IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
932	 29.35	-1	1253537..1254439	+	300	187931844	lplA	FTM_1168	-	lipoate-protein ligase A
933	 28.53	-1	1254442..1255191	-	249	187931845	-	FTM_1169	-	hypothetical membrane protein
934	 34.78	0	1255383..1255934	+	183	187931846	hslV	FTM_1170	-	ATP-dependent protease HslV, peptidase subunit
935	 35.38	0	1255942..1257309	+	455	187931847	hslU	FTM_1171	-	ATP-dependent protease HslVU, ATPase subunit
936	 26.60	-1	1258943..1260100	+	385	187931848	-	FTM_1173	-	potassium channel protein
937	 34.55	0	1260196..1261596	+	466	187931849	udhA	FTM_1174	-	soluble pyridine nucleotide transhydrogenase (STH)(NAD(P)(+) transhydrogenase [B-specific])
938	 32.70	0	1261627..1262418	+	263	187931850	pilD	FTM_1175	-	Type IV pili leader peptidase and methylase
939	 31.91	0	1262458..1263303	+	281	187931851	-	FTM_1176	-	hypothetical protein
940	 30.73	0	1263312..1264196	+	294	187931852	blaA	FTM_1177	-	beta-lactamase class A
941	 32.47	0	1264189..1264764	+	191	187931853	pth	FTM_1178	-	peptidyl-tRNA hydrolase
942	 35.16	0	1264783..1265874	+	363	187931854	ychF	FTM_1179	-	GTP-binding protein YchF
943	 28.26	-1	1265889..1266164	+	91	187931855	-	FTM_1180	-	lipoprotein, putative
944	 30.79	0	1267754..1269013	-	419	187931856	-	FTM_1182	-	transporter-associated protein, HlyC/CorC family
945	 36.08	0	1269109..1269399	-	96	187931857	rplY	FTM_1183	-	50S ribosomal L25p family
946	 36.33	+1	1269499..1270467	-	322	187931858	prsA	FTM_1184	-	ribose-phosphate pyrophosphokinase
947	 30.52	0	1272968..1274245	-	425	187931859	-	FTM_1187	-	major facilitator superfamily
948	 32.40	0	1275356..1276531	-	391	187931860	-	FTM_1189	-	monovalent cation:proton antiporter family protein
949	 29.54	0	1276629..1277261	-	210	187931861	-	FTM_1190	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
950	 30.75	0	1277261..1277764	-	167	187931862	-	FTM_1191	-	isochorismatase family protein
951	 30.04	0	1278565..1279263	+	232	187931863	-	FTM_1193	-	aldolase/adducin class II family protein
952	 28.41	-1	1279278..1280414	+	378	187931864	hdc	FTM_1194	-	histidine decarboxylase
953	 28.41	-1	1280401..1281213	-	270	187931865	-	FTM_1195	-	hypothetical protein
954	 34.34	0	1281869..1282165	+	98	187931866	-	FTM_1197	-	hypothetical protein
955	 31.29	0	1282187..1282774	-	195	187931867	-	FTM_1198	-	hypothetical membrane protein
956	 30.44	0	1282823..1284238	-	471	187931868	-	FTM_1199	-	DNA recombination protein RmuC family protein
957	 33.03	0	1284264..1284914	-	216	187931869	ruvA	FTM_1200	-	holliday junction DNA helicase, subunit A
958	 31.16	0	1284927..1286120	-	397	187931870	-	FTM_1201	-	sugar transporter, MFS superfamily
959	 37.21	+1	1286202..1286717	-	171	187931871	ruvC	FTM_1202	-	crossover junction endodeoxyribonuclease RuvC
960	 37.62	+1	1286814..1287560	-	248	187931872	-	FTM_1203	-	hypothetical protein
961	 36.36	+1	1287576..1288235	-	219	187931873	-	FTM_1204	-	hypothetical protein
962	 35.26	0	1288265..1289248	-	327	187931874	lipA	FTM_1205	-	lipoic acid synthetase
963	 32.53	0	1289455..1289955	+	166	187931875	ftnA	FTM_1206	-	ferric iron binding protein, ferritin-like protein
