IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
377	 37.64	+1	522866..523306	-	146	187931290	-	FTM_0477	-	Type IV pili, pilus assembly protein
378	 40.93	+2	523437..523844	-	135	187931291	pilA	FTM_0478	-	Type IV pili, pilus assembly protein
379	 33.33	0	524226..524945	+	239	187931292	lpxE	FTM_0479	-	lipid A 1-phosphatase
380	 37.22	+1	525084..525932	+	282	187931293	folD	FTM_0480	-	methyleneTHF enzyme/ methenyltetrahydrofolate cyclohydrolase/ methylenetetrahydrofolate dehydrogenase
381	 37.36	+1	526166..527209	+	347	187931294	purM	FTM_0481	-	phosphoribosylformylglycinamidine cyclo-ligase
382	 36.14	0	527209..529521	+	770	187931295	-	FTM_0482	-	saicar synthetase/phosphoribosylamine-glycine ligase
383	 34.72	0	529525..530100	+	191	187931296	purN	FTM_0483	-	phosphoribosylglycinamide formyltransferase
384	 39.23	+1	530217..530708	+	163	187931297	purE	FTM_0484	-	N5-carboxyaminoimidazole ribonucleotide mutase
385	 36.43	+1	530712..531809	+	365	187931298	purK	FTM_0485	-	N5-carboxyaminoimidazole ribonucleotide synthase monomer
386	 32.20	0	531806..532159	-	117	187931299	-	FTM_0486	-	hypothetical protein
387	 33.88	0	532226..534247	-	673	187931300	prlC	FTM_0487	-	oligopeptidase A
388	 30.65	0	534339..534710	+	123	187931301	-	FTM_0488	-	13 kDa major membrane protein
389	 37.11	+1	534786..535235	+	149	187931302	-	FTM_0489	-	hypothetical protein
390	 32.71	0	535392..535871	+	159	187931303	-	FTM_0490	-	lipoprotein, putative
391	 33.12	0	536507..536974	+	155	187931304	-	FTM_0492	-	hypothetical protein
392	 30.42	0	537047..538489	+	480	187931305	-	FTM_0493	-	hypothetical protein
393	 34.68	0	538543..540837	-	764	187931306	topA	FTM_0494	-	DNA topoisomerase I
394	 36.29	+1	541036..541677	+	213	187931307	parA	FTM_0495	-	chmomosome partition protein A
395	 34.32	0	541670..542584	+	304	187931308	parB	FTM_0496	-	chromosome partition protein B
396	 32.77	0	542598..543305	+	235	187931309	-	FTM_0497	-	glutamine amidotransferase, class I
397	 31.52	0	543308..544189	+	293	187931310	-	FTM_0498	-	lipolytic enzyme
398	 33.33	0	544835..545455	-	206	187931311	rrmJ	FTM_0500	-	23S rRNA methylase
399	 30.98	0	545613..546080	+	155	187931312	-	FTM_0501	-	hypothetical protein
400	 29.84	0	546075..546560	-	161	187931313	lspA	FTM_0502	-	signal peptidase II
401	 35.68	0	546547..549354	-	935	187931314	ileS	FTM_0503	-	isoleucyl-tRNA synthetase
402	 30.62	0	549447..550367	-	306	187931315	ribF	FTM_0504	-	riboflavin kinase/FMN adenylyltransferase
403	 35.26	0	550518..552332	+	604	187931316	maeA	FTM_0505	-	NAD-dependent malic enzyme
404	 39.31	+1	552495..554168	+	557	187931317	-	FTM_0506	-	lipoprotein, putative
405	 34.44	0	554185..555630	+	481	187931318	-	FTM_0507	-	hypothetical protein
406	 36.61	+1	557523..558041	+	172	187931319	-	FTM_0509	-	hypothetical protein
407	 35.34	0	558258..559655	+	465	187931320	engA	FTM_0510	-	GTP-binding protein
408	 32.18	0	559624..560928	+	434	187931321	murA	FTM_0511	-	UDP-N-acetylglucosamine enolpyruvoyl transferase
409	 30.74	0	560936..561784	+	282	187931322	murB	FTM_0512	-	UDP-N-acetylmuramate dehydrogenase
