IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
268	 29.54	0	373225..373989	-	254	187931181	pcs	FTM_0336	-	(CDP-alcohol) phosphatidyltransferase
269	 30.16	0	374037..374918	-	293	187931182	ispA	FTM_0337	-	geranyl diphosphate synthase/farnesyl diphosphate synthase
270	 30.94	0	374915..376210	-	431	187931183	kdtA	FTM_0338	-	3-deoxy-D-manno-octulosonic-acid transferase
271	 33.51	0	376315..376893	-	192	187931184	-	FTM_0339	-	RgdB/HAM1 family protein
272	 31.95	0	377000..377797	+	265	187931185	proC	FTM_0340	-	pyrroline-5-carboxylate reductase
273	 31.88	0	379560..380246	+	228	187931186	-	FTM_0342	-	two-component response regulator
274	 32.99	0	380251..381114	+	287	187931187	lepB	FTM_0343	-	signal peptidase I
275	 33.19	0	381121..381813	+	230	187931188	rnc	FTM_0344	-	ribonuclease III
276	 31.90	0	381800..382708	+	302	187931189	truB	FTM_0345	-	tRNA pseudouridine synthase B
277	 33.90	0	382701..384998	+	765	187931190	rnr	FTM_0346	-	ribonuclease R
278	 32.80	0	385455..386198	-	247	187931191	-	FTM_0348	-	oxidoreductase
279	 29.96	0	386781..387254	-	157	187931192	-	FTM_0350	-	hypothetical protein
280	 34.20	0	392469..393158	-	229	187931193	-	FTM_0355	-	two component response regulator
281	 33.33	0	393301..393840	+	179	187931194	-	FTM_0356	-	hypothetical membrane protein
282	 29.85	0	393958..394359	+	133	187931195	-	FTM_0357	-	hypothetical membrane protein
283	 34.81	0	394534..395142	+	202	187931196	-	FTM_0358	-	lipoprotein, putative
284	 36.06	0	395199..396629	+	476	187931197	-	FTM_0359	-	hypothetical protein
285	 33.84	0	396640..397623	+	327	187931198	-	FTM_0360	-	hypothetical protein
286	 32.97	0	397629..399023	+	464	187931199	-	FTM_0361	-	lipoprotein, putative
287	 31.37	0	399163..400077	+	304	187931200	-	FTM_0362	-	hypothetical protein
288	 33.26	0	401409..402824	+	471	187931201	-	FTM_0364	-	nicotinamide phosphoribosyltransferase
289	 32.92	0	404402..404890	-	162	187931202	-	FTM_0366	-	thioesterase family protein
290	 38.72	+1	404952..406139	-	395	187931203	fadA	FTM_0367	-	acetyl-CoA acetyltransferase
291	 36.34	+1	406152..408848	-	898	187931204	-	FTM_0368	-	bifunctional protein: 3-hydroxacyl-CoA dehydrogenase/acyl-CoA-binding protein
292	 37.53	+1	408921..411161	-	746	187931205	fadE	FTM_0369	-	acyl-coenzyme A dehydrogenase
293	 34.28	0	411199..412887	-	562	187931206	fadD	FTM_0370	-	long chain fatty acid-CoA ligase
294	 30.00	0	413031..413450	+	139	187931207	-	FTM_0371	-	arsenate reductase
295	 35.45	0	413499..415715	+	738	187931208	icd	FTM_0372	-	isocitrate dehydrogenase, NADP-dependent
296	 28.60	-1	415729..416616	+	295	187931209	-	FTM_0373	-	hypothetical membrane protein
297	 32.98	0	416640..420908	+	1422	187931210	hrpA	FTM_0374	-	ATP-dependent helicase HrpA
298	 32.75	0	422409..423092	+	227	187931211	-	FTM_0375	-	hypothetical protein
299	 31.41	0	426155..426727	-	190	187931212	-	FTM_0379	-	methylated DNA protein cysteine methyltransferase
300	 32.36	0	426757..427476	+	239	187931213	-	FTM_0380	-	snare associated golgi protein
