IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.84   STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
15	 31.72	0	20215..21267	-	350	187930928	-	FTM_0017	-	hypothetical membrane protein
16	 28.36	-1	21254..22219	-	321	187930929	-	FTM_0018	-	HlyD family secretion protein
17	 29.41	-1	22308..22715	-	135	187930930	-	FTM_0019	-	hypothetical membrane protein
18	 31.61	0	22841..23710	+	289	187930931	-	FTM_0020	-	transcriptional regulator, LysR family
19	 33.97	0	23711..24337	-	208	187930932	-	FTM_0021	-	soul domain protein
20	 32.06	0	24480..25028	+	182	187930933	-	FTM_0022	-	chorismate mutase
21	 35.04	0	28727..29371	+	214	187930934	pyrF	FTM_0024	-	orotidine-5'-phosphate decarboxylase
22	 33.60	0	29373..30119	+	248	187930935	pyrD	FTM_0025	-	diyroorotate dehydrogenase
23	 29.38	-1	30381..30860	-	159	187930936	dtd	FTM_0026	-	D-tyrosyl-tRNA(Tyr) deacylase
24	 31.78	0	32312..33790	-	492	187930937	-	FTM_0028	-	beta-fructofuranosidase
25	 34.68	0	35592..36257	-	221	187930938	-	FTM_0030	-	nitroreductase
26	 33.48	0	36660..37352	+	230	187930939	-	FTM_0031	-	hypothetical protein
27	 33.17	0	37349..38554	-	401	187930940	-	FTM_0032	-	hydroxy/aromatic amino acid permease
28	 31.53	0	38663..39271	+	202	187930941	gidB	FTM_0033	-	methyltransferase GidB
29	 33.78	0	39268..39936	+	222	187930942	-	FTM_0034	-	hypothetical protein
30	 31.98	0	39929..40813	-	294	187930943	-	FTM_0035	-	hypothetical membrane protein
31	 30.88	0	41015..41911	-	298	187930944	-	FTM_0036	-	transcription regulator, LysR family
32	 30.26	0	42014..43150	+	378	187930945	-	FTM_0037	-	drug:H+ antiporter-1 (DHA1) family protein
33	 35.18	0	45699..46295	+	198	187930946	-	FTM_0039	-	phosphoheptose isomerase
34	 30.25	0	46303..46659	+	118	187930947	-	FTM_0040	-	outer membrane lipoprotein
35	 34.07	0	46733..47005	-	90	187930948	rpsT	FTM_0041	-	ribosomal protein S20
36	 37.57	+1	47275..49068	+	597	187930949	lepA	FTM_0042	-	GTP-binding protein LepA
37	 36.67	+1	49074..50153	+	359	187930950	trmU	FTM_0043	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
38	 34.15	0	50173..51150	-	325	187930951	-	FTM_0044	-	lipoprotein, putative
39	 33.33	0	51244..51762	-	172	187930952	-	FTM_0045	-	peptide deformylase
40	 35.81	0	51765..52208	-	147	187930953	ribH	FTM_0046	-	6,7-dimethyl-8-ribityllumazine synthase
41	 35.73	0	52218..53429	-	403	187930954	-	FTM_0047	-	riboflavin biosynthesis protein ribAB
42	 31.35	0	53422..54027	-	201	187930955	ribC	FTM_0048	-	riboflavin synthase, alpha subunit
43	 34.08	0	54020..55087	-	355	187930956	ribD	FTM_0049	-	riboflavin biosynthesis protein RibD
44	 32.06	0	57620..58012	+	130	187930957	-	FTM_0052	-	hypothetical membrane protein
45	 33.09	0	58033..58443	+	136	187930958	-	FTM_0053	-	hypothetical membrane protein
46	 36.09	0	58937..60349	+	470	187930959	eriC	FTM_0055	-	H(+)/Cl(-) exchange transporter ClcA
47	 39.55	+1	61853..63043	+	396	187930960	trpB	FTM_0057	-	tryptophan synthase, beta subunit
