IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
233	 37.10	+1	324339..325241	-	300	187931146	accD	FTM_0294	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
234	 35.93	0	325283..325705	-	140	187931147	ndk	FTM_0295	-	nucleoside diphosphate kinase
235	 37.17	+1	325778..327418	-	546	187931148	pyrG	FTM_0296	-	CTP synthase (UTP-ammonia lyase)
236	 28.42	-1	329475..330431	-	318	187931149	-	FTM_0298	-	hypothetical membrane protein
237	 25.98	-2	332556..333521	+	321	187931150	-	FTM_0299	-	glycosyltransferase sugar-binding region containing DXD motif family
238	 32.91	0	334630..336516	+	628	187931151	htpG	FTM_0300	-	chaperone Hsp90, heat shock protein HtpG
239	 38.42	+1	337979..339493	-	504	187931152	fumA	FTM_0301	-	fumarate hydratase, class I
240	 27.78	-1	340045..340242	-	65	187931153	-	FTM_0302	-	hypothetical protein
241	 34.07	0	340246..342285	-	679	187931154	recG	FTM_0303	-	ATP-dependent DNA helicase RecG
242	 35.36	0	342415..342759	+	114	187931155	-	FTM_0304	-	conserved
243	 32.49	0	342894..343130	+	78	187931156	rpmB	FTM_0305	-	50S ribosomal protein L28
244	 28.21	-1	343157..343312	+	51	187931157	rpmG	FTM_0306	-	50S ribosomal protein L33
245	 33.77	0	343347..344033	+	228	187931158	minC	FTM_0307	-	septum formation inhibitor
246	 35.64	0	344073..344897	+	274	187931159	minD	FTM_0308	-	septum formation inhibitor-activating ATPase
247	 30.77	0	344900..345172	+	90	187931160	minE	FTM_0309	-	cell division topological specificity factor protein
248	 32.84	0	345186..345989	+	267	187931161	-	FTM_0310	-	ABC transporter, ATP-binding protein
249	 33.99	0	345993..346757	+	254	187931162	-	FTM_0311	-	ABC-type transport system permease protein
250	 33.15	0	346757..347290	+	177	187931163	-	FTM_0312	-	ABC transporter, periplasmic protein
251	 32.43	0	347364..348026	+	220	187931164	-	FTM_0313	-	hypothetical protein
252	 24.49	-2	348026..348319	+	97	187931165	-	FTM_0314	-	hypothetical protein
253	 29.96	0	348336..348572	+	78	187931166	-	FTM_0315	-	BolA family protein
254	 26.35	-1	353138..353638	+	166	187931167	-	FTM_0319	-	hypothetical protein
255	 29.26	-1	353839..356565	+	908	187931168	-	FTM_0320	-	type III restriction enzyme
256	 33.63	0	356562..357224	+	220	187931169	ung	FTM_0321	-	uracil-DNA glycosylase
257	 35.56	0	359184..361790	+	868	187931170	gyrA	FTM_0323	-	DNA gyrase, A subunit
258	 33.33	0	361796..362953	+	385	187931171	dxr	FTM_0324	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
259	 34.30	0	362959..365337	+	792	187931172	-	FTM_0325	-	conserved outer membrane protein of unknown function
260	 31.35	0	365473..365976	+	167	187931173	ompH	FTM_0326	-	outer membrane protein OmpH
261	 36.69	+1	365995..367008	+	337	187931174	lpxD1	FTM_0327	-	UDP-3-O-(3-hydroxy-fatty acid)-glucosamine N-acyltransferase
262	 37.80	+1	367023..367514	+	163	187931175	fabZ	FTM_0328	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
263	 35.38	0	367517..368296	+	259	187931176	lpxA	FTM_0329	-	UDP-N-acetylglucosamine acyltransferase
264	 31.76	0	368296..369438	+	380	187931177	lpxB	FTM_0330	-	lipid A disaccharide synthase
