IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
657	 35.05	0	893435..894073	+	212	187931570	-	FTM_0821	-	glycoprotease family protein
658	 34.20	0	894077..894883	+	268	187931571	-	FTM_0822	-	glutamine amidotransferase class-II family protein
659	 35.76	0	894893..896086	+	397	187931572	-	FTM_0823	-	aspartate aminotransferase
660	 32.77	0	896200..897093	+	297	187931573	era	FTM_0824	-	GTP-binding protein Era
661	 28.06	-1	897108..897524	+	138	187931574	-	FTM_0825	-	hypothetical membrane protein
662	 33.79	0	900861..901517	-	218	187931575	adk	FTM_0827	-	adenylate kinase
663	 30.55	0	901644..902648	+	334	187931576	pilM	FTM_0828	-	type IV pili, pilus assembly protein
664	 31.91	0	902650..903213	+	187	187931577	pilN	FTM_0829	-	type IV pili associated protein
665	 31.99	0	903207..903803	+	198	187931578	pilO	FTM_0830	-	type IV pili glycosylation protein
666	 30.29	0	903809..904399	+	196	187931579	pilP	FTM_0831	-	Type IV pili periplasmic component
667	 35.65	0	904412..906184	+	590	187931580	pilQ	FTM_0832	-	type IV pili secretin component
668	 34.27	0	906309..906839	+	176	187931581	aroK	FTM_0833	-	shikimate kinase
669	 32.59	0	906836..907915	+	359	187931582	aroB	FTM_0834	-	3-dehydroquinate synthase
670	 28.00	-1	907973..908197	+	74	187931583	-	FTM_0835	-	hypothetical protein
671	 31.51	0	908264..908647	-	127	187931584	-	FTM_0836	-	hypothetical protein
672	 28.12	-1	908860..909147	+	95	187931585	-	FTM_0837	-	hypothetical protein
673	 35.72	0	909164..913228	+	1354	187931586	putA	FTM_0838	-	bifunctional proline dehydrogenase, pyrroline-5-carboxylate dehydrogenase
674	 34.26	0	913388..914896	+	502	187931587	-	FTM_0839	-	amino acid-polyamine-organocation (APC) superfamily
675	 27.68	-1	914972..916156	+	394	187931588	-	FTM_0840	-	major facilitator superfamily (MFS) transport protein
676	 29.25	-1	916169..917344	+	391	187931589	dfp	FTM_0841	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate cysteine ligase
677	 30.59	0	918397..918651	-	84	187931590	-	FTM_0843	-	hypothetical protein
678	 35.37	0	919693..919938	-	81	187931591	-	FTM_0845	-	hypothetical protein
679	 32.96	0	923786..924592	+	268	187931592	-	FTM_0850	-	ROK family protein
680	 30.53	0	925598..926275	-	225	187931593	bioD	FTM_0852	-	dethiobiotin synthase
681	 25.07	-2	926279..927016	-	245	187931594	bioC	FTM_0853	-	biotin synthesis protein BioC
682	 29.96	0	926994..928121	-	375	187931595	bioF	FTM_0854	-	8-amino-7-oxononanoate synthase
683	 31.32	0	928115..929056	-	313	187931596	bioB	FTM_0855	-	biotin synthase
684	 31.01	0	929103..930434	+	443	187931597	bioA	FTM_0856	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
685	 36.76	+1	935361..936614	-	417	187931598	glyA	FTM_0860	-	serine hydroxymethyltransferase
686	 25.50	-2	936718..937266	+	182	187931599	-	FTM_0861	-	hypothetical protein
687	 25.31	-2	937281..938552	-	423	187931600	-	FTM_0862	-	hypothetical membrane protein
688	 25.08	-2	938760..940091	+	443	187931601	-	FTM_0863	-	hypothetical membrane protein
689	 28.84	-1	940117..941007	-	296	187931602	-	FTM_0864	-	glycosyl transferase family 8 protein
