IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
555	 34.01	0	760619..761212	+	197	187931468	tdk	FTM_0696	-	thymidine kinase
556	 28.60	-1	761255..761719	-	154	187931469	-	FTM_0697	-	hypothetical membrane protein
557	 34.24	0	761874..763190	+	438	187931470	tig	FTM_0698	-	trigger factor (TF) protein (peptidyl-prolyl cis/trans isomerase)
558	 34.32	0	763216..763821	+	201	187931471	clpP	FTM_0699	-	ATP-dependent Clp protease, proteolytic subunit ClpP
559	 32.38	0	763845..765098	+	417	187931472	clpX	FTM_0700	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
560	 34.71	0	765123..767447	+	774	187931473	lon	FTM_0701	-	ATP-dependent protease La
561	 36.63	+1	767534..767806	+	90	187931474	hupB	FTM_0702	-	DNA-binding protein HU-beta
562	 28.24	-1	767920..769353	+	477	187931475	-	FTM_0703	-	hypothetical protein
563	 33.12	0	769354..770280	+	308	187931476	miaA	FTM_0704	-	tRNA delta(2)-isopentenylpyrophosphate transferase
564	 30.61	0	770391..770720	+	109	187931477	hfq	FTM_0705	-	host factor I for bacteriophage Q beta replication
565	 33.56	0	770769..772079	+	436	187931478	hflX	FTM_0706	-	protease, GTP-binding subunit
566	 32.15	0	772090..773268	-	392	187931479	-	FTM_0707	-	oxidoreductase
567	 33.90	0	773453..774520	+	355	187931480	hflK	FTM_0708	-	HflK-HflC membrane protein complex, HflK
568	 33.44	0	774522..775448	+	308	187931481	hflC	FTM_0709	-	HflK-HflC membrane protein complex, HflC
569	 35.19	0	775449..775934	+	161	187931482	wzb	FTM_0710	-	low molecular weight (LMW) phosphotyrosine protein phosphatase
570	 32.49	0	775931..776524	+	197	187931483	engB	FTM_0711	-	ATP/GTP-binding protein
571	 30.24	0	777577..778773	-	398	187931484	-	FTM_0712	-	predicted ATPase of the PP-loop superfamily
572	 34.06	0	778774..780009	-	411	187931485	serA	FTM_0713	-	D-3-phosphoglycerate dehydrogenase
573	 34.91	0	780021..780845	-	274	187931486	thyA	FTM_0714	-	thymidylate synthase
574	 36.93	+1	780830..781636	-	268	187931487	lgt	FTM_0715	-	prolipoprotein diacylglyceryl transferase
575	 32.99	0	781651..784308	-	885	187931488	rne	FTM_0716	-	ribonuclease E
576	 35.03	0	784558..785733	+	391	187931489	iscS	FTM_0717	-	cysteine desulfurase
577	 31.52	0	785726..786055	+	109	187931490	-	FTM_0718	-	hypothetical protein
578	 28.47	-1	786039..786737	+	232	187931491	recO	FTM_0719	-	RecFOR complex, RecO component
579	 32.25	0	786813..787460	-	215	187931492	-	FTM_0720	-	DedA family protein
580	 28.07	-1	787516..788142	-	208	187931493	-	FTM_0721	-	DedA family protein
581	 30.34	0	788149..788415	-	88	187931494	-	FTM_0722	-	BolA family protein
582	 28.78	-1	788418..788966	-	182	187931495	-	FTM_0723	-	5-formyltetrahydrofolate cycloligase
583	 31.80	0	789292..789942	+	216	187931496	-	FTM_0724	-	hypothetical protein
584	 34.74	0	789951..791162	+	403	187931497	ubiH	FTM_0725	-	2-octaprenyl-6-methoxyphenyl hydroxylase
585	 33.41	0	791152..792387	+	411	187931498	-	FTM_0726	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
586	 25.54	-2	792409..792870	+	153	187931499	-	FTM_0727	-	hypothetical protein
