IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
702	 27.21	-1	961036..961590	+	184	187931615	-	FTM_0880	-	fatty acid hydroxylase
703	 31.06	0	961665..963818	+	717	187931616	-	FTM_0881	-	hypothetical protein
704	 33.33	0	963920..964318	+	132	187931617	-	FTM_0882	-	hypothetical membrane protein
705	 32.06	0	964323..965264	+	313	187931618	fmt	FTM_0883	-	methionyl-tRNA formyltransferase
706	 32.00	0	965268..966242	+	324	187931619	gshB	FTM_0884	-	glutathione synthase
707	 35.19	0	966232..967527	+	431	187931620	hemL	FTM_0885	-	glutamate-1-semialdehyde-2,1-aminomutase
708	 30.16	0	967548..969215	-	555	187931621	-	FTM_0886	-	glycosyl hydrolase family 3
709	 33.87	0	971461..972387	-	308	187931622	hemF	FTM_0889	-	coproporphyrinogen III oxidase, aerobic
710	 36.01	0	973066..973401	+	111	187931623	rpsF	FTM_0891	-	30S ribosomal protein S6
711	 34.70	0	973417..973635	+	72	187931624	rpsR	FTM_0892	-	30S ribosomal protein S18
712	 38.16	+1	973654..974109	+	151	187931625	rplI	FTM_0893	-	50S ribosomal protein L9
713	 35.26	0	974199..975596	+	465	187931626	dnaB	FTM_0894	-	replicative DNA helicase
714	 34.68	0	975627..976739	+	370	187931627	-	FTM_0895	-	radical SAM enzyme domain, Cfr family
715	 32.01	0	976729..977634	+	301	187931628	pilF	FTM_0896	-	Type IV pili, pilus assembly protein
716	 35.17	0	977627..978442	+	271	187931629	rsuA	FTM_0897	-	16S rRNA pseudouridine synthase
717	 23.00	-2	978442..978867	+	141	187931630	-	FTM_0898	-	hypothetical protein
718	 26.76	-1	978845..979285	+	146	187931631	rimI	FTM_0899	-	ribosomal-protein-alanine acetyltransferase
719	 40.61	+2	981726..981890	+	54	187931632	-	FTM_0900	-	hypothetical protein
720	 24.52	-2	986432..987055	+	207	187931633	-	FTM_0904	-	hypothetical membrane protein
721	 30.32	0	987136..987567	+	143	187931634	-	FTM_0905	-	hypothetical protein
722	 32.21	0	987657..988634	+	325	187931635	ispB	FTM_0906	-	octaprenyl-diphosphate synthase
723	 34.32	0	988652..989464	-	270	187931636	-	FTM_0907	-	fkbp-type peptidyl-prolyl cis-trans isomerase family protein
724	 31.59	0	989478..990281	-	267	187931637	-	FTM_0908	-	predicted ATPase of the PP-loop superfamily
725	 29.02	-1	990274..990690	-	138	187931638	-	FTM_0909	-	thioesterase
726	 34.64	0	990706..991317	-	203	187931639	-	FTM_0910	-	hypothetical protein
727	 32.26	0	991318..992721	-	467	187931640	-	FTM_0911	-	serine-type D-Ala-D-Ala carboxypeptidase
728	 35.98	0	992977..993165	+	62	187931641	rpsU3	FTM_0912	-	30S ribosomal protein S21
729	 33.78	0	993240..993686	+	148	187931642	-	FTM_0913	-	GatB/YqeY domain protein
730	 31.08	0	993707..995524	+	605	187931643	dnaG	FTM_0914	-	DNA primase
731	 32.24	0	995549..997282	+	577	187931644	rpoD	FTM_0915	-	RNA polymerase sigma 70 factor RpoD
732	 33.01	0	1002746..1003366	-	206	187931645	lipB	FTM_0919	-	lipoate-protein ligase B
733	 28.42	-1	1003376..1003660	-	94	187931646	-	FTM_0920	-	hypothetical protein
734	 36.03	0	1003693..1005027	-	444	187931647	-	FTM_0921	-	D-alanyl-D-alanine carboxypeptidase
735	 32.18	0	1005184..1005705	+	173	187931648	ppa	FTM_0922	-	inorganic pyrophosphatase
