IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.84   STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
761	 32.68	0	1031631..1032848	+	405	187931674	-	FTM_0949	-	hypothetical protein
762	 31.86	0	1032851..1033597	+	248	187931675	-	FTM_0950	-	zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein
763	 29.80	0	1033619..1034608	-	329	187931676	-	FTM_0951	-	lipoprotein, putative
764	 29.21	-1	1034777..1036207	-	476	187931677	cls	FTM_0952	-	cardiolipin synthetase
765	 32.40	0	1039091..1039951	+	286	187931678	-	FTM_0955	-	Mrp-like protein
766	 31.92	0	1039963..1040529	+	188	187931679	dcd	FTM_0956	-	deoxycytidine triphosphate deaminase
767	 28.80	-1	1040536..1041726	-	396	187931680	-	FTM_0957	-	small conductance mechanosensitive ion channel (MscS) family protein
768	 31.08	0	1041786..1042361	-	191	187931681	-	FTM_0958	-	rare lipoprotein B family protein
769	 33.01	0	1042369..1044810	-	813	187931682	leuS	FTM_0959	-	leucyl-tRNA synthetase
770	 26.11	-1	1044918..1046813	-	631	187931683	-	FTM_0960	-	hypothetical protein
771	 34.79	0	1047602..1048012	-	136	187931684	-	FTM_0962	-	hypothetical protein
772	 30.77	0	1048014..1048598	-	194	187931685	-	FTM_0963	-	hypothetical protein
773	 23.66	-2	1049234..1049605	-	123	187931686	-	FTM_0965	-	hypothetical protein
774	 24.76	-2	1050622..1051788	-	388	187931687	-	FTM_0967	-	hypothetical protein
775	 29.67	0	1052133..1053362	-	409	187931688	-	FTM_0968	-	hypothetical protein
776	 30.14	0	1053584..1054963	+	459	187931689	-	FTM_0969	-	amino acid transporter (AAT) family protein
777	 24.09	-2	1055005..1055610	+	201	187931690	-	FTM_0970	-	hypothetical membrane protein
778	 28.57	-1	1055614..1055907	+	97	187931691	-	FTM_0971	-	transcriptional regulator, MarR family
779	 31.50	0	1056304..1056630	-	108	187931692	trxA2	FTM_0972	-	thioredoxin
780	 28.70	-1	1056634..1057323	-	229	187931693	-	FTM_0973	-	lipoprotein, putative
781	 29.06	-1	1058279..1059424	-	381	187931694	sufD	FTM_0975	-	SufS activator complex, sufD subunit
782	 33.07	0	1059437..1060186	-	249	187931695	sufC	FTM_0976	-	sufS activator complex, sufC subunit
783	 36.31	+1	1060229..1061671	-	480	187931696	sufB	FTM_0977	-	sufS activator complex, sufB subunit
784	 32.36	0	1061678..1062088	-	136	187931697	-	FTM_0978	-	FeS assembly SUF system regulator
785	 30.49	0	1062241..1063614	+	457	187931698	trkA	FTM_0979	-	trk system potassium uptake protein TrkA
786	 30.73	0	1063673..1065094	+	473	187931699	-	FTM_0980	-	amino acid antiporter
787	 32.88	0	1066056..1066274	-	72	187931700	infA	FTM_0982	-	translation initiation factor IF-1
788	 35.12	0	1066434..1067273	+	279	187931701	-	FTM_0983	-	hypothetical protein
789	 20.97	-2	1067270..1067536	+	88	187931702	-	FTM_0984	-	hypothetical protein
790	 35.66	0	1067617..1068993	+	458	187931703	ffh	FTM_0985	-	signal recognition particle GTPase
791	 33.78	0	1069025..1070137	+	370	187931704	aroG	FTM_0986	-	phospho-2-dehydro-3-deoxyheptonate aldolase
792	 33.97	0	1072848..1073636	+	262	187931705	xthA	FTM_0990	-	exodeoxyribonuclease III
793	 32.91	0	1073657..1074364	+	235	187931706	-	FTM_0991	-	short chain dehydrogenase
