	189424204	-	Glov_1139	-	Septum formation initiator
1123	 55.17	0	1189993..1190931	-	312	189424205	-	Glov_1140	-	NAD-dependent epimerase/dehydratase
1124	 39.30	-2	1191011..1191412	-	133	189424206	-	Glov_1141	-	hypothetical protein
1125	 56.86	0	1191445..1192800	-	451	189424207	-	Glov_1142	-	nucleotide sugar dehydrogenase
1126	 60.10	+1	1192828..1193664	-	278	189424208	-	Glov_1143	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
1127	 55.76	0	1193664..1194947	-	427	189424209	-	Glov_1144	-	N-acetylmuramoyl-L-alanine amidase
1128	 60.56	+1	1194944..1197562	-	872	189424210	-	Glov_1145	-	DNA mismatch repair protein MutS
1129	 57.03	0	1197896..1198819	-	307	189424211	-	Glov_1146	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1130	 57.12	0	1198812..1199450	-	212	189424212	-	Glov_1147	-	cytoplasmic chaperone TorD family protein
1131	 57.33	0	1199525..1200295	-	256	189424213	-	Glov_1148	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1132	 56.79	0	1200315..1202885	-	856	189424214	-	Glov_1149	-	molybdopterin oxidoreductase
1133	 55.78	0	1202908..1203210	-	100	189424215	-	Glov_1150	-	hypothetical protein
1134	 56.57	0	1203447..1204853	-	468	189424216	-	Glov_1151	-	two component, sigma54 specific, transcriptional regulator, Fis family
1135	 56.23	0	1204840..1206315	-	491	189424217	-	Glov_1152	-	integral membrane sensor signal transduction histidine kinase
1136	 57.02	0	1206312..1207223	-	303	189424218	-	Glov_1153	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1137	 58.19	0	1207270..1207611	+	113	189424219	-	Glov_1154	-	transcriptional regulator, ArsR family
1138	 57.35	0	1207715..1208755	+	346	189424220	-	Glov_1155	-	arsenical-resistance protein
1139	 53.29	0	1208947..1211526	+	859	189424221	-	Glov_1156	-	diguanylate cyclase/phosphodiesterase
1140	 61.95	+1	1211588..1212181	+	197	189424222	-	Glov_1157	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
1141	 59.57	0	1212181..1212687	+	168	189424223	-	Glov_1158	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1142	 61.03	+1	1212684..1213676	+	330	189424224	-	Glov_1159	-	molybdenum cofactor biosynthesis protein A
1143	 59.82	+1	1213681..1214469	+	262	189424225	-	Glov_1160	-	MOSC domain containing protein
1144	 48.36	-1	1214643..1215587	-	314	189424226	-	Glov_1161	-	Rhodanese domain protein
1145	 54.42	0	1215638..1216609	-	323	189424227	-	Glov_1162	-	Polysulphide reductase NrfD
1146	 59.14	0	1216622..1217179	-	185	189424228	-	Glov_1163	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1147	 56.91	0	1217181..1219373	-	730	189424229	-	Glov_1164	-	Formate dehydrogenase
1148	 55.66	0	1219441..1219767	-	108	189424230	-	Glov_1165	-	hypothetical protein
1149	 54.39	0	1219947..1221290	-	447	189424231	-	Glov_1166	-	two component, sigma54 specific, transcriptional regulator, Fis family
1150	 52.17	0	1221283..1222938	-	551	189424232	-	Glov_1167	-	PAS/PAC sensor signal transduction histidine kinase
1151	 52.11	0	1222935..1223195	-	86	189424233	-	Glov_1168	-	hypothetical protein
1152	 52.38	0	1223185..1224024	-	279	189424234	-	Glov_1169	-	protein of unknown function DUF323
1153	 50.86	0	1224069..1225175	-	368	189424235	-	Glov_1170	-	protein of unknown function DUF395 YeeE/YedE
1154	 52.19	0	1225351..1225647	-	98	189424236	-	Glov_1171	-	hypothetical protein
