IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
302	 29.12	-1	428894..429439	+	181	187931215	-	FTM_0382	-	phosphatidyltransferase
303	 38.19	+1	430639..431565	+	308	187931216	-	FTM_0385	-	subunit of DnaJ/DnaK/GrpE: chaperone with DnaK; heat shock protein
304	 31.98	0	431555..432439	-	294	187931217	-	FTM_0386	-	10 TMS drug/metabolite exporter protein
305	 28.57	-1	433532..433888	+	118	187931218	-	FTM_0388	-	hypothetical protein
306	 34.13	0	434192..436201	+	669	187931219	relA	FTM_0389	-	GDP pyrophosphokinase/GTP pyrophosphokinase
307	 34.44	0	436317..436949	-	210	187931220	-	FTM_0390	-	hypothetical protein
308	 28.46	-1	437695..438309	+	204	187931221	-	FTM_0392	-	hypothetical membrane protein
309	 29.89	0	438316..439041	-	241	187931222	-	FTM_0393	-	hypothetical protein
310	 32.65	0	439041..439919	-	292	187931223	xerC	FTM_0394	-	site-specific recombinase
311	 31.80	0	439929..441101	-	390	187931224	-	FTM_0395	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
312	 30.18	0	442579..443022	-	147	187931225	secB2	FTM_0397	-	preprotein translocase, subunit B
313	 33.33	0	443099..445633	-	844	187931226	mutS	FTM_0398	-	DNA mismatch repair protein MutS
314	 35.65	0	445800..446747	+	315	187931227	accA	FTM_0399	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
315	 33.13	0	446767..447270	+	167	187931228	-	FTM_0400	-	pilus assembly protein
316	 31.36	0	447251..448264	+	337	187931229	-	FTM_0401	-	pilus assembly protein
317	 31.86	0	448273..450237	+	654	187931230	-	FTM_0402	-	hypothetical membrane protein
318	 33.11	0	450234..451118	+	294	187931231	-	FTM_0403	-	glucokinase regulatory protein
319	 33.59	0	451120..451512	+	130	187931232	-	FTM_0404	-	hypothetical protein
320	 32.64	0	454242..455540	-	432	187931233	-	FTM_0406	-	monovalent cation:proton antiporter-1
321	 33.20	0	455550..456275	-	241	187931234	-	FTM_0407	-	hypothetical protein
322	 34.63	0	456277..457281	-	334	187931235	trpS	FTM_0408	-	tryptophanyl-tRNA synthetase
323	 31.06	0	457578..458192	-	204	187931236	coaE	FTM_0411	-	dephospho-CoA kinase
324	 32.45	0	458321..459457	+	378	187931237	-	FTM_0412	-	hypothetical protein
325	 38.26	+1	459757..462438	+	893	187931238	aceE	FTM_0413	-	pyruvate dehydrogenase E1 component, homodimeric type
326	 37.69	+1	462456..464039	+	527	187931239	aceF	FTM_0414	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
327	 39.37	+1	464053..465477	+	474	187931240	lpdA	FTM_0415	-	pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase
328	 29.48	0	466696..467343	+	215	187931241	-	FTM_0416	-	MutT/nudix family protein
329	 32.49	0	467361..467714	+	117	187931242	-	FTM_0417	-	arsenate reductase
330	 37.20	+1	467738..468073	-	111	187931243	-	FTM_0418	-	lipoprotein, putative
331	 33.87	0	468573..469886	-	437	187931244	-	FTM_0419	-	permease
332	 33.77	0	469953..471539	-	528	187931245	-	FTM_0420	-	aminotransferase
333	 31.66	0	474447..475700	-	417	187931246	-	FTM_0423	-	OmpA family protein
334	 34.19	0	475892..476356	+	154	187931247	fkpB	FTM_0424	-	fkbp-type 16 kda peptidyl-prolyl cis-transisomerase