794	 30.16	0	1074367..1074870	+	167	187931707	-	FTM_0992	-	putative kinase
795	 27.50	-1	1074870..1075589	+	239	187931708	-	FTM_0993	-	hypothetical membrane protein
796	 36.12	0	1075627..1076988	+	453	187931709	gor	FTM_0994	-	glutathione reductase
797	 33.64	0	1076999..1077319	+	106	187931710	-	FTM_0995	-	hypothetical protein
798	 35.34	0	1077457..1078998	+	513	187931711	-	FTM_0996	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
799	 32.58	0	1078995..1080320	-	441	187931712	-	FTM_0997	-	ATP-dependent RNA helicase
800	 32.05	0	1080447..1081067	+	206	187931713	folE	FTM_0998	-	GTP cyclohydrolase I
801	 27.46	-1	1081914..1082339	+	141	187931714	-	FTM_1000	-	hypothetical protein
802	 28.99	-1	1082417..1083337	+	306	187931715	-	FTM_1001	-	carbon-nitrogen hydrolase family protein
803	 30.81	0	1085715..1086269	-	184	187932319	pabA	FTM_1004	-	para-aminobenzoate synthase component
804	 30.10	0	1086271..1088034	-	587	187931716	-	FTM_1005	-	para-aminobenzoate synthase component I
805	 28.88	-1	1088027..1089397	-	456	187931717	-	FTM_1006	-	AMP-binding enzyme
806	 27.97	-1	1089479..1089832	+	117	187931718	folB	FTM_1007	-	dihydroneopterin aldolase
807	 29.93	0	1089834..1091096	+	420	187931719	-	FTM_1008	-	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase/dihydropteroate synthase
808	 32.57	0	1091109..1092029	+	306	187931720	-	FTM_1009	-	lipase/esterase
809	 29.14	-1	1092045..1092545	+	166	187931721	-	FTM_1010	-	hypothetical protein
810	 25.90	-2	1093889..1094884	-	331	187931722	-	FTM_1012	-	hypothetical protein
811	 26.81	-1	1096816..1097520	-	234	187931723	-	FTM_1014	-	hypothetical protein
812	 36.34	+1	1097551..1097916	-	121	187931724	rplT	FTM_1015	-	50S ribosomal protein L20
813	 38.38	+1	1097952..1098149	-	65	187931725	rpmI	FTM_1016	-	50S ribosomal protein L35
814	 40.55	+2	1098192..1098704	-	170	187931726	infC	FTM_1017	-	translation initiation factor IF-3
815	 36.48	+1	1098735..1100639	-	634	187931727	thrS	FTM_1018	-	threonyl-tRNA synthetase
816	 25.93	-2	1102955..1103251	-	98	187931728	-	FTM_1020	-	hypothetical protein
817	 32.02	0	1103241..1103621	-	126	187931729	gcvH1	FTM_1021	-	glycine cleavage system H protein
818	 32.71	0	1103725..1104840	+	371	187931730	murG	FTM_1022	-	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
819	 36.58	+1	1104850..1105188	+	112	187931731	-	FTM_1023	-	hypothetical protein
820	 32.50	0	1105188..1105790	+	200	187931732	recR	FTM_1024	-	RecFOR complex, RecR component
821	 32.58	0	1105798..1107912	-	704	187931733	spoT	FTM_1025	-	GDP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
822	 32.76	0	1107981..1109192	-	403	187931734	-	FTM_1026	-	hypothetical protein
823	 32.04	0	1109194..1109658	-	154	187931735	capC	FTM_1027	-	capsule biosynthesis protein CapC
824	 34.48	0	1109683..1110900	-	405	187931736	capB	FTM_1028	-	capsule biosynthesis protein CapB
825	 34.95	0	1110976..1112211	-	411	187931737	-	FTM_1029	-	major facilitator superfamily
826	 36.34	+1	1112905..1113768	-	287	187931738	ans	FTM_1035	-	asparaginase
827	 37.73	+1	1113984..1114802	-	272	187931739	cphB	FTM_1036	-	cyanophycinase
828	 33.79	0	1115005..1116111	+	368	187931740	-	FTM_1037	-	ribokinase, pfkB family protein