48	 35.80	0	63043..63852	+	269	187930961	trpA	FTM_0058	-	tryptophan synthase, alpha subunit
49	 35.89	0	65278..67857	+	859	187930962	clpB	FTM_0061	-	chaperone ClpB
50	 36.43	+1	68108..70300	+	730	187930963	chiB	FTM_0062	-	chitinase
51	 35.49	0	70354..71514	+	386	187930964	purT	FTM_0063	-	phosphoribosylglycinamide formyltransferase 2
52	 31.00	0	72203..72844	-	213	187930965	-	FTM_0065	-	hypothetical membrane protein
53	 37.04	+1	73081..73404	+	107	187930966	-	FTM_0066	-	ferredoxin-1
54	 33.73	0	73567..74319	+	250	187930967	-	FTM_0067	-	acyltransferase
55	 34.68	0	74333..75073	+	246	187930968	-	FTM_0068	-	acyltransferase
56	 29.58	0	75079..75798	-	239	187930969	-	FTM_0069	-	endonuclease/exonuclease/phosphatase family
57	 32.73	0	75863..77014	-	383	187930970	nhaA	FTM_0070	-	Na+/H+ antiporter NhaA
58	 33.00	0	77108..78004	+	298	187930971	-	FTM_0071	-	rieske protein
59	 32.75	0	78070..78579	+	169	187930972	-	FTM_0072	-	B-type cytochrome
60	 34.15	0	82386..83246	+	286	187930973	-	FTM_0076	-	galactose mutarotase
61	 35.57	0	85014..86312	+	432	187930974	purB	FTM_0079	-	adenylosuccinate lyase
62	 29.91	0	86284..86925	+	213	187930975	-	FTM_0080	-	hypothetical protein
63	 29.18	-1	87012..88553	+	513	187930976	-	FTM_0081	-	ATP-binding cassette
64	 36.97	+1	88564..89634	+	356	187930977	-	FTM_0082	-	membrane-fusion protein
65	 31.91	0	89717..89998	+	93	187930978	gatC	FTM_0083	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
66	 37.69	+1	90007..91452	+	481	187930979	gatA	FTM_0084	-	glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit
67	 36.85	+1	91455..92876	+	473	187930980	gatB	FTM_0085	-	glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit
68	 30.64	0	92891..93298	+	135	187930981	-	FTM_0086	-	hypothetical protein
69	 34.12	0	94855..96384	-	509	187930982	-	FTM_0088	-	hypothetical membrane protein
70	 33.92	0	96470..97660	-	396	187930983	-	FTM_0089	-	drug:H+ antiporter-1
71	 32.70	0	97676..98929	-	417	187930984	-	FTM_0090	-	diaminopimelate decarboxylase
72	 31.04	0	98922..100184	-	420	187930985	-	FTM_0091	-	drug:H+ antiporter-1
73	 32.55	0	100191..102110	-	639	187930986	frgA	FTM_0092	-	siderophore biosynthesis protein
74	 32.86	0	102363..102785	-	140	187930987	fur	FTM_0093	-	ferric uptake regulation protein
75	 36.34	+1	102993..103391	+	132	187930988	nuoA	FTM_0094	-	NADH dehydrogenase I, A subunit
76	 43.61	+2	103382..103858	+	158	187930989	nuoB	FTM_0095	-	NADH dehydrogenase I, B subunit
77	 36.28	+1	103861..104505	+	214	187930990	nuoC	FTM_0096	-	NADH dehydrogenase I, C subunit
78	 38.92	+1	104527..105780	+	417	187930991	nuoD	FTM_0097	-	NADH dehydrogenase I, D subunit
79	 35.99	0	105790..106278	+	162	187930992	nuoE	FTM_0098	-	NADH dehydrogenase I, E subunit
80	 40.39	+2	106285..107559	+	424	187930993	nuoF	FTM_0099	-	NADH dehydrogenase I, F subunit
81	 36.46	+1	107577..109943	+	788	187930994	nuoG	FTM_0100	-	NADH dehydrogenase I, G subunit
82	 36.50	+1	109945..110955	+	336	187930995	nuoH	FTM_0101	-	NADH dehydrogenase I, H subunit