335	 37.10	+1	476337..477293	+	318	187931248	lytB	FTM_0425	-	1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate reductase
336	 35.26	0	477295..477657	+	120	187931249	aroH	FTM_0426	-	chorismate mutase
337	 31.87	0	477666..478487	+	273	187931250	pssA	FTM_0427	-	phosphatidylserine synthase
338	 41.78	+2	478492..478716	-	74	187931251	-	FTM_0428	-	lipoprotein, putative
339	 34.89	0	478869..479576	+	235	187931252	tolQ	FTM_0429	-	group A colicin translocation; tolQ protein
340	 34.69	0	479592..480032	+	146	187931253	tolR	FTM_0430	-	group A colicin translocation; tolR protein
341	 33.56	0	480019..480906	+	295	187931254	tolA	FTM_0431	-	group A colicin translocation; tolA protein
342	 32.26	0	480918..482225	+	435	187931255	tolB	FTM_0432	-	group A colicin translocation; tolB protein
343	 35.37	0	482235..482480	+	81	187931256	-	FTM_0433	-	lipoprotein, putative
344	 34.46	0	482499..483122	+	207	187931257	pal	FTM_0434	-	peptidoglycan-associated lipoprotein
345	 35.55	0	484653..485375	+	240	187931258	-	FTM_0436	-	short-chain dehydrogenase/reductase SDR
346	 34.38	0	485438..485629	+	63	187931259	-	FTM_0437	-	hypothetical protein
347	 34.27	0	485610..487109	+	499	187931260	-	FTM_0438	-	deoxyribodipyrimidine photolyase
348	 30.54	0	488896..489825	+	309	187931261	-	FTM_0440	-	bile acid symporter family protein
349	 32.28	0	490519..491277	+	252	187931262	-	FTM_0442	-	domain of unknown function, putative
350	 34.85	0	491814..492800	+	328	187931263	-	FTM_0444	-	hypothetical protein
351	 30.03	0	493061..494209	+	382	187931264	-	FTM_0445	-	arsenite permease family protein
352	 31.21	0	494188..494610	-	140	187931265	-	FTM_0446	-	hypothetical protein
353	 28.33	-1	494630..494989	-	119	187931266	-	FTM_0447	-	hypothetical protein
354	 28.54	-1	495003..495857	-	284	187931267	ubiA	FTM_0448	-	4-hydroxybenzoate polyprenyl transferase
355	 28.80	-1	495860..496366	-	168	187931268	ubiC	FTM_0449	-	chorismate pyruvate lyase
356	 39.12	+1	496465..497172	+	235	187931269	-	FTM_0450	-	ribonuclease PH
357	 28.40	-1	497226..497549	-	107	187931270	-	FTM_0451	-	hypothetical protein
358	 32.77	0	498666..499739	-	357	187931271	htpX	FTM_0453	-	Zn-dependent protease with chaperone function
359	 32.81	0	499743..500318	-	191	187931272	-	FTM_0454	-	LemA-like protein
360	 34.38	0	501402..502457	+	351	187931273	-	FTM_0456	-	hypothetical protein
361	 32.79	0	503853..504218	-	121	187931274	-	FTM_0458	-	transcriptional regulator, ArsR family
362	 36.24	0	505334..506332	+	332	187931275	gpsA	FTM_0460	-	glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
363	 31.66	0	506333..506869	-	178	187931276	-	FTM_0461	-	hypothetical protein
364	 36.47	+1	506874..508244	-	456	187931277	radA	FTM_0462	-	DNA repair protein RadA
365	 31.78	0	508252..509022	-	256	187931278	-	FTM_0463	-	hypothetical protein
366	 30.67	0	509019..509618	-	199	187931279	-	FTM_0464	-	hypothetical membrane protein
367	 38.53	+1	509621..510679	-	352	187931280	aroC	FTM_0465	-	chorismate synthase
368	 28.59	-1	510819..511472	-	217	187931281	-	FTM_0466	-	hypothetical membrane protein