301	 33.83	0	427479..428897	+	472	187931214	-	FTM_0381	-	dihydrolipoamide dehydrogenase
302	 29.12	-1	428894..429439	+	181	187931215	-	FTM_0382	-	phosphatidyltransferase
303	 38.19	+1	430639..431565	+	308	187931216	-	FTM_0385	-	subunit of DnaJ/DnaK/GrpE: chaperone with DnaK; heat shock protein
304	 31.98	0	431555..432439	-	294	187931217	-	FTM_0386	-	10 TMS drug/metabolite exporter protein
305	 28.57	-1	433532..433888	+	118	187931218	-	FTM_0388	-	hypothetical protein
306	 34.13	0	434192..436201	+	669	187931219	relA	FTM_0389	-	GDP pyrophosphokinase/GTP pyrophosphokinase
307	 34.44	0	436317..436949	-	210	187931220	-	FTM_0390	-	hypothetical protein
308	 28.46	-1	437695..438309	+	204	187931221	-	FTM_0392	-	hypothetical membrane protein
309	 29.89	0	438316..439041	-	241	187931222	-	FTM_0393	-	hypothetical protein
310	 32.65	0	439041..439919	-	292	187931223	xerC	FTM_0394	-	site-specific recombinase
311	 31.80	0	439929..441101	-	390	187931224	-	FTM_0395	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
312	 30.18	0	442579..443022	-	147	187931225	secB2	FTM_0397	-	preprotein translocase, subunit B
313	 33.33	0	443099..445633	-	844	187931226	mutS	FTM_0398	-	DNA mismatch repair protein MutS
314	 35.65	0	445800..446747	+	315	187931227	accA	FTM_0399	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
315	 33.13	0	446767..447270	+	167	187931228	-	FTM_0400	-	pilus assembly protein
316	 31.36	0	447251..448264	+	337	187931229	-	FTM_0401	-	pilus assembly protein
317	 31.86	0	448273..450237	+	654	187931230	-	FTM_0402	-	hypothetical membrane protein
318	 33.11	0	450234..451118	+	294	187931231	-	FTM_0403	-	glucokinase regulatory protein
319	 33.59	0	451120..451512	+	130	187931232	-	FTM_0404	-	hypothetical protein
320	 32.64	0	454242..455540	-	432	187931233	-	FTM_0406	-	monovalent cation:proton antiporter-1
321	 33.20	0	455550..456275	-	241	187931234	-	FTM_0407	-	hypothetical protein
322	 34.63	0	456277..457281	-	334	187931235	trpS	FTM_0408	-	tryptophanyl-tRNA synthetase
323	 31.06	0	457578..458192	-	204	187931236	coaE	FTM_0411	-	dephospho-CoA kinase
324	 32.45	0	458321..459457	+	378	187931237	-	FTM_0412	-	hypothetical protein
325	 38.26	+1	459757..462438	+	893	187931238	aceE	FTM_0413	-	pyruvate dehydrogenase E1 component, homodimeric type
326	 37.69	+1	462456..464039	+	527	187931239	aceF	FTM_0414	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
327	 39.37	+1	464053..465477	+	474	187931240	lpdA	FTM_0415	-	pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase
328	 29.48	0	466696..467343	+	215	187931241	-	FTM_0416	-	MutT/nudix family protein
329	 32.49	0	467361..467714	+	117	187931242	-	FTM_0417	-	arsenate reductase
330	 37.20	+1	467738..468073	-	111	187931243	-	FTM_0418	-	lipoprotein, putative
331	 33.87	0	468573..469886	-	437	187931244	-	FTM_0419	-	permease
332	 33.77	0	469953..471539	-	528	187931245	-	FTM_0420	-	aminotransferase
333	 31.66	0	474447..475700	-	417	187931246	-	FTM_0423	-	OmpA family protein
334	 34.19	0	475892..476356	+	154	187931247	fkpB	FTM_0424	-	fkbp-type 16 kda peptidyl-prolyl cis-transisomerase
