IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
427	 31.90	0	588728..589771	+	347	187931340	-	FTM_0541	-	bifunctional NMN adenylyltransferase/Nudix hydrolase
428	 34.36	0	589785..591152	+	455	187931341	glmU	FTM_0542	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
429	 33.50	0	591173..593011	+	612	187931342	glmS	FTM_0543	-	Glucosamine-fructose-6-phosphate aminotransferase
430	 35.86	0	593612..593809	-	65	187931343	rpsU1	FTM_0545	-	30S ribosomal protein S21
431	 31.86	0	593809..594012	-	67	187931344	cspC	FTM_0546	-	cold shock protein, DNA-binding
432	 30.61	0	594261..594590	-	109	187931345	-	FTM_0547	-	hypothetical protein
433	 36.58	+1	594717..595487	+	256	187931346	map	FTM_0548	-	methionine aminopeptidase, type I
434	 30.74	0	595489..596337	+	282	187931347	-	FTM_0549	-	hypothetical protein
435	 33.78	0	597224..599449	+	741	187931348	parC	FTM_0551	-	DNA topoisomerase IV, A subunit
436	 33.77	0	599449..600135	+	228	187931349	mtn	FTM_0552	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
437	 24.83	-2	600122..600721	-	199	187931350	-	FTM_0553	-	hypothetical membrane protein
438	 31.81	0	600714..601832	-	372	187931351	-	FTM_0554	-	BNR/Asp-box repeat protein
439	 31.01	0	602031..604007	+	658	187931352	slt	FTM_0555	-	soluble lytic murein transglycosylase
440	 30.03	0	604021..604656	-	211	187931353	-	FTM_0556	-	hypothetical protein
441	 27.36	-1	605009..606163	+	384	187931354	-	FTM_0557	-	hypothetical membrane protein
442	 35.89	0	606520..609999	+	1159	187931355	-	FTM_0558	-	DNA polymerase III subunit alpha
443	 35.23	0	611388..612650	+	420	187931356	-	FTM_0560	-	ABC transporter, involved in lipoprotein release, permease component
444	 33.91	0	612643..613338	+	231	187931357	-	FTM_0561	-	ABC transporter, ATPase component
445	 37.14	+1	615688..616764	+	358	187931358	gcvT	FTM_0563	-	glycine cleavage complex protein T (aminomethyltransferase)
446	 38.02	+1	616821..617204	+	127	187931359	gcvH	FTM_0564	-	glycine cleavage system H protein (lipoate-binding)
447	 36.62	+1	617269..618636	+	455	187931360	gcvP1	FTM_0565	-	glycine cleavage system P protein, subunit 1
448	 38.17	+1	618642..620087	+	481	187931361	gcvP2	FTM_0566	-	glycine cleavage system P-protein, subunit 2
449	 30.97	0	620207..621052	-	281	187931362	-	FTM_0567	-	shikimate 5-dehydrogenase
450	 33.30	0	621078..624290	-	1070	187931363	glgX	FTM_0568	-	pullulanase
451	 34.69	0	624324..626246	-	640	187931364	glgB	FTM_0569	-	1,4-alpha-glucan branching enzyme
452	 36.02	0	626548..628182	+	544	187931365	pgm	FTM_0570	-	phosphoglucomutase
453	 37.19	+1	628216..629487	+	423	187931366	glgC	FTM_0571	-	glucose-1-phosphate adenylyltransferase
454	 36.80	+1	629497..630966	+	489	187931367	glgA	FTM_0572	-	glycogen synthase
455	 29.95	0	631071..633344	+	757	187931368	glgP	FTM_0573	-	glycogen phosphorylase
456	 32.24	0	633388..634851	+	487	187931369	malQ	FTM_0574	-	4-alpha-glucanotransferase
457	 37.82	+1	634943..635833	+	296	187931370	glyQ	FTM_0575	-	glycyl-tRNA synthetase, alpha subunit
458	 29.65	0	636044..637483	+	479	187931371	murE	FTM_0576	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