690	 27.82	-1	941015..942103	-	362	187931603	-	FTM_0865	-	hypothetical protein
691	 32.58	0	942273..943337	+	354	187931604	lpcC	FTM_0866	-	glycosyl transferase group 1 family protein
692	 31.79	0	943338..944435	-	365	187931605	-	FTM_0867	-	choloylglycine hydrolase family protein
693	 32.69	0	944682..946073	+	463	187931606	-	FTM_0868	-	proton-dependent oligopeptide transporter disrupted by IS element
694	 31.58	0	946895..947407	+	170	187931607	-	FTM_0869	-	hypothetical protein
695	 31.59	0	947565..948194	-	209	187931608	-	FTM_0870	-	hypothetical protein
696	 33.93	0	948838..949344	+	168	187931609	-	FTM_0871	-	hypothetical protein
697	 29.09	-1	952618..953418	+	266	187931610	-	FTM_0873	-	hypothetical protein
698	 31.34	0	954242..956899	+	885	187931611	-	FTM_0875	-	type III restriction system endonuclease
699	 32.96	0	956918..957448	+	176	187931612	-	FTM_0876	-	type III restriction enzyme, res subunit
700	 29.53	0	957547..957888	+	113	187931613	-	FTM_0877	-	hypothetical protein
701	 26.16	-1	959208..960071	+	287	187931614	-	FTM_0878	-	hypothetical protein
702	 27.21	-1	961036..961590	+	184	187931615	-	FTM_0880	-	fatty acid hydroxylase
703	 31.06	0	961665..963818	+	717	187931616	-	FTM_0881	-	hypothetical protein
704	 33.33	0	963920..964318	+	132	187931617	-	FTM_0882	-	hypothetical membrane protein
705	 32.06	0	964323..965264	+	313	187931618	fmt	FTM_0883	-	methionyl-tRNA formyltransferase
706	 32.00	0	965268..966242	+	324	187931619	gshB	FTM_0884	-	glutathione synthase
707	 35.19	0	966232..967527	+	431	187931620	hemL	FTM_0885	-	glutamate-1-semialdehyde-2,1-aminomutase
708	 30.16	0	967548..969215	-	555	187931621	-	FTM_0886	-	glycosyl hydrolase family 3
709	 33.87	0	971461..972387	-	308	187931622	hemF	FTM_0889	-	coproporphyrinogen III oxidase, aerobic
710	 36.01	0	973066..973401	+	111	187931623	rpsF	FTM_0891	-	30S ribosomal protein S6
711	 34.70	0	973417..973635	+	72	187931624	rpsR	FTM_0892	-	30S ribosomal protein S18
712	 38.16	+1	973654..974109	+	151	187931625	rplI	FTM_0893	-	50S ribosomal protein L9
713	 35.26	0	974199..975596	+	465	187931626	dnaB	FTM_0894	-	replicative DNA helicase
714	 34.68	0	975627..976739	+	370	187931627	-	FTM_0895	-	radical SAM enzyme domain, Cfr family
715	 32.01	0	976729..977634	+	301	187931628	pilF	FTM_0896	-	Type IV pili, pilus assembly protein
716	 35.17	0	977627..978442	+	271	187931629	rsuA	FTM_0897	-	16S rRNA pseudouridine synthase
717	 23.00	-2	978442..978867	+	141	187931630	-	FTM_0898	-	hypothetical protein
718	 26.76	-1	978845..979285	+	146	187931631	rimI	FTM_0899	-	ribosomal-protein-alanine acetyltransferase
719	 40.61	+2	981726..981890	+	54	187931632	-	FTM_0900	-	hypothetical protein
720	 24.52	-2	986432..987055	+	207	187931633	-	FTM_0904	-	hypothetical membrane protein
721	 30.32	0	987136..987567	+	143	187931634	-	FTM_0905	-	hypothetical protein
722	 32.21	0	987657..988634	+	325	187931635	ispB	FTM_0906	-	octaprenyl-diphosphate synthase