829	 30.17	0	1116389..1117051	-	220	187931741	-	FTM_1038	-	haloacid dehalogenase-like hydrolase
830	 29.78	0	1117070..1118083	-	337	187931742	-	FTM_1039	-	glycosyl transferase group 1 family protein
831	 27.88	-1	1118086..1119093	-	335	187931743	-	FTM_1040	-	glycosyl transferase family 2 protein
832	 24.17	-2	1119110..1120069	-	319	187931744	-	FTM_1041	-	glycosyl transferase family 2 protein
833	 23.98	-2	1120078..1120761	-	227	187931745	-	FTM_1042	-	hypothetical protein
834	 24.29	-2	1120843..1121472	-	209	187931746	-	FTM_1043	-	methyltransferase domain family
835	 30.85	0	1121465..1122751	-	428	187931747	-	FTM_1044	-	hypothetical protein
836	 28.46	-1	1122765..1124447	-	560	187931748	-	FTM_1045	-	ATP-binding cassette (ABC) superfamily protein
837	 30.41	0	1124444..1125673	-	409	187931749	-	FTM_1046	-	glycosyl transferase group 1 family protein
838	 34.90	0	1125677..1126696	-	339	187931750	galE	FTM_1047	-	UDP-glucose 4-epimerase
839	 32.11	0	1126689..1128083	-	464	187931751	-	FTM_1048	-	sugar transferase involved in lipopolysaccharide synthesis
840	 37.07	+1	1128064..1128732	-	222	187931752	rpe	FTM_1049	-	D-ribulose-phosphate 3-epimerase
841	 34.26	0	1128869..1129840	+	323	187931753	kpsF	FTM_1050	-	phosphosugar isomerase
842	 26.32	-1	1130344..1131042	-	232	187931754	-	FTM_1052	-	hypothetical protein
843	 32.23	0	1131039..1131854	-	271	187931755	-	FTM_1053	-	hypothetical protein
844	 36.76	+1	1132193..1133155	-	320	187931756	-	FTM_1055	-	metallo-beta-lactamase superfamily protein
845	 37.04	+1	1133302..1134084	-	260	187931757	fabI	FTM_1056	-	enoyl-ACP reductase I
846	 36.55	+1	1134360..1135073	+	237	187931758	-	FTM_1057	-	hypothetical protein
847	 36.20	0	1138003..1139190	-	395	187931759	dnaJ	FTM_1060	-	chaperone protein DnaJ
848	 38.21	+1	1139216..1141144	-	642	187931760	dnaK	FTM_1061	-	chaperone, heat shock protein, HSP 70 family
849	 33.33	0	1141245..1141832	-	195	187931761	grpE	FTM_1062	-	chaperone GrpE (heat shock protein). Hsp70/Hsc70 protein regulator activity
850	 32.22	0	1141921..1143087	+	388	187931762	mltA	FTM_1063	-	membrane-bound lytic murein transglycosylase A
851	 30.13	0	1143080..1144264	+	394	187931763	hemG	FTM_1064	-	protoporphyrinogen oxidase
852	 36.13	0	1144403..1144831	+	142	187931764	rplM	FTM_1065	-	50S ribosomal protein L13
853	 38.46	+1	1144847..1145236	+	129	187931765	rpsI	FTM_1066	-	30S ribosomal protein S9
854	 29.77	0	1145296..1145913	+	205	187931766	mglA	FTM_1067	-	macrophage growth locus, subunit A
855	 32.35	0	1145915..1146322	+	135	187931767	mglB	FTM_1068	-	macrophage growth locus, subunit B
856	 29.14	-1	1146350..1147588	-	412	187931768	-	FTM_1069	-	sodium-solute symporter family protein
857	 31.56	0	1147581..1148144	-	187	187931769	rnhB	FTM_1070	-	ribonuclease HII
858	 35.08	0	1148146..1148889	-	247	187931770	-	FTM_1071	-	rRNA methylase, SpoU family
859	 27.85	-1	1148882..1149337	-	151	187931771	ptsN	FTM_1072	-	PEP-dependent sugar phosphotransferase system
860	 32.32	0	1149374..1149670	-	98	187931772	-	FTM_1073	-	sigma54 modulation protein
32.84	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.