IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
869	 30.30	0	1167438..1167932	+	164	187931781	-	FTM_1089	-	hypothetical protein
870	 23.96	-2	1167937..1169601	+	554	187931782	-	FTM_1090	-	hypothetical protein
871	 33.52	0	1169669..1170190	+	173	187931783	-	FTM_1091	-	hypothetical protein
872	 26.28	-1	1170203..1171633	+	476	187931784	-	FTM_1092	-	hypothetical protein
873	 28.16	-1	1171646..1172263	+	205	187931785	-	FTM_1093	-	hypothetical protein
874	 26.13	-1	1172285..1173436	+	383	187931786	-	FTM_1094	-	hypothetical protein
875	 23.39	-2	1173402..1174175	+	257	187931787	-	FTM_1095	-	hypothetical protein
876	 26.51	-1	1174215..1178201	+	1328	187931788	pdpC1	FTM_1096	-	PdpC
877	 24.83	-2	1178219..1178794	+	191	187931789	-	FTM_1097	-	hypothetical protein
878	 29.32	-1	1178801..1179997	-	398	187931790	iglD1	FTM_1098	-	intracellular growth locus protein D
879	 34.76	0	1180018..1180647	-	209	187931791	iglC1	FTM_1099	-	intracellular growth locus C protein
880	 31.23	0	1180664..1182184	-	506	187931792	iglB1	FTM_1100	-	intracellular growth locus protein B
881	 31.71	0	1182198..1182752	-	184	187931793	iglA1	FTM_1101	-	intracellular growth locus protein A
882	 30.04	0	1182833..1186564	-	1243	187931794	pdpD1	FTM_1102	-	hypothetical protein
883	 32.11	0	1186795..1187778	-	327	187931795	-	FTM_1103	-	hypothetical protein
884	 29.55	0	1190083..1190505	-	140	187931796	-	FTM_1106	-	lipoprotein, putative
885	 34.53	0	1190609..1191358	-	249	187931797	nadE	FTM_1107	-	NAD+ synthetase
886	 34.49	0	1191487..1192959	-	490	187931798	-	FTM_1108	-	outer membrane efflux protein
887	 33.14	0	1192969..1193991	-	340	187931799	-	FTM_1109	-	membrane fusion protein
888	 33.92	0	1194013..1195542	-	509	187931800	-	FTM_1110	-	drug:H+ antiporter-1 (DHA2) family protein
889	 37.08	+1	1195707..1196534	+	275	187931801	-	FTM_1111	-	transcriptional regulator AraC family protein
890	 32.51	0	1196522..1198213	-	563	187931802	-	FTM_1112	-	long chain fatty acid CoA ligase
891	 33.47	0	1198321..1199802	-	493	187931803	-	FTM_1113	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
892	 26.89	-1	1200039..1200767	-	242	187931804	-	FTM_1114	-	hypothetical protein
893	 32.31	0	1200838..1201524	+	228	187931805	-	FTM_1115	-	hypothetical protein
894	 27.61	-1	1201514..1202212	-	232	187931806	-	FTM_1116	-	hypothetical protein
895	 28.93	-1	1202217..1202942	-	241	187931807	-	FTM_1117	-	hypothetical protein
896	 31.89	0	1202952..1203713	-	253	187931808	-	FTM_1118	-	ATP-binding Cassette (ABC) superfamily protein
897	 31.70	0	1203728..1204828	-	366	187931809	-	FTM_1119	-	ABC-type transport system permease protein
898	 35.14	0	1205693..1206691	-	332	187931810	rluD	FTM_1121	-	ribosomal large subunit pseudouridine synthase D
899	 33.21	0	1206780..1207604	+	274	187931811	comL	FTM_1122	-	competence lipoprotein ComL
900	 30.86	0	1209114..1210166	+	350	187931812	serC	FTM_1125	-	phosphoserine aminotransferase
901	 32.88	0	1210153..1210818	+	221	187931813	cmk	FTM_1126	-	cytidylate kinase
902	 32.52	0	1210835..1211446	-	203	187931814	-	FTM_1127	-	short chain dehydrogenase