736	 31.88	0	1005796..1006344	+	182	187931649	yrbI	FTM_0923	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
737	 29.82	0	1006352..1006978	+	208	187931650	-	FTM_0924	-	hypothetical protein
738	 30.20	0	1006965..1007795	+	276	187931651	-	FTM_0925	-	hypothetical protein
739	 37.98	+1	1007869..1008600	+	243	187931652	-	FTM_0926	-	ABC transporter, ATP-binding protein
740	 28.45	-1	1008649..1009242	+	197	187931653	-	FTM_0927	-	isomerase
741	 33.22	0	1009255..1011087	+	610	187931654	-	FTM_0928	-	protein of unknown function with predicted hydrolase and phosphorylase activity
742	 33.46	0	1011090..1011866	+	258	187931655	truA	FTM_0929	-	tRNA pseudouridine synthase A
743	 32.10	0	1011922..1013466	+	514	187931656	-	FTM_0930	-	amino acid permease
744	 34.49	0	1013554..1015104	+	516	187931657	guaA	FTM_0931	-	GMP synthase (glutamine-hydrolyzing)
745	 35.06	0	1015186..1017033	+	615	187931658	dxs	FTM_0932	-	1-deoxyxylulose-5-phosphate synthase
746	 31.25	0	1017049..1017384	+	111	187931659	-	FTM_0933	-	hypothetical protein
747	 30.09	0	1017603..1018034	+	143	187931660	-	FTM_0934	-	lipolytic enzyme, GDSL family
748	 30.12	0	1018044..1018634	-	196	187931661	-	FTM_0935	-	CBS domain pair protein
749	 29.89	0	1018752..1019477	+	241	187931662	-	FTM_0936	-	short chain dehydrogenase family protein
750	 37.25	+1	1019541..1020587	+	348	187931663	ruvB	FTM_0937	-	holliday junction DNA helicase RuvB
751	 28.57	-1	1020629..1021216	-	195	187931664	-	FTM_0938	-	peptidoglycan hydrolase
752	 25.93	-2	1021562..1021750	-	62	187931665	-	FTM_0939	-	hypothetical protein
753	 25.49	-2	1021862..1022065	-	67	187931666	-	FTM_0940	-	hypothetical protein
754	 27.93	-1	1022080..1022616	-	178	187931667	-	FTM_0941	-	hypothetical membrane protein
755	 26.91	-1	1022776..1023693	+	305	187931668	-	FTM_0942	-	hypothetical protein
756	 30.08	0	1025130..1026605	+	491	187931669	-	FTM_0944	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
757	 29.75	0	1026630..1027523	+	297	187931670	-	FTM_0945	-	drug/metabolite transporter superfamily protein
758	 33.63	0	1027609..1028622	+	337	187931671	pheS	FTM_0946	-	phenylalanyl-tRNA synthetase, alpha subunit
759	 31.48	0	1028643..1031015	+	790	187931672	pheT	FTM_0947	-	phenylalanyl-tRNA synthetase, beta subunit
760	 29.40	-1	1031058..1031489	-	143	187931673	-	FTM_0948	-	Fe2+/Zn2+ uptake regulator protein
761	 32.68	0	1031631..1032848	+	405	187931674	-	FTM_0949	-	hypothetical protein
762	 31.86	0	1032851..1033597	+	248	187931675	-	FTM_0950	-	zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein
763	 29.80	0	1033619..1034608	-	329	187931676	-	FTM_0951	-	lipoprotein, putative
764	 29.21	-1	1034777..1036207	-	476	187931677	cls	FTM_0952	-	cardiolipin synthetase
765	 32.40	0	1039091..1039951	+	286	187931678	-	FTM_0955	-	Mrp-like protein
766	 31.92	0	1039963..1040529	+	188	187931679	dcd	FTM_0956	-	deoxycytidine triphosphate deaminase
767	 28.80	-1	1040536..1041726	-	396	187931680	-	FTM_0957	-	small conductance mechanosensitive ion channel (MscS) family protein