964	 28.62	-1	1289958..1291526	-	522	187931876	-	FTM_1207	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
965	 29.61	0	1291588..1292232	+	214	187931877	grxB	FTM_1208	-	glutaredoxin 2
966	 33.02	0	1292234..1292863	+	209	187931878	rnfB	FTM_1209	-	iron-sulfur cluster-binding protein
967	 33.49	0	1292856..1293494	+	212	187931879	nth	FTM_1210	-	endonuclease III
968	 32.40	0	1293491..1293919	+	142	187931880	-	FTM_1211	-	hypothetical protein
969	 25.87	-2	1293919..1295178	+	419	187931881	-	FTM_1212	-	hypothetical membrane protein
970	 33.48	0	1295294..1295980	+	228	187931882	-	FTM_1213	-	hypothetical protein
971	 30.56	0	1296025..1299450	+	1141	187931883	mfd	FTM_1214	-	transcription-repair coupling factor
972	 28.93	-1	1300644..1300961	-	105	187931884	ilvN	FTM_1216	-	acetolactate synthase, small subunit
973	 37.31	+1	1302806..1304488	-	560	187931885	ilvD	FTM_1218	-	dihydroxy-acid dehydratase
974	 35.53	0	1307899..1308126	+	75	187931886	-	FTM_1220	-	transcriptional regulator
975	 30.61	0	1308129..1309487	+	452	187931887	-	FTM_1221	-	transcription regulator
976	 37.39	+1	1309509..1310690	-	393	187931888	-	FTM_1222	-	hypothetical protein
977	 38.70	+1	1310705..1310965	-	86	187931889	-	FTM_1223	-	hypothetical protein
978	 30.62	0	1313317..1313574	-	85	187931890	-	FTM_1227	-	hypothetical protein
979	 29.62	0	1313579..1314439	-	286	187931891	rdgC	FTM_1228	-	recombination associated protein
980	 33.74	0	1314629..1315615	+	328	187931892	-	FTM_1229	-	putative rhodanese, sulfurtransferase
981	 31.50	0	1316632..1318647	-	671	187931893	rep	FTM_1231	-	UvrD/REP superfamily I DNA and RNA helicase
982	 31.06	0	1318641..1319387	-	248	187931894	-	FTM_1232	-	hypothetical protein
983	 25.40	-2	1320009..1320512	+	167	187931895	-	FTM_1233	-	isochorismatase hydrolase family protein
984	 25.36	-2	1321200..1321688	+	162	187931896	-	FTM_1235	-	isochorismatase hydrolase family protein
985	 31.59	0	1321838..1322296	-	152	187931897	-	FTM_1236	-	hypothetical protein
986	 32.51	0	1322319..1323284	-	321	187931898	talA	FTM_1237	-	transaldolase
987	 34.49	0	1323422..1324801	-	459	187931899	pepB	FTM_1238	-	cytosol aminopeptidase
988	 32.97	0	1324804..1326186	-	460	187931900	-	FTM_1239	-	putative outer membrane efflux protein
989	 34.37	0	1326194..1328791	-	865	187931901	alaS	FTM_1240	-	alanyl-tRNA synthetase
990	 34.00	0	1328947..1329393	+	148	187931902	-	FTM_1241	-	hypothetical protein
991	 26.49	-1	1331481..1331816	-	111	187931903	-	FTM_1243	-	hypothetical protein
992	 27.94	-1	1331847..1332254	+	135	187931904	-	FTM_1244	-	hypothetical protein
993	 36.27	+1	1333741..1334862	+	373	187931905	-	FTM_1247	-	protein-disulfide isomerase
994	 33.22	0	1336311..1337165	-	284	187931906	-	FTM_1249	-	peptide methionine sulfoxide reductase
995	 34.31	0	1337762..1339714	-	650	187931907	betT	FTM_1251	-	betaine/carnitine/choline transporter (BCCT) family protein
996	 35.19	0	1339856..1340608	+	250	187931908	spoU	FTM_1252	-	rRNA methyltransferase
997	 32.91	0	1340702..1341649	+	315	187931909	-	FTM_1253	-	choloylglycine hydrolase family protein
998	 38.98	+1	1341814..1342167	+	117	187931910	-	FTM_1254	-	hypothetical protein