265	 29.76	0	369497..370084	+	195	187931178	-	FTM_0331	-	hypothetical membrane protein
266	 34.13	0	370175..370549	+	124	187931179	-	FTM_0332	-	hypothetical protein
267	 33.70	0	372346..373155	-	269	187931180	-	FTM_0335	-	polyphosphate kinase 2
268	 29.54	0	373225..373989	-	254	187931181	pcs	FTM_0336	-	(CDP-alcohol) phosphatidyltransferase
269	 30.16	0	374037..374918	-	293	187931182	ispA	FTM_0337	-	geranyl diphosphate synthase/farnesyl diphosphate synthase
270	 30.94	0	374915..376210	-	431	187931183	kdtA	FTM_0338	-	3-deoxy-D-manno-octulosonic-acid transferase
271	 33.51	0	376315..376893	-	192	187931184	-	FTM_0339	-	RgdB/HAM1 family protein
272	 31.95	0	377000..377797	+	265	187931185	proC	FTM_0340	-	pyrroline-5-carboxylate reductase
273	 31.88	0	379560..380246	+	228	187931186	-	FTM_0342	-	two-component response regulator
274	 32.99	0	380251..381114	+	287	187931187	lepB	FTM_0343	-	signal peptidase I
275	 33.19	0	381121..381813	+	230	187931188	rnc	FTM_0344	-	ribonuclease III
276	 31.90	0	381800..382708	+	302	187931189	truB	FTM_0345	-	tRNA pseudouridine synthase B
277	 33.90	0	382701..384998	+	765	187931190	rnr	FTM_0346	-	ribonuclease R
278	 32.80	0	385455..386198	-	247	187931191	-	FTM_0348	-	oxidoreductase
279	 29.96	0	386781..387254	-	157	187931192	-	FTM_0350	-	hypothetical protein
280	 34.20	0	392469..393158	-	229	187931193	-	FTM_0355	-	two component response regulator
281	 33.33	0	393301..393840	+	179	187931194	-	FTM_0356	-	hypothetical membrane protein
282	 29.85	0	393958..394359	+	133	187931195	-	FTM_0357	-	hypothetical membrane protein
283	 34.81	0	394534..395142	+	202	187931196	-	FTM_0358	-	lipoprotein, putative
284	 36.06	0	395199..396629	+	476	187931197	-	FTM_0359	-	hypothetical protein
285	 33.84	0	396640..397623	+	327	187931198	-	FTM_0360	-	hypothetical protein
286	 32.97	0	397629..399023	+	464	187931199	-	FTM_0361	-	lipoprotein, putative
287	 31.37	0	399163..400077	+	304	187931200	-	FTM_0362	-	hypothetical protein
288	 33.26	0	401409..402824	+	471	187931201	-	FTM_0364	-	nicotinamide phosphoribosyltransferase
289	 32.92	0	404402..404890	-	162	187931202	-	FTM_0366	-	thioesterase family protein
290	 38.72	+1	404952..406139	-	395	187931203	fadA	FTM_0367	-	acetyl-CoA acetyltransferase
291	 36.34	+1	406152..408848	-	898	187931204	-	FTM_0368	-	bifunctional protein: 3-hydroxacyl-CoA dehydrogenase/acyl-CoA-binding protein
292	 37.53	+1	408921..411161	-	746	187931205	fadE	FTM_0369	-	acyl-coenzyme A dehydrogenase
293	 34.28	0	411199..412887	-	562	187931206	fadD	FTM_0370	-	long chain fatty acid-CoA ligase
294	 30.00	0	413031..413450	+	139	187931207	-	FTM_0371	-	arsenate reductase
295	 35.45	0	413499..415715	+	738	187931208	icd	FTM_0372	-	isocitrate dehydrogenase, NADP-dependent
296	 28.60	-1	415729..416616	+	295	187931209	-	FTM_0373	-	hypothetical membrane protein
297	 32.98	0	416640..420908	+	1422	187931210	hrpA	FTM_0374	-	ATP-dependent helicase HrpA
298	 32.75	0	422409..423092	+	227	187931211	-	FTM_0375	-	hypothetical protein
299	 31.41	0	426155..426727	-	190	187931212	-	FTM_0379	-	methylated DNA protein cysteine methyltransferase