903	 32.76	0	1211449..1211973	-	174	187931815	-	FTM_1128	-	peroxiredoxin, AhpC-TSA family protein
904	 30.34	0	1212071..1212940	+	289	187931816	oxyR	FTM_1129	-	oxidative stress transcriptional regulator
905	 29.78	0	1212943..1213674	-	243	187931817	-	FTM_1130	-	hypothetical protein
906	 30.04	0	1213688..1213960	-	90	187931818	-	FTM_1131	-	hypothetical protein
907	 31.28	0	1214029..1214808	-	259	187931819	-	FTM_1132	-	hypothetical protein
908	 31.21	0	1217739..1219148	-	469	187931820	-	FTM_1135	-	hypothetical protein
909	 33.54	0	1219135..1219608	-	157	187931821	vanY	FTM_1136	-	D-alanyl-D-alanine carboxypeptidase
910	 31.02	0	1219602..1220294	-	230	187931822	dnaQ	FTM_1137	-	DNA polymerase III, epsilon subunit
911	 28.24	-1	1221840..1222055	-	71	187931823	-	FTM_1139	-	hypothetical membrane protein
912	 32.96	0	1222061..1222330	-	89	187931824	phnA	FTM_1140	-	phosphonoacetate hydrolase
913	 36.83	+1	1223940..1224539	-	199	187931825	-	FTM_1142	-	peroxiredoxin of the AhpC/TSA family
914	 30.76	0	1224631..1225212	+	193	187931826	-	FTM_1143	-	haloacid dehalogenase-like hydrolase
915	 31.07	0	1225265..1226767	+	500	187931827	-	FTM_1144	-	hypothetical protein
916	 32.92	0	1227585..1228070	+	161	187931828	-	FTM_1146	-	hypothetical protein
917	 36.79	+1	1228163..1228798	-	211	187931829	-	FTM_1147	-	ubiquinone biosynthesis protein
918	 29.82	0	1228814..1229326	-	170	187931830	-	FTM_1148	-	major facilitator superfamily (MFS) transport protein
919	 36.15	0	1229477..1230436	+	319	187931831	mdh	FTM_1149	-	malate dehydrogenase, NAD-dependent
920	 36.04	0	1230640..1232412	+	590	187931832	nrdA	FTM_1150	-	ribonucleoside-diphosphate reductase, alpha subunit
921	 29.12	-1	1232416..1232676	+	86	187931833	grxA	FTM_1151	-	glutaredoxin 1
922	 35.28	0	1232683..1233915	+	410	187931834	-	FTM_1152	-	bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta subunit
923	 32.50	0	1235914..1236516	+	200	187931835	-	FTM_1154	-	DJ-1/PfpI family protein
924	 33.14	0	1236523..1237572	+	349	187931836	-	FTM_1155	-	DNA-damage inducible protein P
925	 25.72	-2	1239028..1239684	-	218	187931837	-	FTM_1158	-	hypothetical protein
926	 30.99	0	1241193..1243280	-	695	187931838	-	FTM_1161	-	N-6 DNA Methylase family
927	 37.70	+1	1243510..1244493	-	327	187931839	-	FTM_1162	-	tRNA-dihydrouridine synthase
928	 31.56	0	1244483..1245328	-	281	187931840	prmA	FTM_1163	-	50S ribosomal protein L11 methyltransferase
929	 31.43	0	1245551..1246708	-	385	187931841	yghD	FTM_1164	-	Fe-dependent alcohol dehydrogenase YqhD
930	 32.46	0	1249841..1250983	-	380	187931842	lldD	FTM_1166	-	L-lactate dehydrogenase
931	 34.59	0	1252233..1253423	-	396	187931843	tyrS	FTM_1167	-	tyrosyl-tRNA synthetase
932	 29.35	-1	1253537..1254439	+	300	187931844	lplA	FTM_1168	-	lipoate-protein ligase A
933	 28.53	-1	1254442..1255191	-	249	187931845	-	FTM_1169	-	hypothetical membrane protein
934	 34.78	0	1255383..1255934	+	183	187931846	hslV	FTM_1170	-	ATP-dependent protease HslV, peptidase subunit
935	 35.38	0	1255942..1257309	+	455	187931847	hslU	FTM_1171	-	ATP-dependent protease HslVU, ATPase subunit
936	 26.60	-1	1258943..1260100	+	385	187931848	-	FTM_1173	-	potassium channel protein