999	 30.27	0	1343989..1344282	-	97	187931911	-	FTM_1256	-	hypothetical protein
1000	 37.57	+1	1350948..1352126	-	392	187931912	fopA	FTM_1261	-	outer membrane protein FopA
1001	 33.74	0	1352236..1352481	-	81	187931913	-	FTM_1262	-	4Fe-4S ferredoxin
1002	 32.72	0	1352486..1352974	-	162	187931914	coaD	FTM_1263	-	phosphopantetheine adenylyltransferase
1003	 33.88	0	1352986..1353537	-	183	187931915	-	FTM_1264	-	hypothetical protein
1004	 33.33	0	1353551..1353907	-	118	187931916	-	FTM_1265	-	hypothetical protein
1005	 34.48	0	1353928..1355151	-	407	187931917	sufS	FTM_1266	-	selenocysteine lyase
1006	 35.88	0	1355254..1356627	-	457	187931918	sdaA	FTM_1267	-	L-serine dehydratase
1007	 26.91	-1	1356683..1357351	-	222	187931919	-	FTM_1268	-	predicted metal-dependent hydrolase
1008	 31.20	0	1357377..1358219	-	280	187931920	pheA	FTM_1269	-	prephenate dehydratase
1009	 32.24	0	1359994..1361091	-	365	187931921	alr	FTM_1271	-	alanine racemase
1010	 30.92	0	1361104..1362597	-	497	187931922	-	FTM_1272	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1011	 31.50	0	1362722..1363429	-	235	187931923	-	FTM_1273	-	hypothetical protein
1012	 30.05	0	1363441..1363836	-	131	187931924	-	FTM_1274	-	hypothetical protein
1013	 32.36	0	1363923..1364945	+	340	187931925	-	FTM_1275	-	integral membrane protein
1014	 30.72	0	1364934..1365584	-	216	187931926	serB	FTM_1276	-	phosphoserine phosphatase
1015	 31.00	0	1366198..1367655	+	485	187931927	-	FTM_1277	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1016	 30.68	0	1367784..1368047	-	87	187931928	-	FTM_1278	-	hypothetical protein
1017	 35.49	0	1368983..1369861	-	292	187931929	rpoH	FTM_1279	-	RNA polymerase sigma-32 factor
1018	 33.74	0	1369885..1370373	-	162	187931930	-	FTM_1280	-	hypothetical protein
1019	 32.70	0	1370447..1371391	-	314	187931931	secF	FTM_1281	-	preprotein translocase, subunit F, membrane protein
1020	 35.35	0	1371410..1373347	-	645	187931932	secD	FTM_1282	-	preprotein translocase, subunit D, membrane protein
1021	 34.45	0	1373404..1373760	-	118	187931933	yajC	FTM_1283	-	preprotein translocase, YajC subunit
1022	 35.08	0	1374316..1374888	-	190	187931934	-	FTM_1284	-	isochorismatase hydrolase family protein
1023	 37.05	+1	1376739..1377842	-	367	187931935	tgt	FTM_1287	-	queuine tRNA-ribosyltransferase
1024	 39.70	+2	1378825..1379091	-	88	187931936	-	FTM_1289	-	hypothetical protein
1025	 37.43	+1	1379247..1379588	-	113	187931937	-	FTM_1290	-	hypothetical protein
1026	 34.15	0	1380224..1380838	+	204	187931938	-	FTM_1291	-	hypothetical protein
1027	 34.76	0	1381854..1383326	+	490	187931939	metIQ	FTM_1293	-	methionine uptake transporter (MUT) family protein, membrane and periplasmic protein
1028	 28.30	-1	1383397..1384608	+	403	187931940	-	FTM_1294	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
1029	 33.86	0	1384683..1385438	+	251	187931941	-	FTM_1295	-	rhodanese-like family protein
1030	 31.67	0	1385445..1385924	+	159	187931942	ispF	FTM_1296	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1031	 34.46	0	1385929..1387614	-	561	187931943	-	FTM_1297	-	Mur ligase family protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.