768	 31.08	0	1041786..1042361	-	191	187931681	-	FTM_0958	-	rare lipoprotein B family protein
769	 33.01	0	1042369..1044810	-	813	187931682	leuS	FTM_0959	-	leucyl-tRNA synthetase
770	 26.11	-1	1044918..1046813	-	631	187931683	-	FTM_0960	-	hypothetical protein
771	 34.79	0	1047602..1048012	-	136	187931684	-	FTM_0962	-	hypothetical protein
772	 30.77	0	1048014..1048598	-	194	187931685	-	FTM_0963	-	hypothetical protein
773	 23.66	-2	1049234..1049605	-	123	187931686	-	FTM_0965	-	hypothetical protein
774	 24.76	-2	1050622..1051788	-	388	187931687	-	FTM_0967	-	hypothetical protein
775	 29.67	0	1052133..1053362	-	409	187931688	-	FTM_0968	-	hypothetical protein
776	 30.14	0	1053584..1054963	+	459	187931689	-	FTM_0969	-	amino acid transporter (AAT) family protein
777	 24.09	-2	1055005..1055610	+	201	187931690	-	FTM_0970	-	hypothetical membrane protein
778	 28.57	-1	1055614..1055907	+	97	187931691	-	FTM_0971	-	transcriptional regulator, MarR family
779	 31.50	0	1056304..1056630	-	108	187931692	trxA2	FTM_0972	-	thioredoxin
780	 28.70	-1	1056634..1057323	-	229	187931693	-	FTM_0973	-	lipoprotein, putative
781	 29.06	-1	1058279..1059424	-	381	187931694	sufD	FTM_0975	-	SufS activator complex, sufD subunit
782	 33.07	0	1059437..1060186	-	249	187931695	sufC	FTM_0976	-	sufS activator complex, sufC subunit
783	 36.31	+1	1060229..1061671	-	480	187931696	sufB	FTM_0977	-	sufS activator complex, sufB subunit
784	 32.36	0	1061678..1062088	-	136	187931697	-	FTM_0978	-	FeS assembly SUF system regulator
785	 30.49	0	1062241..1063614	+	457	187931698	trkA	FTM_0979	-	trk system potassium uptake protein TrkA
786	 30.73	0	1063673..1065094	+	473	187931699	-	FTM_0980	-	amino acid antiporter
787	 32.88	0	1066056..1066274	-	72	187931700	infA	FTM_0982	-	translation initiation factor IF-1
788	 35.12	0	1066434..1067273	+	279	187931701	-	FTM_0983	-	hypothetical protein
789	 20.97	-2	1067270..1067536	+	88	187931702	-	FTM_0984	-	hypothetical protein
790	 35.66	0	1067617..1068993	+	458	187931703	ffh	FTM_0985	-	signal recognition particle GTPase
791	 33.78	0	1069025..1070137	+	370	187931704	aroG	FTM_0986	-	phospho-2-dehydro-3-deoxyheptonate aldolase
792	 33.97	0	1072848..1073636	+	262	187931705	xthA	FTM_0990	-	exodeoxyribonuclease III
793	 32.91	0	1073657..1074364	+	235	187931706	-	FTM_0991	-	short chain dehydrogenase
794	 30.16	0	1074367..1074870	+	167	187931707	-	FTM_0992	-	putative kinase
795	 27.50	-1	1074870..1075589	+	239	187931708	-	FTM_0993	-	hypothetical membrane protein
796	 36.12	0	1075627..1076988	+	453	187931709	gor	FTM_0994	-	glutathione reductase
797	 33.64	0	1076999..1077319	+	106	187931710	-	FTM_0995	-	hypothetical protein
798	 35.34	0	1077457..1078998	+	513	187931711	-	FTM_0996	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
799	 32.58	0	1078995..1080320	-	441	187931712	-	FTM_0997	-	ATP-dependent RNA helicase
800	 32.05	0	1080447..1081067	+	206	187931713	folE	FTM_0998	-	GTP cyclohydrolase I
801	 27.46	-1	1081914..1082339	+	141	187931714	-	FTM_1000	-	hypothetical protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.