IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
480	 35.39	0	667338..669035	-	565	187931393	proS	FTM_0608	-	prolyl-tRNA synthetase
481	 29.82	0	671064..671291	-	75	187931394	-	FTM_0609	-	hypothetical protein
482	 31.47	0	671623..672159	-	178	187931395	-	FTM_0610	-	disulfide bond formation protein, DsbB family
483	 31.89	0	672866..673282	+	138	187931396	sufE	FTM_0612	-	sulfur acceptor protein SufE
484	 29.87	0	673283..674032	+	249	187931397	-	FTM_0613	-	uroporphyrinogen III synthase
485	 30.76	0	673998..675083	+	361	187931398	-	FTM_0614	-	hypothetical membrane protein
486	 29.71	0	675080..676237	+	385	187931399	-	FTM_0615	-	hypothetical membrane protein
487	 30.70	0	676251..677009	+	252	187931400	gloB	FTM_0616	-	hydroxyacylglutathione hydrolase
488	 33.19	0	677087..677794	-	235	187931401	-	FTM_0617	-	hypothetical protein
489	 30.22	0	677903..678127	+	74	187931402	feoA	FTM_0618	-	Fe2+ transport system protein A
490	 31.87	0	678144..679778	+	544	187931403	-	FTM_0619	-	hypothetical protein
491	 32.42	0	680350..681003	-	217	187931404	-	FTM_0623	-	prophage repressor protein
492	 25.32	-2	681172..681558	+	128	187931405	-	FTM_0624	-	hypothetical protein
493	 27.93	-1	681572..682441	-	289	187931406	-	FTM_0625	-	drug/metabolite exporter
494	 37.81	+1	682618..684204	+	528	187931407	gltB	FTM_0626	-	glutamate synthase domain 2
495	 31.73	0	684281..687520	+	1079	187931408	recC	FTM_0627	-	exodeoxyribonuclease V, gamma subunit
496	 32.64	0	687462..688034	+	190	187931409	-	FTM_0628	-	hypothetical protein
497	 30.38	0	688177..689565	+	462	187931410	-	FTM_0629	-	ATP-dependent DNA helicase
498	 32.40	0	689637..693290	+	1217	187931411	recB	FTM_0630	-	exodeoxyribonuclease V, beta subunit
499	 31.25	0	693256..695124	+	622	187931412	recD	FTM_0631	-	exodeoxyribonuclease V, alpha subunit
500	 34.37	0	695133..695903	-	256	187931413	-	FTM_0632	-	regulatory factor, Bvg accessory factor family
501	 32.74	0	695907..696242	-	111	187931414	panD	FTM_0633	-	aspartate 1-decarboxylase
502	 30.15	0	696236..697021	-	261	187931415	panC	FTM_0634	-	pantoate-beta-alanine ligase
503	 34.84	0	697008..697805	-	265	187931416	panB	FTM_0635	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
504	 32.91	0	697807..698523	-	238	187931417	-	FTM_0636	-	hypothetical protein
505	 35.40	0	698831..700867	+	678	187931418	ligA	FTM_0637	-	DNA ligase, NAD-dependent
506	 27.64	-1	702322..702813	+	163	187931419	-	FTM_0639	-	acetyltransferase
507	 30.37	0	702791..704071	-	426	187931420	sun	FTM_0640	-	tRNA and rRNA cytosine-C5-methylase, sun protein
508	 31.69	0	704071..704859	-	262	187931421	-	FTM_0641	-	inositol-1-monophosphatase
509	 32.00	0	705884..707083	-	399	187931422	-	FTM_0643	-	major facilitator superfamily
510	 28.82	-1	707205..707891	+	228	187931423	-	FTM_0644	-	hypothetical protein
511	 32.63	0	707881..708165	-	94	187931424	-	FTM_0645	-	hypothetical protein
512	 38.25	+1	708245..709504	-	419	187931425	fabF	FTM_0646	-	beta-ketoacyl-ACP synthase II
513	 32.98	0	709584..709868	-	94	187931426	acpP	FTM_0647	-	acyl carrier protein