587	 34.81	0	792896..793912	+	338	187931500	queA	FTM_0728	-	S-adenosylmethionine:tRNA ribosyltransferase- isomerase
588	 33.33	0	794548..795339	+	263	187931501	-	FTM_0729	-	haloacid dehalogenase-like hydrolase
589	 28.88	-1	795593..796378	-	261	187931502	-	FTM_0730	-	hypothetical protein
590	 30.16	0	798640..798828	+	62	187931503	-	FTM_0733	-	hypothetical protein
591	 32.93	0	798821..799573	+	250	187931504	kdsB	FTM_0734	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
592	 31.82	0	799566..799961	+	131	187931505	-	FTM_0735	-	HIT family protein
593	 32.72	0	799958..801106	-	382	187931506	galK	FTM_0736	-	galactokinase
594	 33.24	0	801109..802134	-	341	187931507	galT	FTM_0737	-	galactose-1-phosphate uridylyltransferase
595	 33.91	0	802225..803607	+	460	187931508	galP1	FTM_0738	-	galactose-proton symporter, major facilitator superfamily
596	 33.41	0	803639..805033	+	464	187931509	galP2	FTM_0739	-	galactose-proton symporter, major facilitator superfamily
597	 36.92	+1	805128..805406	+	92	187931510	ppiC	FTM_0740	-	parvulin-like peptidyl-prolyl isomerase domain
598	 34.62	0	805471..807180	+	569	187931511	deaD	FTM_0741	-	DEAD-box subfamily ATP-dependent helicase
599	 34.55	0	807297..807869	+	190	187931512	gmk	FTM_0742	-	guanylate kinase
600	 35.77	0	807890..808915	+	341	187931513	nadA	FTM_0743	-	quinolinate synthetase complex, A subunit
601	 34.03	0	808924..809784	+	286	187931514	nadC	FTM_0744	-	nicotinate-nucleotide pyrophosphorylase
602	 33.94	0	809787..811274	+	495	187931515	nadB	FTM_0745	-	L-aspartate oxidase
603	 30.93	0	813968..814258	+	96	187931516	-	FTM_0748	-	hypothetical protein
604	 32.70	0	814287..814757	+	156	187931517	-	FTM_0749	-	glutathione peroxidase
605	 30.09	0	817045..817692	+	215	187931518	-	FTM_0752	-	hypothetical protein
606	 29.46	0	817703..817831	-	42	187931519	-	FTM_0753	-	hypothetical membrane protein
607	 33.07	0	817999..819492	+	497	187931520	-	FTM_0754	-	carbohydrate kinase family protein
608	 31.44	0	819527..819895	-	122	187931521	-	FTM_0755	-	heat shock protein 15
609	 33.33	0	825643..826458	+	271	187931522	-	FTM_0758	-	hypothetical protein
610	 33.81	0	828252..829097	-	281	187931523	-	FTM_0760	-	auxiliary transport protein, membrane fusion protein (MFP) family, putative
611	 31.86	0	829099..829302	-	67	187931524	-	FTM_0761	-	hypothetical protein
612	 32.64	0	829499..830218	+	239	187931525	-	FTM_0762	-	transcriptional regulator, IclR family
613	 24.79	-2	831312..831428	-	38	187931526	-	FTM_0764	-	hypothetical protein
614	 32.12	0	831467..832453	+	328	187931527	-	FTM_0765	-	aminomutase
615	 34.80	0	832524..832727	-	67	187931528	cspA	FTM_0766	-	cold shock protein, DNA-binding
616	 22.11	-2	832926..833210	-	94	187931529	-	FTM_0767	-	hypothetical protein
617	 31.84	0	833500..833700	+	66	187931530	rpsU2	FTM_0768	-	30S ribosomal protein S21
618	 32.37	0	835219..836358	+	379	187931531	-	FTM_0771	-	predicted Co/Zn/Cd cation transporter
619	 33.10	0	836375..837238	+	287	187931532	galU	FTM_0772	-	UTP-glucose-1-phosphate uridylyltransferase
620	 33.22	0	838711..839628	+	305	187931533	-	FTM_0774	-	integral membrane protein DUF6
