IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
175	 35.83	0	238774..239934	-	386	187931088	metK	FTM_0214	-	S-adenosylmethionine synthetase
176	 38.55	+1	240228..240476	+	82	187931089	rpsP	FTM_0215	-	30S ribosomal protein S16
177	 32.16	0	240519..241028	+	169	187931090	rimM	FTM_0216	-	16S rRNA processing protein RimM
178	 35.84	0	241431..242189	+	252	187931091	trmD	FTM_0217	-	tRNA (guanine-N1)-methyltransferase
179	 33.62	0	242189..242536	+	115	187931092	rplS	FTM_0218	-	50S ribosomal protein L19
180	 35.04	0	242702..243580	+	292	187931093	xerD	FTM_0219	-	tyrosine recombinase XerD
181	 32.48	0	244554..245138	+	194	187931094	-	FTM_0221	-	acid phosphatase, HAD superfamily protein
182	 35.90	0	247820..248287	+	155	187931095	-	FTM_0224	-	(Di)nucleoside polyphosphate hydrolase
183	 28.87	-1	248297..248923	-	208	187931096	nudH	FTM_0225	-	dGTP pyrophosphohydrolase
184	 32.76	0	248997..249521	+	174	187931097	ampD	FTM_0226	-	N-acetylmuramoyl-L-alanine amidase, protein AmpD
185	 34.50	0	249569..251452	-	627	187931098	parE	FTM_0227	-	DNA topoisomerase IV, B subunit
186	 34.43	0	251543..252724	-	393	187931099	-	FTM_0228	-	drug:H+ antiporter-1 (DHA1) family protein
187	 35.08	0	252724..254094	-	456	187931100	-	FTM_0229	-	outer membrane assembly lipoprotein YfgL
188	 31.30	0	254097..254735	-	212	187931101	-	FTM_0230	-	hypothetical protein
189	 32.77	0	254915..256159	+	414	187931102	hemA	FTM_0231	-	glutamyl-tRNA reductase
190	 39.04	+1	256160..257245	+	361	187931103	prfA	FTM_0232	-	peptide chain release factor 1
191	 31.11	0	257238..258092	+	284	187931104	hemK	FTM_0233	-	modification methylase, HemK family
192	 38.78	+1	259511..261145	-	544	187931105	groEL	FTM_0235	-	chaperonin GroEL (HSP60 family)
193	 37.15	+1	261183..261470	-	95	187931106	groES	FTM_0236	-	co-chaperonin GroES (HSP10)
194	 28.28	-1	261720..262154	+	144	187931107	-	FTM_0237	-	hypothetical protein
195	 29.93	0	262795..263559	+	254	187931108	-	FTM_0239	-	hypothetical protein
196	 33.33	0	266052..266753	+	233	187931109	proQ	FTM_0243	-	activator of osmoprotectant transporter ProP
197	 31.32	0	266776..267321	+	181	187931110	-	FTM_0244	-	hypothetical protein
198	 33.88	0	267336..268790	-	484	187931111	trkH	FTM_0245	-	K+ transporter (Trk) family protein
199	 30.88	0	268902..269105	+	67	187931112	-	FTM_0246	-	hypothetical protein
200	 27.83	-1	269487..270104	-	205	187931113	lolA	FTM_0247	-	lipoprotein releasing system, subunit A, outer membrane lipoproteins carrier
201	 36.70	+1	270105..272600	-	831	187931114	ftsK	FTM_0248	-	cell division protein FtsK
202	 33.33	0	272722..273390	+	222	187931115	-	FTM_0249	-	phosphatidic acid phosphatase, PAP2 superfamily
203	 35.26	0	273637..275091	+	484	187931116	lysP	FTM_0250	-	lysine:H+ symporter
204	 33.96	0	275100..275738	+	212	187931117	-	FTM_0251	-	hypothetical protein
205	 39.92	+2	275758..276744	+	328	187931118	glpX	FTM_0252	-	fructose-1,6-bisphosphatase, class II
206	 31.55	0	278587..280266	+	559	187931119	-	FTM_0254	-	glycosyl transferase, group 2
207	 32.11	0	280277..281584	+	435	187931120	-	FTM_0255	-	transporter-associated protein, HlyC/CorC family