459	 33.06	0	637563..637922	+	119	187931372	-	FTM_0577	-	outer membrane lipoprotein
460	 33.11	0	638274..639632	+	452	187931373	murF	FTM_0578	-	d-alanyl-d-alanine-adding enzyme
461	 34.19	0	639641..640459	+	272	187931374	-	FTM_0579	-	hypothetical protein
462	 34.08	0	641682..644102	+	806	187931375	thrA	FTM_0581	-	aspartate kinase I/homoserine dehydrogenase I
463	 34.28	0	644105..645058	+	317	187931376	thrB	FTM_0582	-	homoserine kinase
464	 34.97	0	646942..647430	+	162	187931377	-	FTM_0585	-	S-adenosylmethionine decarboxylase
465	 33.10	0	647430..648299	+	289	187931378	-	FTM_0586	-	putative spermidine synthase
466	 30.00	0	648325..649734	+	469	187931379	-	FTM_0587	-	putative arginine decarboxylase
467	 34.96	0	650944..651804	+	286	187931380	-	FTM_0589	-	hydrolase, carbon-nitrogen family
468	 31.10	0	651821..652537	-	238	187931381	lpxH	FTM_0590	-	UDP-2,3-diacylglucosamine hydrolase
469	 33.65	0	652527..653153	-	208	187931382	pyrE	FTM_0591	-	orotate phosphoribosyltransferase
470	 31.95	0	653313..654683	+	456	187931383	mpl	FTM_0592	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
471	 36.67	+1	656238..656537	+	99	187931384	-	FTM_0594	-	transcriptional regulator, ArsR family
472	 35.52	0	658880..659566	+	228	187931385	-	FTM_0597	-	Zn-dependent hydrolase
473	 30.43	0	660309..660929	-	206	187931386	-	FTM_0599	-	oxidoreductase
474	 32.44	0	660969..661418	-	149	187931387	-	FTM_0600	-	hypothetical protein
475	 33.58	0	662165..662566	-	133	187931388	-	FTM_0602	-	hypothetical protein
476	 33.80	0	662753..663178	+	141	187931389	nusB	FTM_0603	-	transcription antitermination factor NusB
477	 33.59	0	663162..663932	-	256	187931390	-	FTM_0604	-	carbon-nitrogen hydrolase
478	 32.37	0	664101..664514	+	137	187931391	-	FTM_0605	-	lipoprotein, putative
479	 34.83	0	666059..667192	-	377	187931392	-	FTM_0607	-	aspartate/tyrosine/aromatic aminotransferase
480	 35.39	0	667338..669035	-	565	187931393	proS	FTM_0608	-	prolyl-tRNA synthetase
481	 29.82	0	671064..671291	-	75	187931394	-	FTM_0609	-	hypothetical protein
482	 31.47	0	671623..672159	-	178	187931395	-	FTM_0610	-	disulfide bond formation protein, DsbB family
483	 31.89	0	672866..673282	+	138	187931396	sufE	FTM_0612	-	sulfur acceptor protein SufE
484	 29.87	0	673283..674032	+	249	187931397	-	FTM_0613	-	uroporphyrinogen III synthase
485	 30.76	0	673998..675083	+	361	187931398	-	FTM_0614	-	hypothetical membrane protein
486	 29.71	0	675080..676237	+	385	187931399	-	FTM_0615	-	hypothetical membrane protein
487	 30.70	0	676251..677009	+	252	187931400	gloB	FTM_0616	-	hydroxyacylglutathione hydrolase
488	 33.19	0	677087..677794	-	235	187931401	-	FTM_0617	-	hypothetical protein
489	 30.22	0	677903..678127	+	74	187931402	feoA	FTM_0618	-	Fe2+ transport system protein A
490	 31.87	0	678144..679778	+	544	187931403	-	FTM_0619	-	hypothetical protein
491	 32.42	0	680350..681003	-	217	187931404	-	FTM_0623	-	prophage repressor protein
492	 25.32	-2	681172..681558	+	128	187931405	-	FTM_0624	-	hypothetical protein
493	 27.93	-1	681572..682441	-	289	187931406	-	FTM_0625	-	drug/metabolite exporter
494	 37.81	+1	682618..684204	+	528	187931407	gltB	FTM_0626	-	glutamate synthase domain 2