514	 36.56	+1	709964..710707	-	247	187931427	fabG	FTM_0648	-	beta-ketoacyl-ACP reductase
515	 35.40	0	710721..711641	-	306	187931428	fabD	FTM_0649	-	malonyl-CoA:ACP transacylase
516	 35.91	0	711689..712660	-	323	187931429	fabH	FTM_0650	-	3-oxoacyl-[acyl-carrier-protein] synthase 3
517	 33.52	0	712757..713803	-	348	187931430	plsX	FTM_0651	-	fatty acid/phospholipid synthesis protein PlsX
518	 33.33	0	713902..714084	-	60	187931431	rpmF	FTM_0652	-	50S ribosomal protein L32
519	 28.57	-1	714128..714631	-	167	187931432	-	FTM_0653	-	hypothetical protein
520	 37.36	+1	714771..717800	+	1009	187931433	-	FTM_0654	-	fusion protein of transketolase 1, tktA, and Glyceraldehyde-3-phosphate dehydrogenase, gapA
521	 36.47	+1	717819..718997	+	392	187931434	pgk	FTM_0655	-	phosphoglycerate kinase
522	 37.23	+1	719013..720449	+	478	187931435	pyk	FTM_0656	-	pyruvate kinase
523	 39.06	+1	720465..721529	+	354	187931436	fbaA	FTM_0657	-	fructose-bisphosphate aldolase, class II, Calvin cycle subtype
524	 34.76	0	724593..725714	+	373	187931437	potG	FTM_0660	-	ATP-binding cassette putrescine uptake system, ATP-binding protein
525	 32.99	0	725714..726595	+	293	187931438	potH	FTM_0661	-	ATP-binding cassette putrescine uptake system, membrane protein, subunit H
526	 33.09	0	726609..727415	+	268	187931439	potI	FTM_0662	-	ATP-binding cassette putrescine uptake system, membrane protein, subunit I
527	 36.70	+1	728464..729741	+	425	187931440	aroA	FTM_0663	-	3-phosphoshikimate 1-carboxyvinyltransferase
528	 29.44	0	729744..730334	+	196	187931441	-	FTM_0664	-	hypothetical protein
529	 36.82	+1	730309..730767	+	152	187931442	rnhA	FTM_0665	-	Ribonuclease H
530	 33.72	0	730769..731806	+	345	187931443	ansA	FTM_0666	-	L-asparaginase 1
531	 35.37	0	731877..732563	+	228	187931444	cynT	FTM_0667	-	carbonic anhydrase
532	 24.92	-2	732850..733455	-	201	187931445	-	FTM_0668	-	hypothetical membrane protein
533	 31.39	0	733519..734391	-	290	187931446	-	FTM_0669	-	hypothetical protein
534	 39.77	+2	734400..734570	-	56	187931447	rubA	FTM_0670	-	rubredoxin
535	 31.23	0	734657..735274	-	205	187931448	-	FTM_0671	-	hypothetical protein
536	 32.26	0	735386..736777	+	463	187931449	-	FTM_0672	-	hypothetical protein
537	 33.02	0	736809..738083	-	424	187931450	-	FTM_0673	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter
538	 34.11	0	738285..739313	+	342	187931451	-	FTM_0674	-	phosphosugar binding protein
539	 32.41	0	739338..740741	+	467	187931452	-	FTM_0675	-	MFS family major facilitator transporter
540	 31.67	0	740895..741014	+	39	187931453	-	FTM_0676	-	hypothetical protein
541	 33.98	0	741128..741436	+	102	187931454	-	FTM_0677	-	IS1 transposase
542	 30.56	0	743655..743834	+	59	187931455	-	FTM_0679	-	hypothetical protein
543	 36.12	0	745851..747068	+	405	187931456	ispG	FTM_0682	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
544	 32.49	0	747083..747790	+	235	187931457	-	FTM_0683	-	hypothetical protein
545	 34.62	0	747809..749602	+	597	187931458	-	FTM_0684	-	X-prolyl aminopeptidase 2
546	 33.05	0	749700..750764	+	354	187931459	-	FTM_0685	-	DNA/RNA endonuclease G