208	 32.76	0	281655..282002	+	115	187931121	-	FTM_0256	-	hypothetical protein
209	 30.11	0	284318..284938	+	206	187931122	-	FTM_0259	-	pilus assembly protein
210	 26.22	-1	288762..289253	-	163	187931123	-	FTM_0263	-	acetyltransferase
211	 31.55	0	289279..290457	-	392	187931124	-	FTM_0264	-	drug:H+ antiporter-1
212	 33.44	0	290513..291457	-	314	187931125	-	FTM_0265	-	modification methylase, HemK family
213	 34.78	0	291461..292840	-	459	187931126	cysS	FTM_0266	-	cysteinyl-tRNA synthetase
214	 26.95	-1	294289..294570	-	93	187931127	-	FTM_0269	-	hypothetical membrane protein
215	 33.33	0	294583..296085	-	500	187931128	-	FTM_0270	-	amino acid-polyamine-organocation family protein
216	 25.54	-2	296450..297193	-	247	187931129	-	FTM_0271	-	hypothetical protein
217	 32.33	0	297195..297890	-	231	187931130	ubiG	FTM_0272	-	3-demethylubiquinone 3-methyltransferase/ 2-octaprenyl-6-hydroxyphenol methylase
218	 37.15	+1	298032..299132	+	366	187931131	-	FTM_0273	-	VacJ family protein
219	 30.58	0	304236..304961	+	241	187931132	-	FTM_0277	-	hypothetical protein
220	 31.21	0	311395..311865	+	156	187931133	-	FTM_0281	-	hypothetical protein
221	 32.48	0	312002..312826	+	274	187931134	-	FTM_0282	-	short-chain dehydrogenase/reductase
222	 32.37	0	312848..314197	-	449	187931135	-	FTM_0283	-	amino acid-polyamine-organocation (APC) superfamily protein
223	 31.16	0	314456..315328	-	290	187931136	-	FTM_0284	-	hypothetical protein
224	 32.89	0	316274..316723	-	149	187931137	-	FTM_0285	-	hypothetical protein
225	 34.09	0	316732..317127	-	131	187931138	-	FTM_0286	-	hypothetical protein
226	 33.47	0	317210..317941	+	243	187931139	-	FTM_0287	-	oxidoreductase
227	 36.11	0	318063..318278	+	71	187931140	rpmE	FTM_0288	-	50S ribosomal protein L31
228	 33.07	0	318489..319994	-	501	187931141	gshA	FTM_0289	-	glutamate-cysteine ligase
229	 30.35	0	320047..321588	-	513	187931142	mviN	FTM_0290	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
230	 34.84	0	321611..322672	-	353	187931143	-	FTM_0291	-	hypothetical protein
231	 33.09	0	322755..323165	-	136	187931144	-	FTM_0292	-	hypothetical protein
232	 32.06	0	323143..324324	-	393	187931145	folC	FTM_0293	-	folylpoly-gamma-glutamate synthetase/ dihydrofolate synthetase
233	 37.10	+1	324339..325241	-	300	187931146	accD	FTM_0294	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
234	 35.93	0	325283..325705	-	140	187931147	ndk	FTM_0295	-	nucleoside diphosphate kinase
235	 37.17	+1	325778..327418	-	546	187931148	pyrG	FTM_0296	-	CTP synthase (UTP-ammonia lyase)
236	 28.42	-1	329475..330431	-	318	187931149	-	FTM_0298	-	hypothetical membrane protein
237	 25.98	-2	332556..333521	+	321	187931150	-	FTM_0299	-	glycosyltransferase sugar-binding region containing DXD motif family
238	 32.91	0	334630..336516	+	628	187931151	htpG	FTM_0300	-	chaperone Hsp90, heat shock protein HtpG
239	 38.42	+1	337979..339493	-	504	187931152	fumA	FTM_0301	-	fumarate hydratase, class I
240	 27.78	-1	340045..340242	-	65	187931153	-	FTM_0302	-	hypothetical protein
241	 34.07	0	340246..342285	-	679	187931154	recG	FTM_0303	-	ATP-dependent DNA helicase RecG