1155	 54.52	0	1225729..1226691	-	320	189424237	-	Glov_1172	-	cytochrome c family protein
1156	 57.80	0	1226769..1227050	-	93	189424238	-	Glov_1173	-	hypothetical protein
1157	 52.68	0	1227079..1227414	-	111	189424239	-	Glov_1174	-	hypothetical protein
1158	 53.13	0	1227474..1228943	-	489	189424240	-	Glov_1175	-	outer membrane porin FmdC, putative
1159	 52.35	0	1229111..1230004	+	297	189424241	-	Glov_1176	-	transcriptional regulator, LysR family
1160	 50.41	0	1230159..1231610	+	483	189424242	-	Glov_1177	-	cytochrome c family protein
1161	 54.32	0	1231787..1232734	+	315	189424243	-	Glov_1178	-	permease
1162	 53.99	0	1232742..1233017	+	91	189424244	-	Glov_1179	-	hypothetical protein
1163	 53.44	0	1233040..1233402	+	120	189424245	-	Glov_1180	-	heterodisulfide reductase subunit A and related polyferredoxins-like protein
1164	 50.53	0	1233415..1233699	+	94	189424246	-	Glov_1181	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1165	 54.05	0	1233820..1234128	+	102	189424247	-	Glov_1182	-	hypothetical protein
1166	 52.94	0	1234155..1234460	+	101	189424248	-	Glov_1183	-	hypothetical protein
1167	 53.95	0	1234464..1234691	+	75	189424249	-	Glov_1184	-	redox-active disulfide protein 2
1168	 51.06	0	1234691..1235068	+	125	189424250	-	Glov_1185	-	Thioredoxin domain
1169	 58.48	0	1235065..1235748	+	227	189424251	-	Glov_1186	-	cytochrome c biogenesis protein transmembrane region
1170	 55.14	0	1235789..1236760	+	323	189424252	-	Glov_1187	-	hypothetical protein
1171	 55.13	0	1236791..1237258	+	155	189424253	-	Glov_1188	-	Rhodanese domain protein
1172	 57.69	0	1237261..1237572	+	103	189424254	-	Glov_1189	-	transcriptional regulator, ArsR family
1173	 56.77	0	1237592..1238248	+	218	189424255	-	Glov_1190	-	Co/Zn/Cd cation transporter-like protein
1174	 59.68	+1	1238245..1239174	+	309	189424256	-	Glov_1191	-	cation diffusion facilitator family transporter
1175	 53.60	0	1239280..1240389	+	369	189424257	-	Glov_1192	-	transposase IS116/IS110/IS902 family protein
1176	 57.23	0	1240839..1240997	+	52	189424258	-	Glov_1193	-	hypothetical protein
1177	 59.87	+1	1241040..1241834	-	264	189424259	-	Glov_1194	-	hypothetical protein
1178	 59.37	0	1241810..1242220	-	136	189424260	-	Glov_1195	-	hypothetical protein
1179	 58.78	0	1242217..1242837	-	206	189424261	-	Glov_1196	-	Cytochrome b/b6 domain
1180	 64.63	+1	1242978..1243370	-	130	189424262	-	Glov_1197	-	Rieske (2Fe-2S) domain protein
1181	 60.38	+1	1243325..1244581	-	418	189424263	-	Glov_1198	-	hypothetical protein
1182	 59.37	0	1244535..1246397	-	620	189424264	-	Glov_1199	-	hypothetical protein
1183	 52.19	0	1246522..1246818	-	98	189424265	-	Glov_1200	-	hypothetical protein
1184	 55.07	0	1246900..1247865	-	321	189424266	-	Glov_1201	-	hypothetical protein
1185	 55.44	0	1247908..1248192	-	94	189424267	-	Glov_1202	-	hypothetical protein
1186	 54.70	0	1248231..1248581	-	116	189424268	-	Glov_1203	-	hypothetical protein
1187	 54.46	0	1248650..1249861	-	403	189424269	-	Glov_1204	-	phosphate-selective porin O and P
1188	 56.25	0	1249927..1251279	-	450	189424270	-	Glov_1205	-	rhodanese-like protein
1189	 54.81	0	1251605..1252498	+	297	189424271	-	Glov_1206	-	transcriptional regulator, LysR family
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.