335	 37.10	+1	476337..477293	+	318	187931248	lytB	FTM_0425	-	1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate reductase
336	 35.26	0	477295..477657	+	120	187931249	aroH	FTM_0426	-	chorismate mutase
337	 31.87	0	477666..478487	+	273	187931250	pssA	FTM_0427	-	phosphatidylserine synthase
338	 41.78	+2	478492..478716	-	74	187931251	-	FTM_0428	-	lipoprotein, putative
339	 34.89	0	478869..479576	+	235	187931252	tolQ	FTM_0429	-	group A colicin translocation; tolQ protein
340	 34.69	0	479592..480032	+	146	187931253	tolR	FTM_0430	-	group A colicin translocation; tolR protein
341	 33.56	0	480019..480906	+	295	187931254	tolA	FTM_0431	-	group A colicin translocation; tolA protein
342	 32.26	0	480918..482225	+	435	187931255	tolB	FTM_0432	-	group A colicin translocation; tolB protein
343	 35.37	0	482235..482480	+	81	187931256	-	FTM_0433	-	lipoprotein, putative
344	 34.46	0	482499..483122	+	207	187931257	pal	FTM_0434	-	peptidoglycan-associated lipoprotein
345	 35.55	0	484653..485375	+	240	187931258	-	FTM_0436	-	short-chain dehydrogenase/reductase SDR
346	 34.38	0	485438..485629	+	63	187931259	-	FTM_0437	-	hypothetical protein
347	 34.27	0	485610..487109	+	499	187931260	-	FTM_0438	-	deoxyribodipyrimidine photolyase
348	 30.54	0	488896..489825	+	309	187931261	-	FTM_0440	-	bile acid symporter family protein
349	 32.28	0	490519..491277	+	252	187931262	-	FTM_0442	-	domain of unknown function, putative
350	 34.85	0	491814..492800	+	328	187931263	-	FTM_0444	-	hypothetical protein
351	 30.03	0	493061..494209	+	382	187931264	-	FTM_0445	-	arsenite permease family protein
352	 31.21	0	494188..494610	-	140	187931265	-	FTM_0446	-	hypothetical protein
353	 28.33	-1	494630..494989	-	119	187931266	-	FTM_0447	-	hypothetical protein
354	 28.54	-1	495003..495857	-	284	187931267	ubiA	FTM_0448	-	4-hydroxybenzoate polyprenyl transferase
355	 28.80	-1	495860..496366	-	168	187931268	ubiC	FTM_0449	-	chorismate pyruvate lyase
356	 39.12	+1	496465..497172	+	235	187931269	-	FTM_0450	-	ribonuclease PH
357	 28.40	-1	497226..497549	-	107	187931270	-	FTM_0451	-	hypothetical protein
358	 32.77	0	498666..499739	-	357	187931271	htpX	FTM_0453	-	Zn-dependent protease with chaperone function
359	 32.81	0	499743..500318	-	191	187931272	-	FTM_0454	-	LemA-like protein
360	 34.38	0	501402..502457	+	351	187931273	-	FTM_0456	-	hypothetical protein
361	 32.79	0	503853..504218	-	121	187931274	-	FTM_0458	-	transcriptional regulator, ArsR family
362	 36.24	0	505334..506332	+	332	187931275	gpsA	FTM_0460	-	glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
363	 31.66	0	506333..506869	-	178	187931276	-	FTM_0461	-	hypothetical protein
364	 36.47	+1	506874..508244	-	456	187931277	radA	FTM_0462	-	DNA repair protein RadA
365	 31.78	0	508252..509022	-	256	187931278	-	FTM_0463	-	hypothetical protein
366	 30.67	0	509019..509618	-	199	187931279	-	FTM_0464	-	hypothetical membrane protein
367	 38.53	+1	509621..510679	-	352	187931280	aroC	FTM_0465	-	chorismate synthase
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.