621	 30.43	0	839631..839837	-	68	187931534	-	FTM_0775	-	lipoprotein, putative
622	 26.87	-1	839922..840215	-	97	187931535	-	FTM_0776	-	hypothetical protein
623	 26.29	-1	840237..841286	-	349	187931536	recF	FTM_0777	-	RecFOR complex, RecF component
624	 26.91	-1	841290..842036	-	248	187931537	-	FTM_0778	-	Mg-dependent DNase
625	 33.05	0	842229..844313	+	694	187931538	glyS	FTM_0779	-	glycyl-tRNA synthetase, beta subunit
626	 34.52	0	847186..847860	-	224	187931539	rpiA	FTM_0781	-	ribose 5-phosphate isomerase A
627	 27.13	-1	847862..849232	-	456	187931540	-	FTM_0782	-	hypothetical membrane protein
628	 31.55	0	849246..849638	-	130	187931541	-	FTM_0783	-	lipoprotein, putative
629	 35.77	0	849650..851533	-	627	187931542	gidA	FTM_0784	-	glucose inhibited division protein
630	 28.07	-1	851676..852758	+	360	187931543	-	FTM_0785	-	hypothetical membrane protein
631	 28.81	-1	852745..853650	+	301	187931544	-	FTM_0786	-	hypothetical membrane protein
632	 32.78	0	853661..854560	-	299	187931545	-	FTM_0787	-	transcriptional regulator, LysR family
633	 36.51	+1	854676..855398	+	240	187931546	-	FTM_0788	-	oxidoreductase, short-chain dehydrogenase family protein
634	 32.78	0	855532..856980	+	482	187931547	sbcB	FTM_0789	-	exodeoxyribonuclease I
635	 35.82	0	856982..858988	+	668	187931548	uvrB	FTM_0790	-	excinuclease ABC, B subunit
636	 30.45	0	859025..859822	+	265	187931549	-	FTM_0791	-	hypothetical membrane protein
637	 32.08	0	859822..860619	+	265	187931550	murI	FTM_0792	-	glutamate racemase
638	 33.41	0	860710..861987	+	425	187931551	-	FTM_0793	-	metabolite:H+ symporter (MHS) family protein
639	 30.20	0	863660..864586	+	308	187931552	-	FTM_0795	-	conserved
640	 30.74	0	867716..869101	+	461	187931553	xseA	FTM_0798	-	exodeoxyribonuclease VII large subunit
641	 33.83	0	869085..869285	+	66	187931554	-	FTM_0799	-	hypothetical protein
642	 28.46	-1	870894..871529	-	211	187931555	-	FTM_0801	-	hypothetical membrane protein
643	 36.08	0	872546..873019	-	157	187931556	smpB	FTM_0803	-	SsrA (tmRNA)-binding protein
644	 34.49	0	873094..873525	+	143	187931557	-	FTM_0804	-	oligoketide cyclase/lipid transport protein
645	 31.37	0	873525..873830	+	101	187931558	-	FTM_0805	-	hypothetical protein
646	 30.02	0	873872..875077	+	401	187931559	-	FTM_0806	-	hypothetical protein
647	 34.85	0	875154..876074	+	306	187931560	-	FTM_0807	-	VacJ like lipoprotein
648	 35.11	0	876129..877934	+	601	187931561	ggt	FTM_0808	-	gamma-glutamyltranspeptidase
649	 31.48	0	877950..878705	-	251	187931562	-	FTM_0809	-	methyltransferase
650	 36.52	+1	878877..880694	-	605	187931563	-	FTM_0810	-	GTP binding translational elongation factor Tu and G family protein
651	 28.48	-1	885119..885283	+	54	187931564	-	FTM_0813	-	hypothetical membrane protein
652	 22.86	-2	885959..886168	+	69	187931565	-	FTM_0814	-	hypothetical protein
653	 33.95	0	888113..889561	+	482	187931566	-	FTM_0817	-	type I restriction-modification system, M subunit
654	 31.44	0	889551..891296	-	581	187931567	-	FTM_0818	-	hypothetical protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.