369	 35.09	0	511487..511999	-	170	187931282	-	FTM_0467	-	peptide methionine sulfoxide reductase-related protein
370	 41.22	+2	512160..512717	+	185	187931283	sodC	FTM_0468	-	copper/zinc superoxide dismutase
371	 33.59	0	512721..513512	+	263	187931284	-	FTM_0469	-	sterol desaturase
372	 35.84	0	513487..514881	-	464	187931285	-	FTM_0470	-	amino acid transporter (AAT) family protein
373	 39.80	+2	515486..516598	+	370	187931286	-	FTM_0472	-	Zn-dependent alcohol dehydrogenase
374	 37.03	+1	516647..517837	-	396	187931287	-	FTM_0473	-	aspartate/tyrosine/aromatic aminotransferase
375	 30.86	0	518040..518927	+	295	187931288	-	FTM_0474	-	cation diffusion facilitator (CDF) family protein
376	 36.06	0	519013..520662	+	549	187931289	recN	FTM_0475	-	DNA repair protein RecN
377	 37.64	+1	522866..523306	-	146	187931290	-	FTM_0477	-	Type IV pili, pilus assembly protein
378	 40.93	+2	523437..523844	-	135	187931291	pilA	FTM_0478	-	Type IV pili, pilus assembly protein
379	 33.33	0	524226..524945	+	239	187931292	lpxE	FTM_0479	-	lipid A 1-phosphatase
380	 37.22	+1	525084..525932	+	282	187931293	folD	FTM_0480	-	methyleneTHF enzyme/ methenyltetrahydrofolate cyclohydrolase/ methylenetetrahydrofolate dehydrogenase
381	 37.36	+1	526166..527209	+	347	187931294	purM	FTM_0481	-	phosphoribosylformylglycinamidine cyclo-ligase
382	 36.14	0	527209..529521	+	770	187931295	-	FTM_0482	-	saicar synthetase/phosphoribosylamine-glycine ligase
383	 34.72	0	529525..530100	+	191	187931296	purN	FTM_0483	-	phosphoribosylglycinamide formyltransferase
384	 39.23	+1	530217..530708	+	163	187931297	purE	FTM_0484	-	N5-carboxyaminoimidazole ribonucleotide mutase
385	 36.43	+1	530712..531809	+	365	187931298	purK	FTM_0485	-	N5-carboxyaminoimidazole ribonucleotide synthase monomer
386	 32.20	0	531806..532159	-	117	187931299	-	FTM_0486	-	hypothetical protein
387	 33.88	0	532226..534247	-	673	187931300	prlC	FTM_0487	-	oligopeptidase A
388	 30.65	0	534339..534710	+	123	187931301	-	FTM_0488	-	13 kDa major membrane protein
389	 37.11	+1	534786..535235	+	149	187931302	-	FTM_0489	-	hypothetical protein
390	 32.71	0	535392..535871	+	159	187931303	-	FTM_0490	-	lipoprotein, putative
391	 33.12	0	536507..536974	+	155	187931304	-	FTM_0492	-	hypothetical protein
392	 30.42	0	537047..538489	+	480	187931305	-	FTM_0493	-	hypothetical protein
393	 34.68	0	538543..540837	-	764	187931306	topA	FTM_0494	-	DNA topoisomerase I
394	 36.29	+1	541036..541677	+	213	187931307	parA	FTM_0495	-	chmomosome partition protein A
395	 34.32	0	541670..542584	+	304	187931308	parB	FTM_0496	-	chromosome partition protein B
396	 32.77	0	542598..543305	+	235	187931309	-	FTM_0497	-	glutamine amidotransferase, class I
397	 31.52	0	543308..544189	+	293	187931310	-	FTM_0498	-	lipolytic enzyme
398	 33.33	0	544835..545455	-	206	187931311	rrmJ	FTM_0500	-	23S rRNA methylase
399	 30.98	0	545613..546080	+	155	187931312	-	FTM_0501	-	hypothetical protein
400	 29.84	0	546075..546560	-	161	187931313	lspA	FTM_0502	-	signal peptidase II
401	 35.68	0	546547..549354	-	935	187931314	ileS	FTM_0503	-	isoleucyl-tRNA synthetase
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.