242	 35.36	0	342415..342759	+	114	187931155	-	FTM_0304	-	conserved
243	 32.49	0	342894..343130	+	78	187931156	rpmB	FTM_0305	-	50S ribosomal protein L28
244	 28.21	-1	343157..343312	+	51	187931157	rpmG	FTM_0306	-	50S ribosomal protein L33
245	 33.77	0	343347..344033	+	228	187931158	minC	FTM_0307	-	septum formation inhibitor
246	 35.64	0	344073..344897	+	274	187931159	minD	FTM_0308	-	septum formation inhibitor-activating ATPase
247	 30.77	0	344900..345172	+	90	187931160	minE	FTM_0309	-	cell division topological specificity factor protein
248	 32.84	0	345186..345989	+	267	187931161	-	FTM_0310	-	ABC transporter, ATP-binding protein
249	 33.99	0	345993..346757	+	254	187931162	-	FTM_0311	-	ABC-type transport system permease protein
250	 33.15	0	346757..347290	+	177	187931163	-	FTM_0312	-	ABC transporter, periplasmic protein
251	 32.43	0	347364..348026	+	220	187931164	-	FTM_0313	-	hypothetical protein
252	 24.49	-2	348026..348319	+	97	187931165	-	FTM_0314	-	hypothetical protein
253	 29.96	0	348336..348572	+	78	187931166	-	FTM_0315	-	BolA family protein
254	 26.35	-1	353138..353638	+	166	187931167	-	FTM_0319	-	hypothetical protein
255	 29.26	-1	353839..356565	+	908	187931168	-	FTM_0320	-	type III restriction enzyme
256	 33.63	0	356562..357224	+	220	187931169	ung	FTM_0321	-	uracil-DNA glycosylase
257	 35.56	0	359184..361790	+	868	187931170	gyrA	FTM_0323	-	DNA gyrase, A subunit
258	 33.33	0	361796..362953	+	385	187931171	dxr	FTM_0324	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
259	 34.30	0	362959..365337	+	792	187931172	-	FTM_0325	-	conserved outer membrane protein of unknown function
260	 31.35	0	365473..365976	+	167	187931173	ompH	FTM_0326	-	outer membrane protein OmpH
261	 36.69	+1	365995..367008	+	337	187931174	lpxD1	FTM_0327	-	UDP-3-O-(3-hydroxy-fatty acid)-glucosamine N-acyltransferase
262	 37.80	+1	367023..367514	+	163	187931175	fabZ	FTM_0328	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
263	 35.38	0	367517..368296	+	259	187931176	lpxA	FTM_0329	-	UDP-N-acetylglucosamine acyltransferase
264	 31.76	0	368296..369438	+	380	187931177	lpxB	FTM_0330	-	lipid A disaccharide synthase
265	 29.76	0	369497..370084	+	195	187931178	-	FTM_0331	-	hypothetical membrane protein
266	 34.13	0	370175..370549	+	124	187931179	-	FTM_0332	-	hypothetical protein
267	 33.70	0	372346..373155	-	269	187931180	-	FTM_0335	-	polyphosphate kinase 2
268	 29.54	0	373225..373989	-	254	187931181	pcs	FTM_0336	-	(CDP-alcohol) phosphatidyltransferase
269	 30.16	0	374037..374918	-	293	187931182	ispA	FTM_0337	-	geranyl diphosphate synthase/farnesyl diphosphate synthase
270	 30.94	0	374915..376210	-	431	187931183	kdtA	FTM_0338	-	3-deoxy-D-manno-octulosonic-acid transferase
271	 33.51	0	376315..376893	-	192	187931184	-	FTM_0339	-	RgdB/HAM1 family protein
272	 31.95	0	377000..377797	+	265	187931185	proC	FTM_0340	-	pyrroline-5-carboxylate reductase
273	 31.88	0	379560..380246	+	228	187931186	-	FTM_0342	-	two-component response regulator
274	 32.99	0	380251..381114	+	287	187931187	lepB	FTM_0343	-	signal peptidase I
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.