410	 30.82	0	561863..562738	+	291	187931323	-	FTM_0513	-	hypothetical protein
411	 29.21	-1	562740..563516	-	258	187931324	-	FTM_0514	-	hypothetical protein
412	 32.15	0	564707..565045	-	112	187931325	hitA	FTM_0516	-	histidine triad (HIT) family protein
413	 33.57	0	565051..566709	-	552	187931326	ubiB	FTM_0517	-	2-octaprenylphenol hydroxylase
414	 30.10	0	566702..567289	-	195	187931327	-	FTM_0518	-	hypothetical protein
415	 35.06	0	567291..568043	-	250	187931328	ubiE	FTM_0519	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
416	 35.59	0	568137..569153	+	338	187931329	glk	FTM_0520	-	glucokinase
417	 29.38	-1	569467..569997	-	176	187931330	ispZ	FTM_0521	-	intracellular septation protein A family protein
418	 31.87	0	570058..570672	+	204	187931331	-	FTM_0522	-	Sua5/YciO/YrdC family protein
419	 31.18	0	570722..571324	+	200	187931332	-	FTM_0523	-	hypothetical protein
420	 33.33	0	571321..572544	-	407	187931333	-	FTM_0524	-	major facilitator superfamily
421	 24.81	-2	575575..575832	-	85	187931334	-	FTM_0529	-	hypothetical protein
422	 28.12	-1	582489..583544	-	351	187931335	-	FTM_0536	-	hypothetical protein
423	 29.53	0	583677..584333	-	218	187931336	-	FTM_0537	-	metallopeptidase, M50B family
424	 32.14	0	586480..586815	+	111	187931337	-	FTM_0538	-	hypothetical protein
425	 28.87	-1	586788..587639	-	283	187931338	psd	FTM_0539	-	phosphatidylserine decarboxylase, proenzyme
426	 31.60	0	587739..588719	+	326	187931339	-	FTM_0540	-	hypothetical protein
427	 31.90	0	588728..589771	+	347	187931340	-	FTM_0541	-	bifunctional NMN adenylyltransferase/Nudix hydrolase
428	 34.36	0	589785..591152	+	455	187931341	glmU	FTM_0542	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
429	 33.50	0	591173..593011	+	612	187931342	glmS	FTM_0543	-	Glucosamine-fructose-6-phosphate aminotransferase
430	 35.86	0	593612..593809	-	65	187931343	rpsU1	FTM_0545	-	30S ribosomal protein S21
431	 31.86	0	593809..594012	-	67	187931344	cspC	FTM_0546	-	cold shock protein, DNA-binding
432	 30.61	0	594261..594590	-	109	187931345	-	FTM_0547	-	hypothetical protein
433	 36.58	+1	594717..595487	+	256	187931346	map	FTM_0548	-	methionine aminopeptidase, type I
434	 30.74	0	595489..596337	+	282	187931347	-	FTM_0549	-	hypothetical protein
435	 33.78	0	597224..599449	+	741	187931348	parC	FTM_0551	-	DNA topoisomerase IV, A subunit
436	 33.77	0	599449..600135	+	228	187931349	mtn	FTM_0552	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
437	 24.83	-2	600122..600721	-	199	187931350	-	FTM_0553	-	hypothetical membrane protein
438	 31.81	0	600714..601832	-	372	187931351	-	FTM_0554	-	BNR/Asp-box repeat protein
439	 31.01	0	602031..604007	+	658	187931352	slt	FTM_0555	-	soluble lytic murein transglycosylase
440	 30.03	0	604021..604656	-	211	187931353	-	FTM_0556	-	hypothetical protein
441	 27.36	-1	605009..606163	+	384	187931354	-	FTM_0557	-	hypothetical membrane protein
442	 35.89	0	606520..609999	+	1159	187931355	-	FTM_0558	-	DNA polymerase III subunit alpha
443	 35.23	0	611388..612650	+	420	187931356	-	FTM_0560	-	ABC transporter, involved in lipoprotein release, permease component