83	 35.17	0	110969..111457	+	162	187930996	nuoI	FTM_0102	-	NADH dehydrogenase I, I subunit
84	 34.98	0	111462..112067	+	201	187930997	nuoJ	FTM_0103	-	NADH dehydrogenase I, J subunit
85	 32.08	0	112060..112377	+	105	187930998	nuoK	FTM_0104	-	NADH dehydrogenase I, K subunit
86	 35.02	0	112387..114396	+	669	187930999	nuoL	FTM_0105	-	NADH dehydrogenase I, L subunit
87	 36.29	+1	114422..116011	+	529	187931000	nuoM	FTM_0106	-	NADH dehydrogenase I, M subunit
88	 35.40	0	116027..117478	+	483	187931001	nuoN	FTM_0107	-	NADH dehydrogenase I, N subunit
89	 30.77	0	117554..117748	+	64	187931002	-	FTM_0108	-	hypothetical protein
90	 35.75	0	119311..120345	+	344	187931003	hemE	FTM_0110	-	uroporphyrinogen decarboxylase
91	 35.32	0	120571..121023	+	150	187931004	-	FTM_0112	-	protein Lpl2691
92	 34.49	0	121041..122510	+	489	187931005	nusA	FTM_0113	-	transcription termination factor NusA
93	 38.13	+1	122549..125089	+	846	187931006	infB	FTM_0114	-	translation initiation factor IF-2
94	 32.41	0	125092..125523	+	143	187931007	rbfA	FTM_0115	-	ribosome-binding factor A
95	 34.76	0	125531..126796	+	421	187931008	hisS	FTM_0116	-	histidyl-tRNA synthetase
96	 33.95	0	126803..128101	+	432	187931009	-	FTM_0117	-	major facilitator superfamily
97	 29.59	0	128104..129171	+	355	187931010	-	FTM_0118	-	ATPase
98	 33.98	0	129164..130093	+	309	187931011	rluC	FTM_0119	-	ribosomal large subunit pseudouridine synthase C
99	 35.25	0	130095..131399	-	434	187931012	-	FTM_0120	-	major facilitator superfamily
100	 27.08	-1	131476..131907	+	143	187931013	-	FTM_0121	-	hypothetical membrane protein
101	 36.99	+1	131960..132751	+	263	187931014	atpB	FTM_0122	-	ATP synthase, F0 sector, subunit a
102	 41.18	+2	132802..133107	+	101	187931015	atpE	FTM_0123	-	ATP synthase, F0 sector, subunit c
103	 37.79	+1	133153..133623	+	156	187931016	atpF	FTM_0124	-	ATP synthase, F0 sector, subunit b
104	 32.57	0	133643..134167	+	174	187931017	atpH	FTM_0125	-	ATP synthase, F1 sector, subunit delta
105	 38.46	+1	134186..135727	+	513	187931018	atpA	FTM_0126	-	ATP synthase, F1 sector, subunit alpha
106	 35.12	0	135742..136638	+	298	187931019	atpG	FTM_0127	-	ATP synthase, F1 sector, subunit gamma
107	 38.71	+1	136648..138024	+	458	187931020	atpD	FTM_0128	-	ATP synthase, F1 sector, subunit beta
108	 37.90	+1	138037..138474	+	145	187931021	atpC	FTM_0129	-	ATP synthase, F1 sector, subunit epsilon
109	 32.10	0	138685..141528	+	947	187931022	-	FTM_0130	-	hypothetical protein
110	 35.15	0	141545..141874	-	109	187931023	-	FTM_0131	-	glutaredoxin-related protein
111	 33.85	0	142010..142588	+	192	187931024	sodB	FTM_0132	-	iron/manganese superoxide dismutase family protein
112	 28.57	-1	142600..142788	+	62	187931025	-	FTM_0133	-	hypothetical protein
113	 32.94	0	142793..144058	-	421	187931026	ampG	FTM_0134	-	peptide-acetyl-coenzyme A transporter (PAT) family protein
114	 36.35	+1	144148..145407	-	419	187931027	gltA	FTM_0135	-	citrate synthase I
32.84	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.