495	 31.73	0	684281..687520	+	1079	187931408	recC	FTM_0627	-	exodeoxyribonuclease V, gamma subunit
496	 32.64	0	687462..688034	+	190	187931409	-	FTM_0628	-	hypothetical protein
497	 30.38	0	688177..689565	+	462	187931410	-	FTM_0629	-	ATP-dependent DNA helicase
498	 32.40	0	689637..693290	+	1217	187931411	recB	FTM_0630	-	exodeoxyribonuclease V, beta subunit
499	 31.25	0	693256..695124	+	622	187931412	recD	FTM_0631	-	exodeoxyribonuclease V, alpha subunit
500	 34.37	0	695133..695903	-	256	187931413	-	FTM_0632	-	regulatory factor, Bvg accessory factor family
501	 32.74	0	695907..696242	-	111	187931414	panD	FTM_0633	-	aspartate 1-decarboxylase
502	 30.15	0	696236..697021	-	261	187931415	panC	FTM_0634	-	pantoate-beta-alanine ligase
503	 34.84	0	697008..697805	-	265	187931416	panB	FTM_0635	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
504	 32.91	0	697807..698523	-	238	187931417	-	FTM_0636	-	hypothetical protein
505	 35.40	0	698831..700867	+	678	187931418	ligA	FTM_0637	-	DNA ligase, NAD-dependent
506	 27.64	-1	702322..702813	+	163	187931419	-	FTM_0639	-	acetyltransferase
507	 30.37	0	702791..704071	-	426	187931420	sun	FTM_0640	-	tRNA and rRNA cytosine-C5-methylase, sun protein
508	 31.69	0	704071..704859	-	262	187931421	-	FTM_0641	-	inositol-1-monophosphatase
509	 32.00	0	705884..707083	-	399	187931422	-	FTM_0643	-	major facilitator superfamily
510	 28.82	-1	707205..707891	+	228	187931423	-	FTM_0644	-	hypothetical protein
511	 32.63	0	707881..708165	-	94	187931424	-	FTM_0645	-	hypothetical protein
512	 38.25	+1	708245..709504	-	419	187931425	fabF	FTM_0646	-	beta-ketoacyl-ACP synthase II
513	 32.98	0	709584..709868	-	94	187931426	acpP	FTM_0647	-	acyl carrier protein
514	 36.56	+1	709964..710707	-	247	187931427	fabG	FTM_0648	-	beta-ketoacyl-ACP reductase
515	 35.40	0	710721..711641	-	306	187931428	fabD	FTM_0649	-	malonyl-CoA:ACP transacylase
516	 35.91	0	711689..712660	-	323	187931429	fabH	FTM_0650	-	3-oxoacyl-[acyl-carrier-protein] synthase 3
517	 33.52	0	712757..713803	-	348	187931430	plsX	FTM_0651	-	fatty acid/phospholipid synthesis protein PlsX
518	 33.33	0	713902..714084	-	60	187931431	rpmF	FTM_0652	-	50S ribosomal protein L32
519	 28.57	-1	714128..714631	-	167	187931432	-	FTM_0653	-	hypothetical protein
520	 37.36	+1	714771..717800	+	1009	187931433	-	FTM_0654	-	fusion protein of transketolase 1, tktA, and Glyceraldehyde-3-phosphate dehydrogenase, gapA
521	 36.47	+1	717819..718997	+	392	187931434	pgk	FTM_0655	-	phosphoglycerate kinase
522	 37.23	+1	719013..720449	+	478	187931435	pyk	FTM_0656	-	pyruvate kinase
523	 39.06	+1	720465..721529	+	354	187931436	fbaA	FTM_0657	-	fructose-bisphosphate aldolase, class II, Calvin cycle subtype
524	 34.76	0	724593..725714	+	373	187931437	potG	FTM_0660	-	ATP-binding cassette putrescine uptake system, ATP-binding protein
525	 32.99	0	725714..726595	+	293	187931438	potH	FTM_0661	-	ATP-binding cassette putrescine uptake system, membrane protein, subunit H
526	 33.09	0	726609..727415	+	268	187931439	potI	FTM_0662	-	ATP-binding cassette putrescine uptake system, membrane protein, subunit I
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.