444	 33.91	0	612643..613338	+	231	187931357	-	FTM_0561	-	ABC transporter, ATPase component
445	 37.14	+1	615688..616764	+	358	187931358	gcvT	FTM_0563	-	glycine cleavage complex protein T (aminomethyltransferase)
446	 38.02	+1	616821..617204	+	127	187931359	gcvH	FTM_0564	-	glycine cleavage system H protein (lipoate-binding)
447	 36.62	+1	617269..618636	+	455	187931360	gcvP1	FTM_0565	-	glycine cleavage system P protein, subunit 1
448	 38.17	+1	618642..620087	+	481	187931361	gcvP2	FTM_0566	-	glycine cleavage system P-protein, subunit 2
449	 30.97	0	620207..621052	-	281	187931362	-	FTM_0567	-	shikimate 5-dehydrogenase
450	 33.30	0	621078..624290	-	1070	187931363	glgX	FTM_0568	-	pullulanase
451	 34.69	0	624324..626246	-	640	187931364	glgB	FTM_0569	-	1,4-alpha-glucan branching enzyme
452	 36.02	0	626548..628182	+	544	187931365	pgm	FTM_0570	-	phosphoglucomutase
453	 37.19	+1	628216..629487	+	423	187931366	glgC	FTM_0571	-	glucose-1-phosphate adenylyltransferase
454	 36.80	+1	629497..630966	+	489	187931367	glgA	FTM_0572	-	glycogen synthase
455	 29.95	0	631071..633344	+	757	187931368	glgP	FTM_0573	-	glycogen phosphorylase
456	 32.24	0	633388..634851	+	487	187931369	malQ	FTM_0574	-	4-alpha-glucanotransferase
457	 37.82	+1	634943..635833	+	296	187931370	glyQ	FTM_0575	-	glycyl-tRNA synthetase, alpha subunit
458	 29.65	0	636044..637483	+	479	187931371	murE	FTM_0576	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
459	 33.06	0	637563..637922	+	119	187931372	-	FTM_0577	-	outer membrane lipoprotein
460	 33.11	0	638274..639632	+	452	187931373	murF	FTM_0578	-	d-alanyl-d-alanine-adding enzyme
461	 34.19	0	639641..640459	+	272	187931374	-	FTM_0579	-	hypothetical protein
462	 34.08	0	641682..644102	+	806	187931375	thrA	FTM_0581	-	aspartate kinase I/homoserine dehydrogenase I
463	 34.28	0	644105..645058	+	317	187931376	thrB	FTM_0582	-	homoserine kinase
464	 34.97	0	646942..647430	+	162	187931377	-	FTM_0585	-	S-adenosylmethionine decarboxylase
465	 33.10	0	647430..648299	+	289	187931378	-	FTM_0586	-	putative spermidine synthase
466	 30.00	0	648325..649734	+	469	187931379	-	FTM_0587	-	putative arginine decarboxylase
467	 34.96	0	650944..651804	+	286	187931380	-	FTM_0589	-	hydrolase, carbon-nitrogen family
468	 31.10	0	651821..652537	-	238	187931381	lpxH	FTM_0590	-	UDP-2,3-diacylglucosamine hydrolase
469	 33.65	0	652527..653153	-	208	187931382	pyrE	FTM_0591	-	orotate phosphoribosyltransferase
470	 31.95	0	653313..654683	+	456	187931383	mpl	FTM_0592	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
471	 36.67	+1	656238..656537	+	99	187931384	-	FTM_0594	-	transcriptional regulator, ArsR family
472	 35.52	0	658880..659566	+	228	187931385	-	FTM_0597	-	Zn-dependent hydrolase
473	 30.43	0	660309..660929	-	206	187931386	-	FTM_0599	-	oxidoreductase
474	 32.44	0	660969..661418	-	149	187931387	-	FTM_0600	-	hypothetical protein
475	 33.58	0	662165..662566	-	133	187931388	-	FTM_0602	-	hypothetical protein
476	 33.80	0	662753..663178	+	141	187931389	nusB	FTM_0603	-	transcription antitermination factor NusB
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.