547	 29.17	-1	750755..751618	-	287	187931460	-	FTM_0686	-	beta-lactamase class A
548	 26.19	-1	753187..753606	-	139	187931461	-	FTM_0688	-	hypothetical protein
549	 32.80	0	753852..755342	-	496	187931462	lnt	FTM_0689	-	apolipoprotein N-acyltransferase
550	 30.49	0	755342..756184	-	280	187931463	-	FTM_0690	-	transporter-associated protein, HlyC/CorC family
551	 34.97	0	756174..756662	-	162	187931464	-	FTM_0691	-	hypothetical protein
552	 36.69	+1	756655..757638	-	327	187931465	-	FTM_0692	-	PhoH family protein, putative ATPase
553	 35.44	0	757642..758970	-	442	187931466	miaB	FTM_0693	-	tRNA-methylthiotransferase MiaB protein
554	 35.11	0	759193..759867	+	224	187931467	-	FTM_0694	-	O-methyltransferase family protein
555	 34.01	0	760619..761212	+	197	187931468	tdk	FTM_0696	-	thymidine kinase
556	 28.60	-1	761255..761719	-	154	187931469	-	FTM_0697	-	hypothetical membrane protein
557	 34.24	0	761874..763190	+	438	187931470	tig	FTM_0698	-	trigger factor (TF) protein (peptidyl-prolyl cis/trans isomerase)
558	 34.32	0	763216..763821	+	201	187931471	clpP	FTM_0699	-	ATP-dependent Clp protease, proteolytic subunit ClpP
559	 32.38	0	763845..765098	+	417	187931472	clpX	FTM_0700	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
560	 34.71	0	765123..767447	+	774	187931473	lon	FTM_0701	-	ATP-dependent protease La
561	 36.63	+1	767534..767806	+	90	187931474	hupB	FTM_0702	-	DNA-binding protein HU-beta
562	 28.24	-1	767920..769353	+	477	187931475	-	FTM_0703	-	hypothetical protein
563	 33.12	0	769354..770280	+	308	187931476	miaA	FTM_0704	-	tRNA delta(2)-isopentenylpyrophosphate transferase
564	 30.61	0	770391..770720	+	109	187931477	hfq	FTM_0705	-	host factor I for bacteriophage Q beta replication
565	 33.56	0	770769..772079	+	436	187931478	hflX	FTM_0706	-	protease, GTP-binding subunit
566	 32.15	0	772090..773268	-	392	187931479	-	FTM_0707	-	oxidoreductase
567	 33.90	0	773453..774520	+	355	187931480	hflK	FTM_0708	-	HflK-HflC membrane protein complex, HflK
568	 33.44	0	774522..775448	+	308	187931481	hflC	FTM_0709	-	HflK-HflC membrane protein complex, HflC
569	 35.19	0	775449..775934	+	161	187931482	wzb	FTM_0710	-	low molecular weight (LMW) phosphotyrosine protein phosphatase
570	 32.49	0	775931..776524	+	197	187931483	engB	FTM_0711	-	ATP/GTP-binding protein
571	 30.24	0	777577..778773	-	398	187931484	-	FTM_0712	-	predicted ATPase of the PP-loop superfamily
572	 34.06	0	778774..780009	-	411	187931485	serA	FTM_0713	-	D-3-phosphoglycerate dehydrogenase
573	 34.91	0	780021..780845	-	274	187931486	thyA	FTM_0714	-	thymidylate synthase
574	 36.93	+1	780830..781636	-	268	187931487	lgt	FTM_0715	-	prolipoprotein diacylglyceryl transferase
575	 32.99	0	781651..784308	-	885	187931488	rne	FTM_0716	-	ribonuclease E
576	 35.03	0	784558..785733	+	391	187931489	iscS	FTM_0717	-	cysteine desulfurase
577	 31.52	0	785726..786055	+	109	187931490	-	FTM_0718	-	hypothetical protein
578	 28.47	-1	786039..786737	+	232	187931491	recO	FTM_0719	-	RecFOR complex, RecO component
579	 32.25	0	786813..787460	-	215	187931492	-	FTM_0720	-	DedA family protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.