937	 34.55	0	1260196..1261596	+	466	187931849	udhA	FTM_1174	-	soluble pyridine nucleotide transhydrogenase (STH)(NAD(P)(+) transhydrogenase [B-specific])
938	 32.70	0	1261627..1262418	+	263	187931850	pilD	FTM_1175	-	Type IV pili leader peptidase and methylase
939	 31.91	0	1262458..1263303	+	281	187931851	-	FTM_1176	-	hypothetical protein
940	 30.73	0	1263312..1264196	+	294	187931852	blaA	FTM_1177	-	beta-lactamase class A
941	 32.47	0	1264189..1264764	+	191	187931853	pth	FTM_1178	-	peptidyl-tRNA hydrolase
942	 35.16	0	1264783..1265874	+	363	187931854	ychF	FTM_1179	-	GTP-binding protein YchF
943	 28.26	-1	1265889..1266164	+	91	187931855	-	FTM_1180	-	lipoprotein, putative
944	 30.79	0	1267754..1269013	-	419	187931856	-	FTM_1182	-	transporter-associated protein, HlyC/CorC family
945	 36.08	0	1269109..1269399	-	96	187931857	rplY	FTM_1183	-	50S ribosomal L25p family
946	 36.33	+1	1269499..1270467	-	322	187931858	prsA	FTM_1184	-	ribose-phosphate pyrophosphokinase
947	 30.52	0	1272968..1274245	-	425	187931859	-	FTM_1187	-	major facilitator superfamily
948	 32.40	0	1275356..1276531	-	391	187931860	-	FTM_1189	-	monovalent cation:proton antiporter family protein
949	 29.54	0	1276629..1277261	-	210	187931861	-	FTM_1190	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
950	 30.75	0	1277261..1277764	-	167	187931862	-	FTM_1191	-	isochorismatase family protein
951	 30.04	0	1278565..1279263	+	232	187931863	-	FTM_1193	-	aldolase/adducin class II family protein
952	 28.41	-1	1279278..1280414	+	378	187931864	hdc	FTM_1194	-	histidine decarboxylase
953	 28.41	-1	1280401..1281213	-	270	187931865	-	FTM_1195	-	hypothetical protein
954	 34.34	0	1281869..1282165	+	98	187931866	-	FTM_1197	-	hypothetical protein
955	 31.29	0	1282187..1282774	-	195	187931867	-	FTM_1198	-	hypothetical membrane protein
956	 30.44	0	1282823..1284238	-	471	187931868	-	FTM_1199	-	DNA recombination protein RmuC family protein
957	 33.03	0	1284264..1284914	-	216	187931869	ruvA	FTM_1200	-	holliday junction DNA helicase, subunit A
958	 31.16	0	1284927..1286120	-	397	187931870	-	FTM_1201	-	sugar transporter, MFS superfamily
959	 37.21	+1	1286202..1286717	-	171	187931871	ruvC	FTM_1202	-	crossover junction endodeoxyribonuclease RuvC
960	 37.62	+1	1286814..1287560	-	248	187931872	-	FTM_1203	-	hypothetical protein
961	 36.36	+1	1287576..1288235	-	219	187931873	-	FTM_1204	-	hypothetical protein
962	 35.26	0	1288265..1289248	-	327	187931874	lipA	FTM_1205	-	lipoic acid synthetase
963	 32.53	0	1289455..1289955	+	166	187931875	ftnA	FTM_1206	-	ferric iron binding protein, ferritin-like protein
964	 28.62	-1	1289958..1291526	-	522	187931876	-	FTM_1207	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
965	 29.61	0	1291588..1292232	+	214	187931877	grxB	FTM_1208	-	glutaredoxin 2
966	 33.02	0	1292234..1292863	+	209	187931878	rnfB	FTM_1209	-	iron-sulfur cluster-binding protein
967	 33.49	0	1292856..1293494	+	212	187931879	nth	FTM_1210	-	endonuclease III
968	 32.40	0	1293491..1293919	+	142	187931880	-	FTM_1211	-	hypothetical protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.