300	 32.36	0	426757..427476	+	239	187931213	-	FTM_0380	-	snare associated golgi protein
301	 33.83	0	427479..428897	+	472	187931214	-	FTM_0381	-	dihydrolipoamide dehydrogenase
302	 29.12	-1	428894..429439	+	181	187931215	-	FTM_0382	-	phosphatidyltransferase
303	 38.19	+1	430639..431565	+	308	187931216	-	FTM_0385	-	subunit of DnaJ/DnaK/GrpE: chaperone with DnaK; heat shock protein
304	 31.98	0	431555..432439	-	294	187931217	-	FTM_0386	-	10 TMS drug/metabolite exporter protein
305	 28.57	-1	433532..433888	+	118	187931218	-	FTM_0388	-	hypothetical protein
306	 34.13	0	434192..436201	+	669	187931219	relA	FTM_0389	-	GDP pyrophosphokinase/GTP pyrophosphokinase
307	 34.44	0	436317..436949	-	210	187931220	-	FTM_0390	-	hypothetical protein
308	 28.46	-1	437695..438309	+	204	187931221	-	FTM_0392	-	hypothetical membrane protein
309	 29.89	0	438316..439041	-	241	187931222	-	FTM_0393	-	hypothetical protein
310	 32.65	0	439041..439919	-	292	187931223	xerC	FTM_0394	-	site-specific recombinase
311	 31.80	0	439929..441101	-	390	187931224	-	FTM_0395	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
312	 30.18	0	442579..443022	-	147	187931225	secB2	FTM_0397	-	preprotein translocase, subunit B
313	 33.33	0	443099..445633	-	844	187931226	mutS	FTM_0398	-	DNA mismatch repair protein MutS
314	 35.65	0	445800..446747	+	315	187931227	accA	FTM_0399	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
315	 33.13	0	446767..447270	+	167	187931228	-	FTM_0400	-	pilus assembly protein
316	 31.36	0	447251..448264	+	337	187931229	-	FTM_0401	-	pilus assembly protein
317	 31.86	0	448273..450237	+	654	187931230	-	FTM_0402	-	hypothetical membrane protein
318	 33.11	0	450234..451118	+	294	187931231	-	FTM_0403	-	glucokinase regulatory protein
319	 33.59	0	451120..451512	+	130	187931232	-	FTM_0404	-	hypothetical protein
320	 32.64	0	454242..455540	-	432	187931233	-	FTM_0406	-	monovalent cation:proton antiporter-1
321	 33.20	0	455550..456275	-	241	187931234	-	FTM_0407	-	hypothetical protein
322	 34.63	0	456277..457281	-	334	187931235	trpS	FTM_0408	-	tryptophanyl-tRNA synthetase
323	 31.06	0	457578..458192	-	204	187931236	coaE	FTM_0411	-	dephospho-CoA kinase
324	 32.45	0	458321..459457	+	378	187931237	-	FTM_0412	-	hypothetical protein
325	 38.26	+1	459757..462438	+	893	187931238	aceE	FTM_0413	-	pyruvate dehydrogenase E1 component, homodimeric type
326	 37.69	+1	462456..464039	+	527	187931239	aceF	FTM_0414	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
327	 39.37	+1	464053..465477	+	474	187931240	lpdA	FTM_0415	-	pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase
328	 29.48	0	466696..467343	+	215	187931241	-	FTM_0416	-	MutT/nudix family protein
329	 32.49	0	467361..467714	+	117	187931242	-	FTM_0417	-	arsenate reductase
330	 37.20	+1	467738..468073	-	111	187931243	-	FTM_0418	-	lipoprotein, putative
331	 33.87	0	468573..469886	-	437	187931244	-	FTM_0419	-	permease
332	 33.77	0	469953..471539	-	528	187931245	-	FTM_0420	-	aminotransferase
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.