723	 34.32	0	988652..989464	-	270	187931636	-	FTM_0907	-	fkbp-type peptidyl-prolyl cis-trans isomerase family protein
724	 31.59	0	989478..990281	-	267	187931637	-	FTM_0908	-	predicted ATPase of the PP-loop superfamily
725	 29.02	-1	990274..990690	-	138	187931638	-	FTM_0909	-	thioesterase
726	 34.64	0	990706..991317	-	203	187931639	-	FTM_0910	-	hypothetical protein
727	 32.26	0	991318..992721	-	467	187931640	-	FTM_0911	-	serine-type D-Ala-D-Ala carboxypeptidase
728	 35.98	0	992977..993165	+	62	187931641	rpsU3	FTM_0912	-	30S ribosomal protein S21
729	 33.78	0	993240..993686	+	148	187931642	-	FTM_0913	-	GatB/YqeY domain protein
730	 31.08	0	993707..995524	+	605	187931643	dnaG	FTM_0914	-	DNA primase
731	 32.24	0	995549..997282	+	577	187931644	rpoD	FTM_0915	-	RNA polymerase sigma 70 factor RpoD
732	 33.01	0	1002746..1003366	-	206	187931645	lipB	FTM_0919	-	lipoate-protein ligase B
733	 28.42	-1	1003376..1003660	-	94	187931646	-	FTM_0920	-	hypothetical protein
734	 36.03	0	1003693..1005027	-	444	187931647	-	FTM_0921	-	D-alanyl-D-alanine carboxypeptidase
735	 32.18	0	1005184..1005705	+	173	187931648	ppa	FTM_0922	-	inorganic pyrophosphatase
736	 31.88	0	1005796..1006344	+	182	187931649	yrbI	FTM_0923	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
737	 29.82	0	1006352..1006978	+	208	187931650	-	FTM_0924	-	hypothetical protein
738	 30.20	0	1006965..1007795	+	276	187931651	-	FTM_0925	-	hypothetical protein
739	 37.98	+1	1007869..1008600	+	243	187931652	-	FTM_0926	-	ABC transporter, ATP-binding protein
740	 28.45	-1	1008649..1009242	+	197	187931653	-	FTM_0927	-	isomerase
741	 33.22	0	1009255..1011087	+	610	187931654	-	FTM_0928	-	protein of unknown function with predicted hydrolase and phosphorylase activity
742	 33.46	0	1011090..1011866	+	258	187931655	truA	FTM_0929	-	tRNA pseudouridine synthase A
743	 32.10	0	1011922..1013466	+	514	187931656	-	FTM_0930	-	amino acid permease
744	 34.49	0	1013554..1015104	+	516	187931657	guaA	FTM_0931	-	GMP synthase (glutamine-hydrolyzing)
745	 35.06	0	1015186..1017033	+	615	187931658	dxs	FTM_0932	-	1-deoxyxylulose-5-phosphate synthase
746	 31.25	0	1017049..1017384	+	111	187931659	-	FTM_0933	-	hypothetical protein
747	 30.09	0	1017603..1018034	+	143	187931660	-	FTM_0934	-	lipolytic enzyme, GDSL family
748	 30.12	0	1018044..1018634	-	196	187931661	-	FTM_0935	-	CBS domain pair protein
749	 29.89	0	1018752..1019477	+	241	187931662	-	FTM_0936	-	short chain dehydrogenase family protein
750	 37.25	+1	1019541..1020587	+	348	187931663	ruvB	FTM_0937	-	holliday junction DNA helicase RuvB
751	 28.57	-1	1020629..1021216	-	195	187931664	-	FTM_0938	-	peptidoglycan hydrolase
752	 25.93	-2	1021562..1021750	-	62	187931665	-	FTM_0939	-	hypothetical protein
753	 25.49	-2	1021862..1022065	-	67	187931666	-	FTM_0940	-	hypothetical protein
754	 27.93	-1	1022080..1022616	-	178	187931667	-	FTM_0941	-	hypothetical membrane protein
755	 26.91	-1	1022776..1023693	+	305	187931668	-	FTM_0942	-	hypothetical protein
756	 30.08	0	1025130..1026605	+	491	187931669	-	FTM_0944	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.